pycom03g12320

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000128
Physical Location & Seq
Forward (+)
12803919 .. 12804485
567 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12320.1

Sequence Viewer

Length: 567 bp
ATGGTGGTTGACGTCAATCCCTTCCCCTCGATGACAATTGGCATGGTGGATGCTCATCTCCCTAAAAACAAAGGAAAAGGGAAGGCCGAATTCATCCCAGTACAACATGTCCGTAAGCAGATTGGTCAGCCGAGACTCAAGATTGATTTATTTTCAAATGTACCACCCACGAAGTCTTCAGGGCCGATCGTCGTCGAACCTATGTTAGGTTTTAGTTTCGAAGAAACTGATGAATCAATGGTTTTGTGCGATCGCTGTAAAACACGAATTGCCCTAACTAAACCTAAAGAGAGAACACTTCAGGCTCCAACTTCATGTCAGCTATCTATGGCCACAGCAAAACCTCTGAAGGTACTCGGTGCCGGCCAACGCCGGCAGGTGTTCGAGAGACTCGGCCCACATGTACAAGCAAAAGATCCAACCCCAGTCAGGCAACGTCTTGACTTTGACGCGCCATTCTATAATGAAAATTATTATTCGTGTAACTCCAGCAGTTCGAGTTCATCGGTGGGTCAAAAAACCTTCAATTACCTGGTGGCAGCCAAAAGAAGCAGCATGAAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

189

Amino Acids

20.95

Weight (kDa)

9.69

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
AatII GACGTC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 359
AccII CGCG 1 cut(s) 452
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 2 cut(s) 330, 364
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 3 cut(s) 162, 284, 368
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 4 cut(s) 102, 162, 354, 405
AfiI CCNNNNNNNGG 2 cut(s) 206, 429
AflIII ACRYGT 2 cut(s) 106, 400
AgsI TTSAA 2 cut(s) 156, 526
AjnI CCWGG 1 cut(s) 531
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 127, 382
AlwI GGATC 1 cut(s) 410
AoxI GGCC 5 cut(s) 84, 182, 330, 364, 394
ApeKI GCWGC 2 cut(s) 539, 552
ApoI RAATTY 1 cut(s) 89
AsiSI GCGATCGC 1 cut(s) 253
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 2 cut(s) 182, 395
AsuII TTCGAA 1 cut(s) 219
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 533
BcoDI GTCTC 2 cut(s) 127, 382
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 540, 553
BlsI GCNGC 2 cut(s) 541, 554
Bme1390I CCNGG 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 182, 395
BmiI GGNNCC 2 cut(s) 306, 361
BmrFI CCNGG 1 cut(s) 533
BmrI ACTGGG 2 cut(s) 92, 419
BmsI GCATC 1 cut(s) 40
BmuI ACTGGG 2 cut(s) 92, 419
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 472
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 429
Bse118I RCCGGY 2 cut(s) 362, 372
Bse1I ACTGG 2 cut(s) 98, 425
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 533
BseGI GGATG 2 cut(s) 55, 93
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 206, 429
BseNI ACTGG 2 cut(s) 98, 425
BseXI GCAGC 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 2 cut(s) 189, 253
BshFI GGCC 5 cut(s) 86, 184, 332, 366, 396
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 2 cut(s) 189, 253
BsiSI CCGG 2 cut(s) 363, 373
BslI CCNNNNNNNGG 2 cut(s) 206, 429
BsmAI GTCTC 2 cut(s) 127, 382
BsnI GGCC 5 cut(s) 86, 184, 332, 366, 396
Bsp119I TTCGAA 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 3 cut(s) 186, 250, 415
BspANI GGCC 5 cut(s) 86, 184, 332, 366, 396
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 2 cut(s) 306, 361
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 359
BsrFI RCCGGY 2 cut(s) 362, 372
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 2 cut(s) 98, 425
BssAI RCCGGY 2 cut(s) 362, 372
BssMI GATC 3 cut(s) 186, 250, 415
BssNI GRCGYC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 533
BstACI GRCGYC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 364, 374
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 55, 93
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 3 cut(s) 189, 253, 418
BstMAI GTCTC 2 cut(s) 127, 382
BstMBI GATC 3 cut(s) 186, 250, 415
BstMCI CGRYCG 2 cut(s) 189, 253
BstNI CCWGG 1 cut(s) 533
BstNSI RCATGY 2 cut(s) 110, 404
BstSCI CCNGG 1 cut(s) 531
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 5 cut(s) 86, 184, 332, 366, 396
BtsCI GGATG 2 cut(s) 55, 93
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 364, 374
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 2 cut(s) 362, 372
Cfr13I GGNCC 2 cut(s) 182, 395
CseI GACGC 1 cut(s) 458
CsiI ACCWGGT 1 cut(s) 531
Csp6I GTAC 4 cut(s) 101, 161, 353, 404
CviAII CATG 5 cut(s) 43, 107, 315, 401, 556
CviJI RGCY 9 cut(s) 86, 130, 184, 305, 322, 332, 366, 396, 542
CviKI_1 RGCY 9 cut(s) 86, 130, 184, 305, 322, 332, 366, 396, 542
CviQI GTAC 4 cut(s) 101, 161, 353, 404
DpnI GATC 3 cut(s) 188, 252, 417
DpnII GATC 3 cut(s) 186, 250, 415
EaeI YGGCCR 2 cut(s) 330, 364
Eco57I CTGAAG 3 cut(s) 162, 284, 368
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 531
FaeI CATG 5 cut(s) 46, 110, 318, 404, 559
FaiI YATR 8 cut(s) 44, 108, 203, 316, 329, 402, 462, 557
FatI CATG 5 cut(s) 42, 106, 314, 400, 555
Fnu4HI GCNGC 2 cut(s) 540, 553
FokI GGATG 2 cut(s) 62, 80
Fsp4HI GCNGC 2 cut(s) 540, 553
GlaI GCGC 1 cut(s) 453
GluI GCNGC 2 cut(s) 540, 553
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 5 cut(s) 86, 184, 332, 366, 396
HapII CCGG 2 cut(s) 363, 373
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 5 cut(s) 46, 110, 318, 404, 559
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 3 cut(s) 135, 233, 390
HpaII CCGG 2 cut(s) 363, 373
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 3 cut(s) 139, 385, 440
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 194, 197
HpyAV CCTTC 4 cut(s) 31, 76, 343, 532
HpyCH4IV ACGT 2 cut(s) 12, 436
HpySE526I ACGT 2 cut(s) 12, 436
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 5 cut(s) 46, 110, 318, 404, 559
HspAI GCGC 1 cut(s) 452
KroI GCCGGC 2 cut(s) 362, 372
KroNI GCCGGC 2 cut(s) 364, 374
Kzo9I GATC 3 cut(s) 186, 250, 415
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 40
MabI ACCWGGT 1 cut(s) 531
MaeII ACGT 2 cut(s) 12, 436
MaeIII GTNAC 1 cut(s) 482
MalI GATC 3 cut(s) 188, 252, 417
MboI GATC 3 cut(s) 186, 250, 415
MboII GAAGA 2 cut(s) 168, 233
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 415
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 5 cut(s) 36, 89, 267, 469, 526
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 2 cut(s) 129, 384
MmeI TCCRAC 2 cut(s) 332, 443
MnlI CCTC 2 cut(s) 37, 354
Mox20I TGGCCA 1 cut(s) 332
MroNI GCCGGC 2 cut(s) 362, 372
MscI TGGCCA 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 332
MspI CCGG 2 cut(s) 363, 373
MspR9I CCNGG 1 cut(s) 533
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 1 cut(s) 452
NaeI GCCGGC 2 cut(s) 364, 374
NdeII GATC 3 cut(s) 186, 250, 415
NgoMIV GCCGGC 2 cut(s) 362, 372
NlaIII CATG 5 cut(s) 46, 110, 318, 404, 559
NlaIV GGNNCC 2 cut(s) 306, 361
NmeAIII GCCGAG 2 cut(s) 156, 372
NspI RCATGY 2 cut(s) 110, 404
NspV TTCGAA 1 cut(s) 219
PaqCI CACCTGC 1 cut(s) 367
PciI ACATGT 2 cut(s) 106, 400
PdiI GCCGGC 2 cut(s) 364, 374
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 541, 554
Ple19I CGATCG 2 cut(s) 189, 253
PleI GAGTC 2 cut(s) 129, 384
PpsI GAGTC 2 cut(s) 129, 384
PscI ACATGT 2 cut(s) 106, 400
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 306, 361
PspPI GGNCC 2 cut(s) 182, 395
PsuI RGATCY 1 cut(s) 415
PvuI CGATCG 2 cut(s) 189, 253
RgaI GCGATCGC 1 cut(s) 253
RsaI GTAC 4 cut(s) 102, 162, 354, 405
RsaNI GTAC 4 cut(s) 101, 161, 353, 404
SatI GCNGC 2 cut(s) 540, 553
Sau3AI GATC 3 cut(s) 186, 250, 415
Sau96I GGNCC 2 cut(s) 182, 395
SchI GAGTC 2 cut(s) 129, 384
ScrFI CCNGG 1 cut(s) 533
SexAI ACCWGGT 1 cut(s) 531
SfaAI GCGATCGC 1 cut(s) 253
SfaNI GCATC 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 219
SgfI GCGATCGC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 5 cut(s) 36, 89, 267, 469, 526
StyD4I CCNGG 1 cut(s) 531
TaiI ACGT 2 cut(s) 15, 439
TaqI TCGA 5 cut(s) 29, 195, 219, 384, 497
TasI AATT 5 cut(s) 36, 89, 267, 469, 526
TatI WGTACW 2 cut(s) 100, 403
TfiI GAWTC 1 cut(s) 233
TseI GCWGC 2 cut(s) 539, 552
TspDTI ATGAA 5 cut(s) 82, 246, 303, 480, 492
TspGWI ACGGA 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 89
XceI RCATGY 2 cut(s) 110, 404
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.