Rroxscaffold_4G00287780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000128
Physical Location & Seq
Forward (+)
8751181 .. 8753907
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287780.1

Sequence Viewer

Length: 576 bp
ATGCAAGCGCCGAGGAAATGCATCGTGTCAAGGACCCGAAATACTGCAAGTACCACCGGCTCGTCACCACCCAAAGGAGAAATGCTTTGTTCGAAAGATTTAATAATGAATCTCGCCAAGCAAGGAAGGATTGAGCTGGATGTCGATGATGTTGTTGAGGTAAAACCGCACCACCATCGTGTTTGGTTCATTCGAGCCTCGCCCGTTGTCTCCTCTTCCAATGAAAGCACCATATCGCCTTTCAAGAAAGCCGTGCATGGAGTCAAAGTTAGAGGAAGTCAAGCCAATCCAGCAAGCAAGCCTCACACCGTTGCAACTACTAAAGTTGACTCGGTTATTGATGATGAGGGATGGATACTTGTCACTCGAAGAAAGGCACGCAAGAGCCCATCGCCAAATTTACCTATCACTCAAGCAACCGCAAGCAAACACGAGAAAGTCGTCAACATCTCGAGAAAGGTAGGACGAGATTTGTCAAAGGGGAGGGGCATTCCTTCCGTTCAAAAACCCCGTAGTGTGGTTCGGTTTCACCAACAAGAGTCTTTCCCAAGAGAGGCGACGAACAAGAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

10.75

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 167, 420
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 74, 517, 553
AgsI TTSAA 2 cut(s) 244, 503
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 451
ApoI RAATTY 1 cut(s) 397
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 57, 521
AsuII TTCGAA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 451
AvaII GGWCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 389
BauI CACGAG 1 cut(s) 431
BccI CCATC 3 cut(s) 183, 345, 397
BceAI ACGGC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciVI GTATCC 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 11
BfuI GTATCC 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 35
BmsI GCATC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 517, 553
Bse118I RCCGGY 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 145, 356
BseLI CCNNNNNNNGG 3 cut(s) 74, 517, 553
BseRI GAGGAG 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 74, 517, 553
BsmAI GTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 389
BspACI CCGC 2 cut(s) 167, 420
BspLI GGNNCC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 11
BssSI CACGAG 1 cut(s) 431
Bst2BI CACGAG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 5 cut(s) 6, 295, 299, 379, 424
BstF5I GGATG 2 cut(s) 145, 356
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 290
BsuI GTATCC 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 145, 356
Cac8I GCNNGC 5 cut(s) 6, 295, 299, 379, 424
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 257
CviJI RGCY 7 cut(s) 60, 136, 197, 251, 284, 301, 387
CviKI_1 RGCY 7 cut(s) 60, 136, 197, 251, 284, 301, 387
CviQI GTAC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 389
FaeI CATG 1 cut(s) 260
FaiI YATR 2 cut(s) 233, 258
FatI CATG 1 cut(s) 256
FokI GGATG 2 cut(s) 152, 363
FriOI GRGCYC 1 cut(s) 389
GlaI GCGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 11
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 2 cut(s) 328, 445
HindII GTYRAC 2 cut(s) 328, 445
HinfI GANTC 4 cut(s) 109, 261, 329, 539
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 57, 521
Hpy166II GTNNAC 2 cut(s) 328, 445
Hpy188III TCNNGA 3 cut(s) 244, 451, 453
Hpy8I GTNNAC 2 cut(s) 328, 445
Hpy99I CGWCG 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 120, 504
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 4, 21, 47, 256, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 70, 122, 303
LweI GCATC 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 63, 361
MboII GAAGA 2 cut(s) 207, 381
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 1 cut(s) 397
MlyI GAGTC 3 cut(s) 270, 323, 548
MnlI CCTC 9 cut(s) 6, 151, 208, 223, 266, 312, 340, 477, 547
Mph1103I ATGCAT 1 cut(s) 23
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 290
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 63, 361
NsiI ATGCAT 1 cut(s) 23
NspV TTCGAA 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 177
PaeR7I CTCGAG 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 109
PleI GAGTC 3 cut(s) 269, 323, 547
PpsI GAGTC 3 cut(s) 269, 323, 547
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 33
PspPPI RGGWCCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 3 cut(s) 270, 323, 548
SduI GDGCHC 1 cut(s) 389
SetI ASST 5 cut(s) 138, 162, 406, 462, 575
SfaNI GCATC 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 411, 451
SmoI CTYRAG 2 cut(s) 411, 451
Sse9I AATT 1 cut(s) 397
SsiI CCGC 2 cut(s) 167, 420
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 5 cut(s) 92, 144, 193, 367, 452
TasI AATT 1 cut(s) 397
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseFI GTSAC 2 cut(s) 63, 361
Tsp45I GTSAC 2 cut(s) 63, 361
TspDTI ATGAA 3 cut(s) 122, 178, 237
TspGWI ACGGA 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.