Rmu_sc0029049.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029049.1
OG0000128
Physical Location & Seq
Forward (+)
1 .. 1088
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029049.1_g000001.1.cds

Sequence Viewer

Length: 1088 bp
gtgatactaaaccattcaataaagctgaatcttactttgcggattccaagttctacatggatgatgaaataataaaggaagttctcccagttggagtaccctctacagggaagactgcagaagtgcgtaataaggaagtagaatccagcatggcaagaaatcacaatgaggaaccacagaaagtttcgttggaaaataatgtggcagcttcaaagaacaaaatcaactcctctgctccagtccttcgttatgtgccaaagtctaggcaaaaagaaggggaatctccttttgtggaggcaaatgaacaagaacgtccgcgaaagttagatgagaaggacgtaaaattactaaaagaaacatcaaccataccgttaacaaagttgagcaacgcaactccaaccaagcagctgctaaaggggtttgtcaaaccaattcaaggcaagacagagcatgggacacttcttgacaaaaggataaaggaaggattcgactctaacccttacaagctgctagcaaaggctggatatgactttggttcattaagcaaggaatgtggccaagtcatcccttgtaaaaaggtgcatgagcttaatgaatctcaaaggaggttgagagagcaaggatgcatagctaaccctgctaaagcaggtcttggttttgtgccaggcaaaccaattaaaatttcaggaagaagaaaagttgcgaaggcaaacacgcaacacattagtgttgaagtaatagaagaagaggcacaagaatctaaatctgcctcttgcgtttcggcatttgatcgcattcatcctaattctcaagctgcggtgcctgaacgagttgatgagttggcgcctcgagtttctgtatttgatcgtgttgacacatcaacaagccgaatctcagttttcaatcgcatcacccaaacgaccactcgagcttccgtgttcaataggttgtcatctttcgatgaaggaaataagaaatctgagtcagcccctcgaaattcggcacttgagaggatacaagcacccaaagaccaacaaaggcaaaagagaaagaggatcaatgaccaaggaaacgacaaagaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

361

Amino Acids

40.33

Weight (kDa)

9.47

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 637
AccB1I GGYRCC 2 cut(s) 819, 843
AccII CGCG 1 cut(s) 318
AciI CCGC 3 cut(s) 40, 316, 817
AclWI GGATC 1 cut(s) 1063
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 2 cut(s) 680, 996
AcyI GRCGYC 1 cut(s) 844
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 106, 107, 436
AgsI TTSAA 6 cut(s) 18, 212, 436, 733, 903, 942
AjnI CCWGG 1 cut(s) 663
AjuI GAANNNNNNNTTGG 4 cut(s) 172, 204, 666, 698
AleI CACNNNNGTG 1 cut(s) 725
AloI GAACNNNNNNTCC 2 cut(s) 34, 66
AluBI AGCT 8 cut(s) 25, 208, 408, 507, 588, 631, 814, 931
AluI AGCT 8 cut(s) 25, 208, 408, 507, 588, 631, 814, 931
AlwI GGATC 1 cut(s) 1063
Ama87I CYCGRG 2 cut(s) 848, 926
AoxI GGCC 1 cut(s) 555
ApeKI GCWGC 5 cut(s) 205, 405, 408, 507, 814
ApoI RAATTY 2 cut(s) 680, 996
AspLEI GCGC 1 cut(s) 846
AsuHPI GGTGA 1 cut(s) 903
AsuNHI GCTAGC 1 cut(s) 510
AvaI CYCGRG 2 cut(s) 848, 926
BalI TGGCCA 1 cut(s) 557
BanI GGYRCC 2 cut(s) 819, 843
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 217, 395, 417, 494, 801
BciT130I CCWGG 1 cut(s) 665
BciVI GTATCC 1 cut(s) 1007
BfaI CTAG 2 cut(s) 263, 511
BfmI CTRYAG 2 cut(s) 104, 116
BfoI RGCGCY 1 cut(s) 847
BfuAI ACCTGC 1 cut(s) 637
BfuI GTATCC 1 cut(s) 1007
BisI GCNGC 5 cut(s) 206, 406, 409, 508, 815
BlsI GCNGC 5 cut(s) 207, 407, 410, 509, 816
Bme1390I CCNGG 1 cut(s) 665
BmeT110I CYCGRG 2 cut(s) 848, 926
BmiI GGNNCC 3 cut(s) 173, 821, 845
BmrFI CCNGG 1 cut(s) 665
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 2 cut(s) 613, 917
BmtI GCTAGC 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 794, 1027
BsaHI GRCGYC 1 cut(s) 844
BsaJI CCNNGG 1 cut(s) 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 107, 436
Bse1I ACTGG 2 cut(s) 88, 238
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 1065
BseGI GGATG 4 cut(s) 66, 563, 628, 798
BseLI CCNNNNNNNGG 3 cut(s) 106, 107, 436
BseMII CTCAG 2 cut(s) 908, 971
BseNI ACTGG 2 cut(s) 88, 238
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 5 cut(s) 217, 395, 417, 494, 801
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 557
BshNI GGYRCC 2 cut(s) 819, 843
BsiHKCI CYCGRG 2 cut(s) 848, 926
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 106, 107, 436
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 1 cut(s) 557
BsoBI CYCGRG 2 cut(s) 848, 926
Bsp143I GATC 3 cut(s) 789, 864, 1055
BspACI CCGC 3 cut(s) 40, 316, 817
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 2 cut(s) 907, 972
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 173, 821, 845
BspMAI CTGCAG 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 637
BspOI GCTAGC 1 cut(s) 514
BspPI GGATC 1 cut(s) 1063
BspT107I GGYRCC 2 cut(s) 819, 843
BsrI ACTGG 2 cut(s) 88, 238
BssECI CCNNGG 1 cut(s) 1065
BssMI GATC 3 cut(s) 789, 864, 1055
BssNI GRCGYC 1 cut(s) 844
BssT1I CCWWGG 1 cut(s) 1065
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 1 cut(s) 740
BstACI GRCGYC 1 cut(s) 844
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 2 cut(s) 894, 980
BstF5I GGATG 4 cut(s) 66, 563, 628, 798
BstFNI CGCG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 1 cut(s) 846
BstKTI GATC 3 cut(s) 792, 867, 1058
BstMBI GATC 3 cut(s) 789, 864, 1055
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 663
BstSFI CTRYAG 2 cut(s) 104, 116
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 5 cut(s) 217, 395, 417, 494, 801
BstV2I GAAGAC 1 cut(s) 118
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 1 cut(s) 557
BtsCI GGATG 4 cut(s) 66, 563, 628, 798
BveI ACCTGC 1 cut(s) 637
Cac8I GCNNGC 1 cut(s) 512
CfoI GCGC 1 cut(s) 846
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviAII CATG 4 cut(s) 57, 150, 451, 583
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 894, 980
DinI GGCGCC 1 cut(s) 845
DpnI GATC 3 cut(s) 791, 866, 1057
DpnII GATC 3 cut(s) 789, 864, 1055
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 740
EarI CTCTTC 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 1065
Eco88I CYCGRG 2 cut(s) 848, 926
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 1065
EcoT22I ATGCAT 1 cut(s) 628
EgeI GGCGCC 1 cut(s) 845
EheI GGCGCC 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 1065
FaeI CATG 4 cut(s) 60, 153, 454, 586
FaiI YATR 8 cut(s) 58, 151, 251, 367, 452, 527, 584, 628
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FaqI GGGAC 1 cut(s) 468
FatI CATG 4 cut(s) 56, 149, 450, 582
Fnu4HI GCNGC 5 cut(s) 206, 406, 409, 508, 815
FokI GGATG 4 cut(s) 73, 550, 635, 785
Fsp4HI GCNGC 5 cut(s) 206, 406, 409, 508, 815
FspBI CTAG 2 cut(s) 263, 511
GlaI GCGC 1 cut(s) 845
GluI GCNGC 5 cut(s) 206, 406, 409, 508, 815
GsuI CTGGAG 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 847
HaeIII GGCC 1 cut(s) 557
HhaI GCGC 1 cut(s) 846
Hin1I GRCGYC 1 cut(s) 844
Hin1II CATG 4 cut(s) 60, 153, 454, 586
Hin6I GCGC 1 cut(s) 844
HinP1I GCGC 1 cut(s) 844
HincII GTYRAC 2 cut(s) 374, 873
HindII GTYRAC 2 cut(s) 374, 873
HpaI GTTAAC 1 cut(s) 374
HphI GGTGA 1 cut(s) 903
Hpy166II GTNNAC 2 cut(s) 374, 873
Hpy188I TCNGA 2 cut(s) 981, 1087
Hpy188III TCNNGA 2 cut(s) 463, 686
Hpy8I GTNNAC 2 cut(s) 374, 873
HpyAV CCTTC 6 cut(s) 253, 268, 327, 475, 699, 958
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 2 cut(s) 312, 338
HpyCH4V TGCA 3 cut(s) 118, 582, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 2 cut(s) 894, 980
HpySE526I ACGT 2 cut(s) 312, 338
Hsp92I GRCGYC 1 cut(s) 844
Hsp92II CATG 4 cut(s) 60, 153, 454, 586
HspAI GCGC 1 cut(s) 844
KasI GGCGCC 1 cut(s) 843
KspAI GTTAAC 1 cut(s) 374
Kzo9I GATC 3 cut(s) 789, 864, 1055
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 5 cut(s) 217, 395, 417, 494, 801
LweI GCATC 2 cut(s) 613, 917
MaeI CTAG 2 cut(s) 263, 511
MaeII ACGT 2 cut(s) 312, 338
MalI GATC 3 cut(s) 791, 866, 1057
MboI GATC 3 cut(s) 789, 864, 1055
MboII GAAGA 5 cut(s) 123, 701, 704, 754, 757
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 6 cut(s) 343, 431, 674, 680, 804, 996
MluNI TGGCCA 1 cut(s) 557
Mly113I GGCGCC 1 cut(s) 844
MlyI GAGTC 2 cut(s) 484, 991
MmeI TCCRAC 3 cut(s) 72, 170, 421
Mox20I TGGCCA 1 cut(s) 557
Mph1103I ATGCAT 1 cut(s) 628
MscI TGGCCA 1 cut(s) 557
MseI TTAA 4 cut(s) 373, 541, 590, 677
MslI CAYNNNNRTG 1 cut(s) 725
Msp20I TGGCCA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 794
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 637
NarI GGCGCC 1 cut(s) 844
NdeII GATC 3 cut(s) 789, 864, 1055
NheI GCTAGC 1 cut(s) 510
NlaIII CATG 4 cut(s) 60, 153, 454, 586
NlaIV GGNNCC 3 cut(s) 173, 821, 845
NsiI ATGCAT 1 cut(s) 628
OliI CACNNNNGTG 1 cut(s) 725
PaeR7I CTCGAG 2 cut(s) 848, 926
PctI GAATGC 1 cut(s) 794
PfeI GAWTC 8 cut(s) 28, 43, 142, 280, 485, 595, 757, 890
PkrI GCNGC 5 cut(s) 207, 407, 410, 509, 816
PleI GAGTC 2 cut(s) 484, 990
PluTI GGCGCC 1 cut(s) 847
PpsI GAGTC 2 cut(s) 484, 990
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 3 cut(s) 173, 821, 845
PspXI VCTCGAGB 2 cut(s) 848, 926
PstI CTGCAG 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 4 cut(s) 373, 541, 590, 677
SatI GCNGC 5 cut(s) 206, 406, 409, 508, 815
Sau3AI GATC 3 cut(s) 789, 864, 1055
SchI GAGTC 2 cut(s) 484, 991
ScrFI CCNGG 1 cut(s) 665
SfaNI GCATC 2 cut(s) 613, 917
SfcI CTRYAG 2 cut(s) 104, 116
SfoI GGCGCC 1 cut(s) 845
Sfr274I CTCGAG 2 cut(s) 848, 926
SlaI CTCGAG 2 cut(s) 848, 926
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 4 cut(s) 809, 848, 926, 1006
SmoI CTYRAG 4 cut(s) 809, 848, 926, 1006
Sse9I AATT 6 cut(s) 343, 431, 674, 680, 804, 996
SsiI CCGC 3 cut(s) 40, 316, 817
SspDI GGCGCC 1 cut(s) 843
SspMI CTAG 2 cut(s) 263, 511
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 2 cut(s) 315, 341
TaqI TCGA 5 cut(s) 488, 849, 927, 959, 993
TasI AATT 6 cut(s) 343, 431, 674, 680, 804, 996
TfiI GAWTC 8 cut(s) 28, 43, 142, 280, 485, 595, 757, 890
Tru1I TTAA 4 cut(s) 373, 541, 590, 677
Tru9I TTAA 4 cut(s) 373, 541, 590, 677
TseI GCWGC 5 cut(s) 205, 405, 408, 507, 814
TspDTI ATGAA 6 cut(s) 80, 317, 527, 608, 787, 977
TspGWI ACGGA 1 cut(s) 924
XapI RAATTY 2 cut(s) 680, 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XhoI CTCGAG 2 cut(s) 848, 926
XspI CTAG 2 cut(s) 263, 511
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.