pycom13g23250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000128
Physical Location & Seq
Forward (+)
20886466 .. 20887352
887 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23250.2

Sequence Viewer

Length: 660 bp
ATGACACGAAGATCGTCCATTGCCATCATGATGCGCGATTTCTTCCCCAAAGACTTCTTCAATCACTCGATCAAGACTCCTTGCTATGAAGATTCTCCTCGTTCGCACAAGCCTAAAAGGCGACAACCAAACGTTCCTTGCCTGCACGAGCTAAAACTGCAAACGGCACAAAACGCTCCTTACCAACACGAGCTGAAACTGCAAACGGCACCAAAAGCTCCTGGCCCGCAAGAGCATAAACTGTCCCTCCTTAACCGACGGTATGTAGGCAACTTGATACTTCAAAACTTCGAGTACATTCACGATTCGGTCACAAAGCCGTATTACAAGGGTGAGCATCACACCAACGTCATCACCGAGGAAAGTTGTGACCAAAAGACACTACACAGCATAAACTCGCTGCAGTCTTTTGCACAACCCTACACGATAAAAGTGACGCACTGGAACAAGCTTCAAGCAGCAGCGGCAAAGAGCCCACGACAAGCAGTAAGGTTAATGTGTACAGCAACGTCACTGTCGAGGGAAAATAGTGACCAAAAGGTAAAAAATGATGCACTGCAACAAGCACTAGGCAAAGAGCACAGTTTAACCCACATTCTGCTCACTCCATCACCGATGGCAAATTCACAAGAAGCTACCACCAATTGTGAACATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

25.11

Weight (kDa)

9.45

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AccII CGCG 1 cut(s) 36
AciI CCGC 2 cut(s) 227, 464
AclI AACGTT 1 cut(s) 132
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 2 cut(s) 296, 502
AgsI TTSAA 3 cut(s) 61, 284, 455
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 5 cut(s) 151, 193, 218, 451, 635
AluI AGCT 5 cut(s) 151, 193, 218, 451, 635
Alw21I GWGCWC 1 cut(s) 582
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 400, 458, 461
ApoI RAATTY 1 cut(s) 622
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 344, 346, 603
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 476
BauI CACGAG 2 cut(s) 146, 188
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 387, 470, 473
BccI CCATC 3 cut(s) 32, 610, 616
BceAI ACGGC 3 cut(s) 180, 222, 304
BciT130I CCWGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 4 cut(s) 401, 459, 462, 465
BlsI GCNGC 4 cut(s) 402, 460, 463, 466
Bme1390I CCNGG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 21, 346, 541
BsaJI CCNNGG 1 cut(s) 357
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 387, 470, 473
BsgI GTGCAG 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 582
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 476, 582
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 2 cut(s) 11, 69
BspACI CCGC 2 cut(s) 227, 464
BspANI GGCC 1 cut(s) 225
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 2 cut(s) 11, 69
BssSI CACGAG 2 cut(s) 146, 188
Bst2BI CACGAG 2 cut(s) 146, 188
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 4 cut(s) 243, 261, 516, 584
BstAUI TGTACA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 143, 227
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 14, 72
BstMBI GATC 2 cut(s) 11, 69
BstMWI GCNNNNNNNGC 6 cut(s) 118, 157, 173, 199, 215, 464
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 387, 470, 473
BsuRI GGCC 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 3 cut(s) 439, 512, 554
Cac8I GCNNGC 2 cut(s) 143, 227
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 295, 501
CviAII CATG 1 cut(s) 28
CviJI RGCY 9 cut(s) 112, 151, 193, 218, 225, 319, 451, 474, 635
CviKI_1 RGCY 9 cut(s) 112, 151, 193, 218, 225, 319, 451, 474, 635
CviQI GTAC 2 cut(s) 295, 501
DpnI GATC 2 cut(s) 13, 71
DpnII GATC 2 cut(s) 11, 69
Eco24I GRGCYC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 476
FaeI CATG 1 cut(s) 31
FaiI YATR 6 cut(s) 29, 87, 237, 264, 392, 654
FaqI GGGAC 1 cut(s) 229
FatI CATG 1 cut(s) 27
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 4 cut(s) 401, 459, 462, 465
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 401, 459, 462, 465
FspBI CTAG 1 cut(s) 569
GlaI GCGC 1 cut(s) 35
GluI GCNGC 4 cut(s) 401, 459, 462, 465
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 36
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 76, 92, 305
HphI GGTGA 3 cut(s) 344, 346, 603
Hpy166II GTNNAC 2 cut(s) 501, 650
Hpy188III TCNNGA 3 cut(s) 28, 73, 302
Hpy8I GTNNAC 2 cut(s) 501, 650
Hpy99I CGWCG 1 cut(s) 261
HpyCH4III ACNGT 4 cut(s) 243, 261, 516, 584
HpyCH4IV ACGT 3 cut(s) 132, 348, 509
HpyCH4V TGCA 7 cut(s) 145, 160, 202, 403, 413, 554, 559
HpyF10VI GCNNNNNNNGC 6 cut(s) 118, 157, 173, 199, 215, 464
HpySE526I ACGT 3 cut(s) 132, 348, 509
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 11, 69
LmnI GCTCC 2 cut(s) 181, 223
LpnPI CCDG 4 cut(s) 155, 207, 234, 427
Lsp1109I GCAGC 3 cut(s) 387, 470, 473
LweI GCATC 3 cut(s) 21, 346, 541
MaeI CTAG 1 cut(s) 569
MaeII ACGT 3 cut(s) 132, 348, 509
MaeIII GTNAC 5 cut(s) 310, 368, 433, 510, 530
MalI GATC 2 cut(s) 13, 71
MboI GATC 2 cut(s) 11, 69
MboII GAAGA 4 cut(s) 21, 34, 49, 101
MfeI CAATTG 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 476, 582
MluCI AATT 2 cut(s) 622, 643
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 4 cut(s) 108, 257, 352, 513
MseI TTAA 3 cut(s) 252, 494, 587
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 643
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 6 cut(s) 118, 157, 173, 199, 215, 464
NdeII GATC 2 cut(s) 11, 69
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 5 cut(s) 310, 368, 433, 510, 530
PagI TCATGA 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 515
PfeI GAWTC 2 cut(s) 92, 305
PkrI GCNGC 4 cut(s) 402, 460, 463, 466
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 405
RsaI GTAC 2 cut(s) 296, 502
RsaNI GTAC 2 cut(s) 295, 501
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 252, 494, 587
SatI GCNGC 4 cut(s) 401, 459, 462, 465
Sau3AI GATC 2 cut(s) 11, 69
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 2 cut(s) 476, 582
SfaNI GCATC 3 cut(s) 21, 346, 541
SfcI CTRYAG 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 2 cut(s) 622, 643
SsiI CCGC 2 cut(s) 227, 464
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 4 cut(s) 243, 261, 516, 584
TaiI ACGT 3 cut(s) 135, 351, 512
TaqI TCGA 3 cut(s) 68, 291, 518
TaqII GACCGA 1 cut(s) 298
TasI AATT 2 cut(s) 622, 643
TatI WGTACW 2 cut(s) 294, 500
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 92, 305
Tru1I TTAA 3 cut(s) 252, 494, 587
Tru9I TTAA 3 cut(s) 252, 494, 587
TscAI CASTG 3 cut(s) 446, 519, 561
TseFI GTSAC 5 cut(s) 310, 368, 433, 510, 530
TseI GCWGC 3 cut(s) 400, 458, 461
Tsp45I GTSAC 5 cut(s) 310, 368, 433, 510, 530
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 3 cut(s) 446, 519, 561
XapI RAATTY 1 cut(s) 622
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.