pycom07g27480
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000128
Physical Location & Seq
Forward (+)
27204240 .. 27205237
998 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27480.1

Sequence Viewer

Length: 954 bp
ATGTCAAAGGCTAGGCATGACTTTGCTTCATCTTCAAATCTTGGAAAGAAGGTTTCAAACACCGTCAATGACAAAGATCGTGACCTCACTGAGACTCAAAAGAAGTTGAAGGAGCATGATTACGGAGTTGACAACAACAAAGCTGGACTTGGCTTCACACCAAATACACCCGTGAAGATTTTAAGCAAAGTGAAGAAAGCTAGCGCTCAACACATCAGCGTGAGCATTGAACAAAACCAAAAAGAGCCTAAACCCGCCCCTCGGACGTCGATCTTCGATAGGATGAGCCATTCAAGCTCCAGAATTTCAGTGCTTAATCGCATTGGTAGTCAAGGCCGAACCTCTGTCTTCAAGAGGCTTAACGCGCCAACATCCCAAAGCTCTGTTTTTGAAAGGTTGTTAAAGCCTAAGAAACAAAGCAACACAGCTATCTCTCCTCTGCGACGATCAGCTTCGGAAAGATTTGAAGATAATGAGAAGCCTTTTGGAAAGAGGAAGACAACACCAAAGGAAGAAAAGTTCGATGGGTTAGCAGAAAAAGGCGATGTTCGAAGCTTGATTCCTTCAAGGATGAAGCGCCAAGCAATCCTAGAGGTCGACACAAAAGTACCACTGAAAGTAAGGAAGCGCATCATCGTCCACACTGGCAAATCTTCATGCCAACAAACCCAAGAGGACGGCACTAAAGATGAAATCCTTAAGAAAGATGTCACTTCTGGCTCTTTCGACTCAAAGTCTTCACCTCGACTGTTGGGGGCATGCTCCAAGTCAAGTGAAATTGAAGGATGGACTCATGTCACTCCGAAGAAACTGCACGAGAAACATATGTCTTCTCCACAAGTGCACCAATCAGAAAGGAGGGAAATCAGCTTTCACCAACCTCCAAAGCAATGTGAAAATGTTGAAGATAAGAAAATTTCAACACAAAGATCGTTCATGCGCTCCTTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.73

Weight (kDa)

10.06

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 365
AciI CCGC 1 cut(s) 255
AcsI RAATTY 2 cut(s) 303, 915
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 1 cut(s) 609
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 261
AflII CTTAAG 1 cut(s) 698
AhdI GACNNNNNGTC 1 cut(s) 733
AloI GAACNNNNNNTCC 2 cut(s) 503, 535
AluBI AGCT 8 cut(s) 143, 200, 297, 381, 428, 452, 555, 870
AluI AGCT 8 cut(s) 143, 200, 297, 381, 428, 452, 555, 870
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 1 cut(s) 86
Alw44I GTGCAC 1 cut(s) 842
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 1 cut(s) 334
ApaLI GTGCAC 1 cut(s) 842
ApoI RAATTY 2 cut(s) 303, 915
AspLEI GCGC 5 cut(s) 206, 367, 579, 630, 942
AsuHPI GGTGA 2 cut(s) 732, 866
AsuII TTCGAA 1 cut(s) 550
AsuNHI GCTAGC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 846
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BauI CACGAG 1 cut(s) 815
BbsI GAAGAC 4 cut(s) 340, 503, 729, 822
Bbv12I GWGCWC 1 cut(s) 846
BccI CCATC 2 cut(s) 518, 780
BceAI ACGGC 1 cut(s) 694
BcgI CGANNNNNNTGC 2 cut(s) 793, 827
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 3 cut(s) 12, 201, 590
BfoI RGCGCY 2 cut(s) 207, 580
BfrI CTTAAG 1 cut(s) 698
BmeRI GACNNNNNGTC 1 cut(s) 733
BmsI GCATC 1 cut(s) 639
BmtI GCTAGC 1 cut(s) 204
BoxI GACNNNNGTC 1 cut(s) 794
BpiI GAAGAC 4 cut(s) 340, 503, 729, 822
BpmI CTGGAG 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 896
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 4 cut(s) 288, 371, 576, 791
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 896
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 846
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 846
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 4 cut(s) 76, 270, 446, 929
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 896
BsrI ACTGG 1 cut(s) 649
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 4 cut(s) 76, 270, 446, 929
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 815
Bst2BI CACGAG 1 cut(s) 815
Bst4CI ACNGT 2 cut(s) 64, 750
BstACI GRCGYC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 202, 760
BstDEI CTNAG 2 cut(s) 90, 408
BstF5I GGATG 4 cut(s) 288, 371, 576, 791
BstFNI CGCG 1 cut(s) 365
BstH2I RGCGCY 2 cut(s) 207, 580
BstHHI GCGC 5 cut(s) 206, 367, 579, 630, 942
BstKTI GATC 4 cut(s) 79, 273, 449, 932
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 76, 270, 446, 929
BstMWI GCNNNNNNNGC 3 cut(s) 294, 364, 946
BstNSI RCATGY 1 cut(s) 762
BstPAI GACNNNNGTC 1 cut(s) 794
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 365
BstV2I GAAGAC 4 cut(s) 340, 503, 729, 822
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 4 cut(s) 288, 371, 576, 791
BtsIMutI CAGTG 4 cut(s) 87, 315, 611, 642
Cac8I GCNNGC 2 cut(s) 202, 760
CfoI GCGC 5 cut(s) 206, 367, 579, 630, 942
Csp6I GTAC 1 cut(s) 608
CviAII CATG 6 cut(s) 17, 116, 657, 759, 794, 937
CviQI GTAC 1 cut(s) 608
DdeI CTNAG 2 cut(s) 90, 408
DpnI GATC 4 cut(s) 78, 272, 448, 931
DpnII GATC 4 cut(s) 76, 270, 446, 929
DriI GACNNNNNGTC 1 cut(s) 733
Eam1105I GACNNNNNGTC 1 cut(s) 733
Eco47III AGCGCT 1 cut(s) 205
FaeI CATG 6 cut(s) 20, 119, 660, 762, 797, 940
FaiI YATR 9 cut(s) 18, 117, 658, 760, 795, 825, 827, 938, 952
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 6 cut(s) 16, 115, 656, 758, 793, 936
FauI CCCGC 1 cut(s) 262
FauNDI CATATG 1 cut(s) 825
FblI GTMKAC 1 cut(s) 597
FokI GGATG 4 cut(s) 295, 358, 583, 798
FspBI CTAG 3 cut(s) 12, 201, 590
GlaI GCGC 5 cut(s) 205, 366, 578, 629, 941
GsuI CTGGAG 1 cut(s) 283
HaeII RGCGCY 2 cut(s) 207, 580
HaeIII GGCC 1 cut(s) 336
HhaI GCGC 5 cut(s) 206, 367, 579, 630, 942
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 6 cut(s) 20, 119, 660, 762, 797, 940
Hin6I GCGC 5 cut(s) 204, 365, 577, 628, 940
HinP1I GCGC 5 cut(s) 204, 365, 577, 628, 940
HincII GTYRAC 2 cut(s) 130, 598
HindII GTYRAC 2 cut(s) 130, 598
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 4 cut(s) 94, 559, 728, 790
HphI GGTGA 2 cut(s) 732, 866
Hpy166II GTNNAC 4 cut(s) 130, 598, 640, 844
Hpy188I TCNGA 4 cut(s) 264, 457, 804, 853
Hpy188III TCNNGA 3 cut(s) 80, 300, 352
Hpy8I GTNNAC 4 cut(s) 130, 598, 640, 844
Hpy99I CGWCG 2 cut(s) 271, 447
HpyAV CCTTC 4 cut(s) 43, 103, 573, 776
HpyCH4III ACNGT 2 cut(s) 64, 750
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 814, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 364, 946
HpyF3I CTNAG 2 cut(s) 90, 408
HpySE526I ACGT 1 cut(s) 266
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 6 cut(s) 20, 119, 660, 762, 797, 940
HspAI GCGC 5 cut(s) 204, 365, 577, 628, 940
Kzo9I GATC 4 cut(s) 76, 270, 446, 929
LmnI GCTCC 4 cut(s) 112, 302, 767, 947
LpnPI CCDG 4 cut(s) 129, 313, 630, 702
LweI GCATC 1 cut(s) 639
MaeI CTAG 3 cut(s) 12, 201, 590
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 3 cut(s) 80, 709, 796
MalI GATC 4 cut(s) 78, 272, 448, 931
MboI GATC 4 cut(s) 76, 270, 446, 929
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 3 cut(s) 303, 777, 915
MlyI GAGTC 3 cut(s) 88, 722, 784
MseI TTAA 5 cut(s) 182, 315, 360, 401, 699
MslI CAYNNNNRTG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 698
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 294, 364, 946
NdeI CATATG 1 cut(s) 825
NdeII GATC 4 cut(s) 76, 270, 446, 929
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 6 cut(s) 20, 119, 660, 762, 797, 940
NmuCI GTSAC 3 cut(s) 80, 709, 796
NspI RCATGY 1 cut(s) 762
NspV TTCGAA 1 cut(s) 550
PaeI GCATGC 1 cut(s) 762
PfeI GAWTC 1 cut(s) 559
PleI GAGTC 3 cut(s) 88, 722, 784
PpsI GAGTC 3 cut(s) 88, 722, 784
PshAI GACNNNNGTC 1 cut(s) 794
RsaI GTAC 1 cut(s) 609
RsaNI GTAC 1 cut(s) 608
RseI CAYNNNNRTG 1 cut(s) 218
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 5 cut(s) 182, 315, 360, 401, 699
Sau3AI GATC 4 cut(s) 76, 270, 446, 929
SchI GAGTC 3 cut(s) 88, 722, 784
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 550
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
SphI GCATGC 1 cut(s) 762
Sse9I AATT 3 cut(s) 303, 777, 915
SsiI CCGC 1 cut(s) 255
SspMI CTAG 3 cut(s) 12, 201, 590
TaaI ACNGT 2 cut(s) 64, 750
TaiI ACGT 1 cut(s) 269
TaqI TCGA 7 cut(s) 269, 276, 522, 550, 597, 726, 745
TasI AATT 3 cut(s) 303, 777, 915
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 5 cut(s) 182, 315, 360, 401, 699
Tru9I TTAA 5 cut(s) 182, 315, 360, 401, 699
TscAI CASTG 4 cut(s) 94, 315, 618, 649
TseFI GTSAC 3 cut(s) 80, 709, 796
Tsp45I GTSAC 3 cut(s) 80, 709, 796
TspDTI ATGAA 5 cut(s) 18, 587, 645, 705, 925
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 4 cut(s) 94, 315, 618, 649
Vha464I CTTAAG 1 cut(s) 698
VneI GTGCAC 1 cut(s) 842
XapI RAATTY 2 cut(s) 303, 915
XceI RCATGY 1 cut(s) 762
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 3 cut(s) 12, 201, 590
ZraI GACGTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.