Rw1G005980

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000128
Physical Location & Seq
Reverse (-)
12106745 .. 12107896
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005980.1

Sequence Viewer

Length: 1152 bp
ATGAAGAGAATGCTAGCTGAAAAAGATGCTCAAATAGCAGCACTGACTTCTCAATTGGCTGCTATGGCCAACATAAGCGATCATAAGAATAATGAAAAGAGTGATCGTGAAAAGAACATCGGAGGACATGGTTCCACAATTGCAAGTCTTGAAGACATAAAGACACTAATTGCAGAAGGAATCCGTGAAGTATACACCTCCTCAAATCCACAGTTCTCTGGGTACTTGAAACCCTACCCTGCTCATTACGATGCACTACCATTCCCTAAAGGCTATCAGAAGCCAACTTTTGACAAGTTCAATGGAGTAGATGGCTCTCCGCATGAACATTTGGCTCATTTCTTCTCAGCCTGTGGGGAAACATCACAGTTAGATGCATTGTTAATAAGGCAGTTTGTTCAGTCCCTTAAAGGAGCAGCTTTTACTTGGTACAGTCAATTACAACCAAGTTCTATCCTCACATGGGACGATATGCAAAGAGCATTTCTGGCACAGTTTGTCAGCTCCAAAAACAAAGTCTCAATTATCGACTTGGCTGACACTAAACAGAATTCTGATGAAAGCACTAATGAATTCATTTCCAAATGGAGGAGCTTAAAACTCCAATGCTCGGAAAAATTAACGGAGCTATCAGCAGTACAAATGTGCTCAAACAATCTCTTACCACAGATAGCAACTTTTGTCAGCACCGCAGAACCTCAAACATTCGAAGCACTAGTCTCAAAAGCTAGCAATGTCGAAAGACAAGTCTCCCGTAAGAAGATTATGACACAAAGGGCAGCCTTTAAAGACCATAGAGTTGACAACACAGATGAGTCGCTGGCAACCTTTGTCAAGAATGACAACAAGTTAAACACATGCAAAGGAAAAGAAGGGTCTAGAAAGCTCACTCTCAAAGAAAGAAAAGAAGTCAAATACTCTTTCGATGATGATGATGTCGAACATATTTTCAGTGAGCTCATCAACGCACAAGCTATTGAGCTTCCTGAATCGAAACGACGAGGTGAAGTCAACAAGACCAACGACCCCAAATTTTGCCGGTATCATCGAATCGTAGGTCACTTAACAAGGGATTGTTTCGTTCTGAAGAACATAATCCAAGAAATGGTCAACAACAAGGAAATTGAGGTGGAGACATCGTCAGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

383

Amino Acids

43.29

Weight (kDa)

6.81

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 125 - 254 1.7e-06 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 132 - 217 3.7e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 320, 690
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 3 cut(s) 550, 572, 1031
AcuI CTGAAG 1 cut(s) 1106
AfaI GTAC 3 cut(s) 224, 431, 639
AfiI CCNNNNNNNGG 4 cut(s) 463, 588, 610, 1105
AgsI TTSAA 3 cut(s) 152, 229, 301
AhlI ACTAGT 1 cut(s) 715
Alw21I GWGCWC 2 cut(s) 650, 960
Alw26I GTCTC 4 cut(s) 523, 724, 754, 1127
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 38, 59, 416, 779
ApoI RAATTY 3 cut(s) 550, 572, 1031
ArsI GACNNNNNNTTYG 8 cut(s) 501, 533, 702, 732, 734, 764, 1042, 1074
AsuHPI GGTGA 1 cut(s) 1016
AsuII TTCGAA 1 cut(s) 708
AsuNHI GCTAGC 2 cut(s) 13, 728
BalI TGGCCA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 650, 960
BbvI GCAGC 4 cut(s) 46, 50, 428, 791
BccI CCATC 1 cut(s) 305
BcoDI GTCTC 4 cut(s) 523, 724, 754, 1127
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 4 cut(s) 14, 716, 729, 879
BisI GCNGC 4 cut(s) 39, 60, 417, 780
BlsI GCNGC 4 cut(s) 40, 61, 418, 781
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 3 cut(s) 16, 241, 364
BmtI GCTAGC 2 cut(s) 17, 732
BpiI GAAGAC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 708
BsaXI ACNNNNNCTCC 1 cut(s) 1124
Bsc4I CCNNNNNNNGG 4 cut(s) 463, 588, 610, 1105
Bse118I RCCGGY 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 739
BseLI CCNNNNNNNGG 4 cut(s) 463, 588, 610, 1105
BseMI GCAATG 1 cut(s) 739
BseMII CTCAG 1 cut(s) 360
BseRI GAGGAG 2 cut(s) 190, 604
BseXI GCAGC 4 cut(s) 46, 50, 428, 791
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 650, 960
BsiSI CCGG 1 cut(s) 1039
BslFI GGGAC 2 cut(s) 388, 479
BslI CCNNNNNNNGG 4 cut(s) 463, 588, 610, 1105
BsmAI GTCTC 4 cut(s) 523, 724, 754, 1127
BsmFI GGGAC 2 cut(s) 388, 479
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 708
Bsp1286I GDGCHC 2 cut(s) 650, 960
Bsp143I GATC 2 cut(s) 79, 103
BspACI CCGC 2 cut(s) 320, 690
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 133
BspOI GCTAGC 2 cut(s) 17, 732
BspT104I TTCGAA 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 739
BsrFI RCCGGY 1 cut(s) 1038
BssAI RCCGGY 1 cut(s) 1038
BssMI GATC 2 cut(s) 79, 103
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst4CI ACNGT 4 cut(s) 213, 369, 434, 495
BstBI TTCGAA 1 cut(s) 708
BstC8I GCNNGC 3 cut(s) 15, 730, 822
BstDEI CTNAG 1 cut(s) 346
BstKTI GATC 2 cut(s) 82, 106
BstMAI GTCTC 4 cut(s) 523, 724, 754, 1127
BstMBI GATC 2 cut(s) 79, 103
BstMWI GCNNNNNNNGC 3 cut(s) 35, 65, 488
BstNSI RCATGY 1 cut(s) 861
BstV1I GCAGC 4 cut(s) 46, 50, 428, 791
BstV2I GAAGAC 1 cut(s) 159
BstZ17I GTATAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 41, 958
Cac8I GCNNGC 3 cut(s) 15, 730, 822
Cfr10I RCCGGY 1 cut(s) 1038
Csp6I GTAC 3 cut(s) 223, 430, 638
CviAII CATG 4 cut(s) 128, 323, 462, 858
CviQI GTAC 3 cut(s) 223, 430, 638
DdeI CTNAG 1 cut(s) 346
DpnI GATC 2 cut(s) 81, 105
DpnII GATC 2 cut(s) 79, 103
DraI TTTAAA 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 958
Eco24I GRGCYC 1 cut(s) 960
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 1 cut(s) 1106
EcoICRI GAGCTC 1 cut(s) 958
EcoRI GAATTC 2 cut(s) 550, 572
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 960
FaeI CATG 4 cut(s) 131, 326, 465, 861
FaqI GGGAC 2 cut(s) 388, 479
FatI CATG 4 cut(s) 127, 322, 461, 857
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 39, 60, 417, 780
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 4 cut(s) 39, 60, 417, 780
FspBI CTAG 4 cut(s) 14, 716, 729, 879
GluI GCNGC 4 cut(s) 39, 60, 417, 780
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 1039
Hin1II CATG 4 cut(s) 131, 326, 465, 861
HincII GTYRAC 3 cut(s) 802, 1012, 1111
HindII GTYRAC 3 cut(s) 802, 1012, 1111
HinfI GANTC 4 cut(s) 180, 815, 989, 1050
HpaII CCGG 1 cut(s) 1039
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 4 cut(s) 193, 802, 1012, 1111
Hpy188I TCNGA 5 cut(s) 122, 279, 556, 613, 1086
Hpy188III TCNNGA 5 cut(s) 107, 149, 835, 879, 986
Hpy8I GTNNAC 4 cut(s) 193, 802, 1012, 1111
Hpy99I CGWCG 1 cut(s) 1002
HpyAV CCTTC 2 cut(s) 170, 866
HpyCH4III ACNGT 4 cut(s) 213, 369, 434, 495
HpyCH4V TGCA 6 cut(s) 143, 173, 254, 377, 475, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 65, 488
HpyF3I CTNAG 1 cut(s) 346
Hsp92II CATG 4 cut(s) 131, 326, 465, 861
Kzo9I GATC 2 cut(s) 79, 103
LmnI GCTCC 4 cut(s) 413, 509, 591, 625
LpnPI CCDG 7 cut(s) 204, 252, 364, 473, 806, 999, 1052
Lsp1109I GCAGC 4 cut(s) 46, 50, 428, 791
LweI GCATC 3 cut(s) 16, 241, 364
MaeI CTAG 4 cut(s) 14, 716, 729, 879
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 2 cut(s) 81, 105
MboI GATC 2 cut(s) 79, 103
MboII GAAGA 5 cut(s) 16, 164, 334, 772, 1099
MfeI CAATTG 2 cut(s) 53, 138
MhlI GDGCHC 2 cut(s) 650, 960
MlsI TGGCCA 1 cut(s) 68
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 824
MnlI CCTC 8 cut(s) 116, 208, 211, 467, 582, 708, 995, 1120
Mox20I TGGCCA 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 379
MscI TGGCCA 1 cut(s) 68
MseI TTAA 7 cut(s) 383, 408, 596, 620, 786, 851, 1064
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 68
MspI CCGG 1 cut(s) 1039
MunI CAATTG 2 cut(s) 53, 138
Mva1269I GAATGC 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 35, 65, 488
NdeII GATC 2 cut(s) 79, 103
NheI GCTAGC 2 cut(s) 13, 728
NlaIII CATG 4 cut(s) 131, 326, 465, 861
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 861
NspV TTCGAA 1 cut(s) 708
PctI GAATGC 1 cut(s) 15
PfeI GAWTC 3 cut(s) 180, 989, 1050
PflFI GACNNNGTC 1 cut(s) 1138
PflMI CCANNNNNTGG 1 cut(s) 1105
PkrI GCNGC 4 cut(s) 40, 61, 418, 781
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
Psp124BI GAGCTC 1 cut(s) 960
PspN4I GGNNCC 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 1138
RsaI GTAC 3 cut(s) 224, 431, 639
RsaNI GTAC 3 cut(s) 223, 430, 638
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 960
SaqAI TTAA 7 cut(s) 383, 408, 596, 620, 786, 851, 1064
SatI GCNGC 4 cut(s) 39, 60, 417, 780
Sau3AI GATC 2 cut(s) 79, 103
SchI GAGTC 1 cut(s) 824
SduI GDGCHC 2 cut(s) 650, 960
SfaNI GCATC 3 cut(s) 16, 241, 364
SfuI TTCGAA 1 cut(s) 708
SmiMI CAYNNNNRTG 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 715
SsiI CCGC 2 cut(s) 320, 690
SspMI CTAG 4 cut(s) 14, 716, 729, 879
SstI GAGCTC 1 cut(s) 960
TaaI ACNGT 4 cut(s) 213, 369, 434, 495
TaqI TCGA 7 cut(s) 528, 708, 738, 924, 939, 992, 1048
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 3 cut(s) 180, 989, 1050
Tru1I TTAA 7 cut(s) 383, 408, 596, 620, 786, 851, 1064
Tru9I TTAA 7 cut(s) 383, 408, 596, 620, 786, 851, 1064
TscAI CASTG 2 cut(s) 48, 958
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 4 cut(s) 38, 59, 416, 779
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 6 cut(s) 17, 108, 339, 565, 573, 585
TspGWI ACGGA 2 cut(s) 173, 638
TspRI CASTG 2 cut(s) 48, 958
Tth111I GACNNNGTC 1 cut(s) 1138
Van91I CCANNNNNTGG 1 cut(s) 1105
XapI RAATTY 3 cut(s) 550, 572, 1031
XbaI TCTAGA 1 cut(s) 878
XceI RCATGY 1 cut(s) 861
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 4 cut(s) 14, 716, 729, 879
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.