Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 193 |
| Acc36I | ACCTGC | 1 cut(s) | 1091 |
| AccB1I | GGYRCC | 1 cut(s) | 794 |
| AciI | CCGC | 3 cut(s) | 43, 368, 395 |
| AclI | AACGTT | 1 cut(s) | 243 |
| AclWI | GGATC | 2 cut(s) | 535, 932 |
| AcsI | RAATTY | 1 cut(s) | 556 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 1 cut(s) | 956 |
| AfeI | AGCGCT | 1 cut(s) | 790 |
| AflIII | ACRYGT | 1 cut(s) | 516 |
| AjiI | CACGTC | 3 cut(s) | 519, 931, 1060 |
| AluBI | AGCT | 7 cut(s) | 406, 460, 569, 589, 620, 679, 1018 |
| AluI | AGCT | 7 cut(s) | 406, 460, 569, 589, 620, 679, 1018 |
| AlwI | GGATC | 2 cut(s) | 535, 932 |
| Ama87I | CYCGRG | 1 cut(s) | 639 |
| Aor51HI | AGCGCT | 1 cut(s) | 790 |
| AoxI | GGCC | 1 cut(s) | 369 |
| ApeKI | GCWGC | 1 cut(s) | 676 |
| ApoI | RAATTY | 1 cut(s) | 556 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 300, 989 |
| AspLEI | GCGC | 2 cut(s) | 323, 791 |
| AspS9I | GGNCC | 2 cut(s) | 260, 370 |
| AsuHPI | GGTGA | 3 cut(s) | 349, 461, 815 |
| AsuII | TTCGAA | 1 cut(s) | 251 |
| AvaI | CYCGRG | 1 cut(s) | 639 |
| AvaII | GGWCC | 1 cut(s) | 260 |
| BanI | GGYRCC | 1 cut(s) | 794 |
| BbsI | GAAGAC | 1 cut(s) | 315 |
| BbvI | GCAGC | 1 cut(s) | 688 |
| BccI | CCATC | 4 cut(s) | 7, 569, 728, 794 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 809, 843, 1105, 1139 |
| BclI | TGATCA | 1 cut(s) | 805 |
| BfaI | CTAG | 4 cut(s) | 305, 461, 566, 680 |
| BfoI | RGCGCY | 1 cut(s) | 792 |
| BfuAI | ACCTGC | 1 cut(s) | 1091 |
| BglII | AGATCT | 1 cut(s) | 1003 |
| BisI | GCNGC | 3 cut(s) | 369, 396, 677 |
| BlsI | GCNGC | 3 cut(s) | 370, 397, 678 |
| Bme18I | GGWCC | 1 cut(s) | 260 |
| BmeT110I | CYCGRG | 1 cut(s) | 639 |
| BmgBI | CACGTC | 3 cut(s) | 519, 931, 1060 |
| BmgT120I | GGNCC | 2 cut(s) | 260, 370 |
| BmiI | GGNNCC | 2 cut(s) | 634, 796 |
| BmrI | ACTGGG | 1 cut(s) | 376 |
| BmsI | GCATC | 3 cut(s) | 452, 1095, 1124 |
| BmuI | ACTGGG | 1 cut(s) | 376 |
| BpiI | GAAGAC | 1 cut(s) | 315 |
| Bpu10I | CCTNAGC | 1 cut(s) | 77 |
| Bpu14I | TTCGAA | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 1 cut(s) | 196 |
| Bsa29I | ATCGAT | 1 cut(s) | 1115 |
| BsaBI | GATNNNNATC | 1 cut(s) | 804 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaWI | WCCGGW | 1 cut(s) | 976 |
| Bse1I | ACTGG | 2 cut(s) | 382, 706 |
| Bse8I | GATNNNNATC | 1 cut(s) | 804 |
| BseCI | ATCGAT | 1 cut(s) | 1115 |
| BseGI | GGATG | 4 cut(s) | 436, 561, 973, 1139 |
| BseJI | GATNNNNATC | 1 cut(s) | 804 |
| BseMII | CTCAG | 1 cut(s) | 1079 |
| BseNI | ACTGG | 2 cut(s) | 382, 706 |
| BseXI | GCAGC | 1 cut(s) | 688 |
| BseYI | CCCAGC | 1 cut(s) | 1126 |
| Bsh1285I | CGRYCG | 1 cut(s) | 147 |
| BshFI | GGCC | 1 cut(s) | 371 |
| BshNI | GGYRCC | 1 cut(s) | 794 |
| BshVI | ATCGAT | 1 cut(s) | 1115 |
| BsiEI | CGRYCG | 1 cut(s) | 147 |
| BsiHKCI | CYCGRG | 1 cut(s) | 639 |
| BsiSI | CCGG | 1 cut(s) | 977 |
| BsmI | GAATGC | 1 cut(s) | 699 |
| BsnI | GGCC | 1 cut(s) | 371 |
| BsoBI | CYCGRG | 1 cut(s) | 639 |
| Bsp119I | TTCGAA | 1 cut(s) | 251 |
| Bsp143I | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| BspACI | CCGC | 3 cut(s) | 43, 368, 395 |
| BspANI | GGCC | 1 cut(s) | 371 |
| BspCNI | CTCAG | 1 cut(s) | 1078 |
| BspDI | ATCGAT | 1 cut(s) | 1115 |
| BspHI | TCATGA | 2 cut(s) | 177, 1011 |
| BspLI | GGNNCC | 2 cut(s) | 634, 796 |
| BspMI | ACCTGC | 1 cut(s) | 1091 |
| BspPI | GGATC | 2 cut(s) | 535, 932 |
| BspT104I | TTCGAA | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 794 |
| BsrI | ACTGG | 2 cut(s) | 382, 706 |
| BssMI | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 1 cut(s) | 962 |
| Bst6I | CTCTTC | 3 cut(s) | 285, 417, 912 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBI | TTCGAA | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 3 cut(s) | 793, 908, 1020 |
| BstDEI | CTNAG | 3 cut(s) | 77, 606, 1065 |
| BstEII | GGTNACC | 2 cut(s) | 704, 743 |
| BstF5I | GGATG | 4 cut(s) | 436, 561, 973, 1139 |
| BstH2I | RGCGCY | 1 cut(s) | 792 |
| BstHHI | GCGC | 2 cut(s) | 323, 791 |
| BstKTI | GATC | 5 cut(s) | 147, 530, 808, 940, 1006 |
| BstMBI | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| BstMCI | CGRYCG | 1 cut(s) | 147 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 377 |
| BstNSI | RCATGY | 1 cut(s) | 783 |
| BstPI | GGTNACC | 2 cut(s) | 704, 743 |
| BstV1I | GCAGC | 1 cut(s) | 688 |
| BstV2I | GAAGAC | 1 cut(s) | 315 |
| BstX2I | RGATCY | 1 cut(s) | 1003 |
| BstYI | RGATCY | 1 cut(s) | 1003 |
| Bsu15I | ATCGAT | 1 cut(s) | 1115 |
| BsuRI | GGCC | 1 cut(s) | 371 |
| BsuTUI | ATCGAT | 1 cut(s) | 1115 |
| BtgZI | GCGATG | 2 cut(s) | 429, 745 |
| BtrI | CACGTC | 3 cut(s) | 519, 931, 1060 |
| BtsCI | GGATG | 4 cut(s) | 436, 561, 973, 1139 |
| BtsIMutI | CAGTG | 1 cut(s) | 647 |
| BveI | ACCTGC | 1 cut(s) | 1091 |
| Cac8I | GCNNGC | 3 cut(s) | 793, 908, 1020 |
| CciI | TCATGA | 2 cut(s) | 177, 1011 |
| CfoI | GCGC | 2 cut(s) | 323, 791 |
| Cfr13I | GGNCC | 2 cut(s) | 260, 370 |
| ClaI | ATCGAT | 1 cut(s) | 1115 |
| CseI | GACGC | 2 cut(s) | 158, 899 |
| Csp6I | GTAC | 1 cut(s) | 955 |
| CviQI | GTAC | 1 cut(s) | 955 |
| DdeI | CTNAG | 3 cut(s) | 77, 606, 1065 |
| DpnI | GATC | 5 cut(s) | 146, 529, 807, 939, 1005 |
| DpnII | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| Eam1104I | CTCTTC | 3 cut(s) | 285, 417, 912 |
| EarI | CTCTTC | 3 cut(s) | 285, 417, 912 |
| Eco47I | GGWCC | 1 cut(s) | 260 |
| Eco47III | AGCGCT | 1 cut(s) | 790 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| Eco88I | CYCGRG | 1 cut(s) | 639 |
| Eco91I | GGTNACC | 2 cut(s) | 704, 743 |
| EcoO65I | GGTNACC | 2 cut(s) | 704, 743 |
| FauI | CCCGC | 1 cut(s) | 50 |
| FbaI | TGATCA | 1 cut(s) | 805 |
| Fnu4HI | GCNGC | 3 cut(s) | 369, 396, 677 |
| FokI | GGATG | 4 cut(s) | 443, 548, 960, 1146 |
| Fsp4HI | GCNGC | 3 cut(s) | 369, 396, 677 |
| FspBI | CTAG | 4 cut(s) | 305, 461, 566, 680 |
| GlaI | GCGC | 2 cut(s) | 322, 790 |
| GluI | GCNGC | 3 cut(s) | 369, 396, 677 |
| GsaI | CCCAGC | 1 cut(s) | 1130 |
| HaeII | RGCGCY | 1 cut(s) | 792 |
| HaeIII | GGCC | 1 cut(s) | 371 |
| HapII | CCGG | 1 cut(s) | 977 |
| HgaI | GACGC | 2 cut(s) | 158, 899 |
| HhaI | GCGC | 2 cut(s) | 323, 791 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin6I | GCGC | 2 cut(s) | 321, 789 |
| HinP1I | GCGC | 2 cut(s) | 321, 789 |
| HincII | GTYRAC | 1 cut(s) | 387 |
| HindII | GTYRAC | 1 cut(s) | 387 |
| HinfI | GANTC | 7 cut(s) | 92, 248, 301, 314, 482, 551, 842 |
| HpaII | CCGG | 1 cut(s) | 977 |
| HphI | GGTGA | 3 cut(s) | 349, 461, 815 |
| Hpy166II | GTNNAC | 2 cut(s) | 387, 469 |
| Hpy188I | TCNGA | 5 cut(s) | 60, 487, 538, 839, 847 |
| Hpy188III | TCNNGA | 8 cut(s) | 178, 305, 593, 639, 641, 914, 997, 1012 |
| Hpy8I | GTNNAC | 2 cut(s) | 387, 469 |
| Hpy99I | CGWCG | 1 cut(s) | 152 |
| HpyAV | CCTTC | 3 cut(s) | 128, 237, 421 |
| HpyCH4III | ACNGT | 1 cut(s) | 962 |
| HpyCH4IV | ACGT | 8 cut(s) | 190, 243, 354, 518, 653, 930, 1047, 1059 |
| HpyCH4V | TGCA | 9 cut(s) | 19, 328, 443, 499, 783, 906, 951, 1086, 1137 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 377 |
| HpyF3I | CTNAG | 3 cut(s) | 77, 606, 1065 |
| HpySE526I | ACGT | 8 cut(s) | 190, 243, 354, 518, 653, 930, 1047, 1059 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| HspAI | GCGC | 2 cut(s) | 321, 789 |
| Ksp22I | TGATCA | 1 cut(s) | 805 |
| Kzo9I | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| LmnI | GCTCC | 1 cut(s) | 411 |
| Lsp1109I | GCAGC | 1 cut(s) | 688 |
| LweI | GCATC | 3 cut(s) | 452, 1095, 1124 |
| MaeI | CTAG | 4 cut(s) | 305, 461, 566, 680 |
| MaeII | ACGT | 8 cut(s) | 190, 243, 354, 518, 653, 930, 1047, 1059 |
| MaeIII | GTNAC | 4 cut(s) | 49, 206, 704, 743 |
| MalI | GATC | 5 cut(s) | 146, 529, 807, 939, 1005 |
| MboI | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| MboII | GAAGA | 9 cut(s) | 81, 265, 272, 320, 412, 434, 525, 929, 1064 |
| MflI | RGATCY | 1 cut(s) | 1003 |
| MluCI | AATT | 8 cut(s) | 272, 291, 438, 556, 685, 728, 821, 893 |
| MlyI | GAGTC | 2 cut(s) | 101, 308 |
| MmeI | TCCRAC | 2 cut(s) | 218, 843 |
| MnlI | CCTC | 5 cut(s) | 136, 185, 288, 646, 723 |
| MroXI | GAANNNNTTC | 2 cut(s) | 300, 989 |
| MseI | TTAA | 2 cut(s) | 351, 1101 |
| MslI | CAYNNNNRTG | 2 cut(s) | 477, 933 |
| MspI | CCGG | 1 cut(s) | 977 |
| Mva1269I | GAATGC | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 377 |
| NdeII | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| NlaIV | GGNNCC | 2 cut(s) | 634, 796 |
| NspI | RCATGY | 1 cut(s) | 783 |
| NspV | TTCGAA | 1 cut(s) | 251 |
| PaeR7I | CTCGAG | 1 cut(s) | 639 |
| PagI | TCATGA | 2 cut(s) | 177, 1011 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 835 |
| PctI | GAATGC | 1 cut(s) | 699 |
| PdmI | GAANNNNTTC | 2 cut(s) | 300, 989 |
| PfeI | GAWTC | 5 cut(s) | 248, 301, 482, 551, 842 |
| PkrI | GCNGC | 3 cut(s) | 370, 397, 678 |
| Ple19I | CGATCG | 1 cut(s) | 147 |
| PleI | GAGTC | 2 cut(s) | 100, 308 |
| PpsI | GAGTC | 2 cut(s) | 100, 308 |
| Psp1406I | AACGTT | 1 cut(s) | 243 |
| PspEI | GGTNACC | 2 cut(s) | 704, 743 |
| PspFI | CCCAGC | 1 cut(s) | 1126 |
| PspN4I | GGNNCC | 2 cut(s) | 634, 796 |
| PspPI | GGNCC | 2 cut(s) | 260, 370 |
| PsuI | RGATCY | 1 cut(s) | 1003 |
| PvuI | CGATCG | 1 cut(s) | 147 |
| RsaI | GTAC | 1 cut(s) | 956 |
| RsaNI | GTAC | 1 cut(s) | 955 |
| RseI | CAYNNNNRTG | 2 cut(s) | 477, 933 |
| SaqAI | TTAA | 2 cut(s) | 351, 1101 |
| SatI | GCNGC | 3 cut(s) | 369, 396, 677 |
| Sau3AI | GATC | 5 cut(s) | 144, 527, 805, 937, 1003 |
| Sau96I | GGNCC | 2 cut(s) | 260, 370 |
| SchI | GAGTC | 2 cut(s) | 101, 308 |
| SfaNI | GCATC | 3 cut(s) | 452, 1095, 1124 |
| Sfr274I | CTCGAG | 1 cut(s) | 639 |
| SfuI | TTCGAA | 1 cut(s) | 251 |
| SinI | GGWCC | 1 cut(s) | 260 |
| SlaI | CTCGAG | 1 cut(s) | 639 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 477, 933 |
| SmlI | CTYRAG | 2 cut(s) | 211, 639 |
| SmoI | CTYRAG | 2 cut(s) | 211, 639 |
| Sse9I | AATT | 8 cut(s) | 272, 291, 438, 556, 685, 728, 821, 893 |
| SsiI | CCGC | 3 cut(s) | 43, 368, 395 |
| SspI | AATATT | 1 cut(s) | 947 |
| SspMI | CTAG | 4 cut(s) | 305, 461, 566, 680 |
| TaaI | ACNGT | 1 cut(s) | 962 |
| TaiI | ACGT | 8 cut(s) | 193, 246, 357, 521, 656, 933, 1050, 1062 |
| TaqI | TCGA | 7 cut(s) | 29, 114, 147, 251, 640, 774, 1115 |
| TaqII | GACCGA | 1 cut(s) | 959 |
| TasI | AATT | 8 cut(s) | 272, 291, 438, 556, 685, 728, 821, 893 |
| TauI | GCSGC | 2 cut(s) | 371, 398 |
| TfiI | GAWTC | 5 cut(s) | 248, 301, 482, 551, 842 |
| Tru1I | TTAA | 2 cut(s) | 351, 1101 |
| Tru9I | TTAA | 2 cut(s) | 351, 1101 |
| TscAI | CASTG | 1 cut(s) | 654 |
| TseI | GCWGC | 1 cut(s) | 676 |
| TspDTI | ATGAA | 7 cut(s) | 110, 194, 561, 760, 830, 1028, 1107 |
| TspRI | CASTG | 1 cut(s) | 654 |
| VpaK11BI | GGWCC | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 556 |
| XbaI | TCTAGA | 1 cut(s) | 304 |
| XceI | RCATGY | 1 cut(s) | 783 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 331 |
| XhoI | CTCGAG | 1 cut(s) | 639 |
| XmnI | GAANNNNTTC | 2 cut(s) | 300, 989 |
| XspI | CTAG | 4 cut(s) | 305, 461, 566, 680 |
| ZraI | GACGTC | 1 cut(s) | 191 |