pycom16g24720

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
26352172 .. 26354550
2379 bp
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UTR
Exon/CDS
Intron
pycom16g24720.3

Sequence Viewer

Length: 495 bp
ATGCCGTCAGAAGGACCGAACGCACCCATATTCCGGTATATCCCGATGTCAAGAAGAAAGAATGGTCAATCTCCATTCGAAACTAGAAAAGCCGACACACAGTGGCACACGGATAACGTGAAGTTGCTCAAGACGAATGCAGTTTTGCCTCTGACACAGCTAGGGGGTGCTAAGGCCGCAAGACTACCACAAGGCTTCATAAAAGCTCTACCAAAGAAGGTGGAATCAAGCTTTCTTCCAACCAAGAGGACCGAGGAAGGTTTCGACCCTAACGCCTACAAACTCATGTCAAAGGCCGGGTACAACTTCGCTTCTTCTGCGGTGGCTGGAAAGAAGGTTTCAAACATTGTCAATGACGAAGAACGTAACCTAACCAAAACTCAAAAGAAGTTGAAGGAGCATGGTTACGGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTGTGATGATTTCAAATCGTTCATGCTACACAAAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

10.0

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 177, 320
AdeI CACNNNGTG 1 cut(s) 102
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 11, 33
AgsI TTSAA 3 cut(s) 342, 394, 468
AluBI AGCT 3 cut(s) 160, 206, 231
AluI AGCT 3 cut(s) 160, 206, 231
AoxI GGCC 2 cut(s) 174, 294
AspS9I GGNCC 2 cut(s) 14, 249
AsuC2I CCSGG 1 cut(s) 298
AsuII TTCGAA 1 cut(s) 78
AvaII GGWCC 2 cut(s) 14, 249
BcnI CCSGG 1 cut(s) 298
BfaI CTAG 2 cut(s) 84, 161
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 2 cut(s) 14, 249
BmgT120I GGNCC 2 cut(s) 14, 249
BmrFI CCNGG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 33
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 11, 33
BshFI GGCC 2 cut(s) 176, 296
BsiSI CCGG 3 cut(s) 34, 297, 429
BslI CCNNNNNNNGG 2 cut(s) 11, 33
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 176, 296
Bsp119I TTCGAA 1 cut(s) 78
BspACI CCGC 2 cut(s) 177, 320
BspANI GGCC 2 cut(s) 176, 296
BspT104I TTCGAA 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 176, 317
BstSCI CCNGG 1 cut(s) 296
BsuRI GGCC 2 cut(s) 176, 296
BtsIMutI CAGTG 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 14, 249
Csp6I GTAC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 3 cut(s) 286, 401, 477
CviJI RGCY 9 cut(s) 92, 160, 176, 195, 206, 231, 296, 326, 428
CviKI_1 RGCY 9 cut(s) 92, 160, 176, 195, 206, 231, 296, 326, 428
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 14, 249
FaeI CATG 3 cut(s) 289, 404, 480
FaiI YATR 6 cut(s) 29, 39, 200, 287, 402, 478
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 3 cut(s) 285, 400, 476
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 84, 161
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 176, 296
HapII CCGG 3 cut(s) 34, 297, 429
Hin1II CATG 3 cut(s) 289, 404, 480
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 1 cut(s) 224
HpaII CCGG 3 cut(s) 34, 297, 429
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 2 cut(s) 10, 153
Hpy188III TCNNGA 3 cut(s) 43, 51, 130
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 5 cut(s) 5, 211, 251, 328, 388
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 3 cut(s) 117, 364, 491
HpyCH4V TGCA 2 cut(s) 140, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 317
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 3 cut(s) 117, 364, 491
Hsp92II CATG 3 cut(s) 289, 404, 480
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 5 cut(s) 47, 310, 312, 442, 468
MaeI CTAG 2 cut(s) 84, 161
MaeII ACGT 3 cut(s) 117, 364, 491
MaeIII GTNAC 2 cut(s) 365, 404
MboII GAAGA 4 cut(s) 66, 227, 306, 371
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 3 cut(s) 159, 240, 247
MspI CCGG 3 cut(s) 34, 297, 429
MspR9I CCNGG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 176, 317
NciI CCSGG 1 cut(s) 298
NlaIII CATG 3 cut(s) 289, 404, 480
NspV TTCGAA 1 cut(s) 78
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 14, 249
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SatI GCNGC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 14, 249
ScrFI CCNGG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 2 cut(s) 14, 249
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 2 cut(s) 177, 320
SspMI CTAG 2 cut(s) 84, 161
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 3 cut(s) 120, 367, 494
TaqI TCGA 2 cut(s) 78, 264
TaqII GACCGA 2 cut(s) 31, 266
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 187, 465
TspGWI ACGGA 2 cut(s) 125, 423
TspRI CASTG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 14, 249
XspI CTAG 2 cut(s) 84, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.