pycom10g08520

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000128
Physical Location & Seq
Forward (+)
11245813 .. 11247051
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g08520.1

Sequence Viewer

Length: 1239 bp
ATGCTTGTGGATGGTGGGTCGGCCATAAACATCATGCCAAAATCAACAATGACCATAATCGGCATCAAGGTGAATGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATAGGCATGATCCGAGTAGAGATGACCATGGGTGAGCTCAAATCAAGCACGATATTCCACGTAATTGATGCAAGAACTTCCTATAGCTTGCTCTTAGGAAGACCTTGGATCCACGCAAATGGGGTAGTGCCGTCCACCCTTCACCAATGCCTAAAATTTTACCGAGAAGGAGTGAAGGTGATCCAAGGTGATACCAAGCCATTCACCGAAGCCGAATCACACTTTGCAGATGCCAAGTTCTACATGGATGAAGAGACGGTACCCGAAGCCCTTCCGGAAGAGATCAAATCCACGGGCAGAGCAGCACCTAAAAAGCAGGAGTGGCAAGCCATGCCTAAAAAGCAAAAAGAGCAGGCCGTGCCATCTTCAAGCAAAGACGATGACGAGCTTGCTAAACCTGCAACAACCAAAGGGAGTAGGATGCCGTCAGAAGGACCGAACGCACCCATATTCCGGTATATCCCAATGTCAAGAAGAAAGAATGGTCAATCTCCATTCGAAACTAGAAAAGCCGAGACACAGTGGCACACGGATAATGTGAACTTGCTCAAGACAAATGCAGTTTTGCCTTTGACACAGCTCGGGGGTGCTAAGGTCGCAAGACTACCACAAGGCTTCATAAAAGCTCTACCAAAGAAGGTGGAATCAAGCTTTCTTCCAACCAAGAGGACCGAGGAAGGTTTCGACCCTAACGCCTACAAACTCATGTCAAAGGCCGGGTACGACTTCGCTTCTTCTGCGGTGGCTGGAAAGAAGGTTTCAAACACTGTCAATGACGAAGAACGTAACCTCACCAAAACTCAAAAGAAGTTGAAGGAGCATGGTTACGGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTGTGATGATTTCAAGCCAAGCGAAAAACACTAGCACTCAATATGTCAGCATGAGCATTGAACAAGACCAAGAAGAGCCTAAACCCTCCCATCGGACGTCGGTCTTCGATAGGATGAGCCAGTCAAGCTCCAGAACTTCAGTGTTTAATCGCATTGGTGGTCAAGACCGAACCTCTGTCTTCAAGAGGCTTAAAGCGCCGACATCCCAAAGCTCTGTTTTGAAAGGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

413

Amino Acids

45.48

Weight (kDa)

9.65

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1106
Acc36I ACCTGC 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 1 cut(s) 872
AclWI GGATC 5 cut(s) 94, 136, 235, 248, 307
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 1128
AcyI GRCGYC 1 cut(s) 1103
AfaI GTAC 2 cut(s) 393, 854
AfiI CCNNNNNNNGG 3 cut(s) 563, 585, 1098
AgsI TTSAA 7 cut(s) 501, 894, 946, 1020, 1067, 1189, 1228
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 8 cut(s) 169, 219, 520, 712, 758, 783, 1134, 1218
AluI AGCT 8 cut(s) 169, 219, 520, 712, 758, 783, 1134, 1218
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 380, 641
AlwI GGATC 5 cut(s) 94, 136, 235, 248, 307
Ama87I CYCGRG 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 3 cut(s) 21, 486, 846
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 391
AspLEI GCGC 1 cut(s) 1204
AspS9I GGNCC 2 cut(s) 566, 801
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 7 cut(s) 82, 176, 266, 322, 328, 332, 916
AsuII TTCGAA 1 cut(s) 630
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 2 cut(s) 566, 801
BamHI GGATCC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 171
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BbsI GAAGAC 3 cut(s) 238, 1102, 1177
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 446
BccI CCATC 3 cut(s) 5, 502, 1104
BceAI ACGGC 4 cut(s) 75, 247, 473, 541
BciT130I CCWGG 1 cut(s) 104
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 380, 641
BfaI CTAG 2 cut(s) 636, 1038
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 1205
BfuAI ACCTGC 1 cut(s) 538
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 104, 850
Bme18I GGWCC 2 cut(s) 566, 801
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 2 cut(s) 566, 801
BmiI GGNNCC 2 cut(s) 242, 393
BmrFI CCNGG 2 cut(s) 104, 850
BmsI GCATC 4 cut(s) 72, 190, 352, 543
BoxI GACNNNNGTC 1 cut(s) 1106
BpiI GAAGAC 3 cut(s) 238, 1102, 1177
BpmI CTGGAG 1 cut(s) 1120
Bpu10I CCTNAGC 2 cut(s) 86, 723
Bpu14I TTCGAA 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 850
BsaAI YACGTR 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 1103
BsaJI CCNNGG 7 cut(s) 103, 115, 159, 236, 316, 423, 804
BsaWI WCCGGW 2 cut(s) 406, 585
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 585, 1098
Bse1I ACTGG 1 cut(s) 1126
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 7 cut(s) 103, 115, 159, 236, 316, 423, 804
BseGI GGATG 5 cut(s) 16, 385, 558, 1125, 1208
BseLI CCNNNNNNNGG 3 cut(s) 563, 585, 1098
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 1126
BseXI GCAGC 1 cut(s) 446
BshFI GGCC 3 cut(s) 23, 488, 848
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 4 cut(s) 407, 586, 849, 981
BslI CCNNNNNNNGG 3 cut(s) 563, 585, 1098
BsmAI GTCTC 2 cut(s) 380, 641
BsmBI CGTCTC 1 cut(s) 380
BsnI GGCC 3 cut(s) 23, 488, 848
BsoBI CYCGRG 1 cut(s) 713
Bsp119I TTCGAA 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 171
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 5 cut(s) 99, 141, 240, 312, 414
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 872
BspANI GGCC 3 cut(s) 23, 488, 848
BspCNI CTCAG 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 242, 393
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 5 cut(s) 94, 136, 235, 248, 307
BspQI GCTCTTC 1 cut(s) 1074
BspT104I TTCGAA 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 391
BsrI ACTGG 1 cut(s) 1126
BssECI CCNNGG 7 cut(s) 103, 115, 159, 236, 316, 423, 804
BssMI GATC 5 cut(s) 99, 141, 240, 312, 414
BssNI GRCGYC 1 cut(s) 1103
BssT1I CCWWGG 4 cut(s) 115, 159, 236, 316
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 391, 654, 901
Bst6I CTCTTC 3 cut(s) 378, 405, 1074
BstACI GRCGYC 1 cut(s) 1103
BstAPI GCANNNNNTGC 2 cut(s) 463, 490
BstBAI YACGTR 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 630
BstC8I GCNNGC 4 cut(s) 221, 459, 486, 522
BstDEI CTNAG 3 cut(s) 86, 226, 723
BstDSI CCRYGG 2 cut(s) 159, 423
BstF5I GGATG 5 cut(s) 16, 385, 558, 1125, 1208
BstH2I RGCGCY 1 cut(s) 1205
BstHHI GCGC 1 cut(s) 1204
BstKTI GATC 5 cut(s) 102, 144, 243, 315, 417
BstMAI GTCTC 2 cut(s) 380, 641
BstMBI GATC 5 cut(s) 99, 141, 240, 312, 414
BstNI CCWGG 1 cut(s) 104
BstPAI GACNNNNGTC 1 cut(s) 1106
BstSCI CCNGG 2 cut(s) 102, 848
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 446
BstV2I GAAGAC 3 cut(s) 238, 1102, 1177
BstX2I RGATCY 1 cut(s) 240
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 3 cut(s) 23, 488, 848
BtgI CCRYGG 2 cut(s) 159, 423
BtsCI GGATG 5 cut(s) 16, 385, 558, 1125, 1208
BtsIMutI CAGTG 3 cut(s) 659, 897, 1152
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 4 cut(s) 221, 459, 486, 522
CfoI GCGC 1 cut(s) 1204
Cfr13I GGNCC 2 cut(s) 566, 801
Csp6I GTAC 2 cut(s) 392, 853
CspCI CAANNNNNGTGG 2 cut(s) 753, 788
CviAII CATG 8 cut(s) 34, 139, 160, 376, 463, 838, 953, 1057
CviQI GTAC 2 cut(s) 392, 853
DdeI CTNAG 3 cut(s) 86, 226, 723
DpnI GATC 5 cut(s) 101, 143, 242, 314, 416
DpnII GATC 5 cut(s) 99, 141, 240, 312, 414
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 3 cut(s) 378, 405, 1074
EarI CTCTTC 3 cut(s) 378, 405, 1074
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 4 cut(s) 115, 159, 236, 316
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 566, 801
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 1128
Eco88I CYCGRG 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 4 cut(s) 115, 159, 236, 316
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 4 cut(s) 115, 159, 236, 316
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 8 cut(s) 37, 142, 163, 379, 466, 841, 956, 1060
FalI AAGNNNNNCTT 2 cut(s) 969, 1001
FatI CATG 8 cut(s) 33, 138, 159, 375, 462, 837, 952, 1056
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 5 cut(s) 23, 392, 565, 1132, 1195
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 636, 1038
GlaI GCGC 1 cut(s) 1203
GluI GCNGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 1120
HaeII RGCGCY 1 cut(s) 1205
HaeIII GGCC 3 cut(s) 23, 488, 848
HapII CCGG 4 cut(s) 407, 586, 849, 981
HhaI GCGC 1 cut(s) 1204
Hin1I GRCGYC 1 cut(s) 1103
Hin1II CATG 8 cut(s) 37, 142, 163, 379, 466, 841, 956, 1060
Hin6I GCGC 1 cut(s) 1202
HinP1I GCGC 1 cut(s) 1202
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HindIII AAGCTT 1 cut(s) 781
HinfI GANTC 2 cut(s) 347, 776
HpaII CCGG 4 cut(s) 407, 586, 849, 981
HphI GGTGA 7 cut(s) 82, 176, 266, 322, 328, 332, 916
Hpy166II GTNNAC 3 cut(s) 267, 673, 967
Hpy188I TCNGA 3 cut(s) 146, 562, 1101
Hpy188III TCNNGA 6 cut(s) 407, 603, 682, 1137, 1169, 1189
Hpy8I GTNNAC 3 cut(s) 267, 673, 967
Hpy99I CGWCG 1 cut(s) 1108
HpyAV CCTTC 9 cut(s) 281, 293, 301, 413, 557, 763, 803, 880, 940
HpyCH4III ACNGT 3 cut(s) 391, 654, 901
HpyCH4IV ACGT 3 cut(s) 192, 916, 1103
HpyCH4V TGCA 5 cut(s) 203, 359, 533, 692, 1004
HpyF3I CTNAG 3 cut(s) 86, 226, 723
HpySE526I ACGT 3 cut(s) 192, 916, 1103
Hsp92I GRCGYC 1 cut(s) 1103
Hsp92II CATG 8 cut(s) 37, 142, 163, 379, 466, 841, 956, 1060
HspAI GCGC 1 cut(s) 1202
Kpn2I TCCGGA 1 cut(s) 406
KpnI GGTACC 1 cut(s) 395
Kzo9I GATC 5 cut(s) 99, 141, 240, 312, 414
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 2 cut(s) 949, 1139
Lsp1109I GCAGC 1 cut(s) 446
LweI GCATC 4 cut(s) 72, 190, 352, 543
MaeI CTAG 2 cut(s) 636, 1038
MaeII ACGT 3 cut(s) 192, 916, 1103
MaeIII GTNAC 2 cut(s) 917, 956
MalI GATC 5 cut(s) 101, 143, 242, 314, 416
MboI GATC 5 cut(s) 99, 141, 240, 312, 414
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 195, 287
MmeI TCCRAC 1 cut(s) 815
MnlI CCTC 7 cut(s) 113, 792, 799, 932, 1102, 1185, 1189
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 4 cut(s) 111, 1152, 1197, 1237
MslI CAYNNNNRTG 2 cut(s) 68, 249
MspI CCGG 4 cut(s) 407, 586, 849, 981
MspR9I CCNGG 2 cut(s) 104, 850
MvaI CCWGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 850
NcoI CCATGG 1 cut(s) 159
NdeII GATC 5 cut(s) 99, 141, 240, 312, 414
NlaIII CATG 8 cut(s) 37, 142, 163, 379, 466, 841, 956, 1060
NlaIV GGNNCC 2 cut(s) 242, 393
NmeAIII GCCGAG 1 cut(s) 670
NspV TTCGAA 1 cut(s) 630
PciSI GCTCTTC 1 cut(s) 1074
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 347, 776
PkrI GCNGC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 193
PshAI GACNNNNGTC 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 242, 393
PspPI GGNCC 2 cut(s) 566, 801
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 2 cut(s) 393, 854
RsaNI GTAC 2 cut(s) 392, 853
RseI CAYNNNNRTG 2 cut(s) 68, 249
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 4 cut(s) 111, 1152, 1197, 1237
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 5 cut(s) 99, 141, 240, 312, 414
Sau96I GGNCC 2 cut(s) 566, 801
ScrFI CCNGG 2 cut(s) 104, 850
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 4 cut(s) 72, 190, 352, 543
SfcI CTRYAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 630
SinI GGWCC 2 cut(s) 566, 801
SmiMI CAYNNNNRTG 2 cut(s) 68, 249
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 2 cut(s) 195, 287
SsiI CCGC 1 cut(s) 872
SspMI CTAG 2 cut(s) 636, 1038
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 102, 848
StyI CCWWGG 4 cut(s) 115, 159, 236, 316
TaaI ACNGT 3 cut(s) 391, 654, 901
TaiI ACGT 3 cut(s) 195, 919, 1106
TaqI TCGA 3 cut(s) 630, 816, 1113
TaqII GACCGA 4 cut(s) 583, 818, 1096, 1188
TasI AATT 2 cut(s) 195, 287
TfiI GAWTC 2 cut(s) 347, 776
Tru1I TTAA 4 cut(s) 111, 1152, 1197, 1237
Tru9I TTAA 4 cut(s) 111, 1152, 1197, 1237
TscAI CASTG 3 cut(s) 659, 904, 1152
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 3 cut(s) 90, 396, 739
TspGWI ACGGA 2 cut(s) 677, 975
TspRI CASTG 3 cut(s) 659, 904, 1152
VpaK11BI GGWCC 2 cut(s) 566, 801
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 2 cut(s) 636, 1038
ZraI GACGTC 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.