Rmu_sc0006504.1_g000008

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006504.1
Physical Location & Seq
Forward (+)
24291 .. 24860
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006504.1_g000008.1.cds

Sequence Viewer

Length: 570 bp
atggcaagaaattgcaatgaggaaccacataaagtttcgttggaaactaatgtagtagcttcaaagaacaaaatcaactcctctactccagtccttcgttatgtgcgaaaatctaggcgaaaagaaggggaatctcattttgtggaggcaaatgagaaagaacgtccgcgaaaattagatgagaaggacgtagaattactaaaagaaacatcaaccatactgttgatgaagttgagcaacgccacacccaccaagcagctgataaaggggtttgtcaaaccgattcaagacgagacagagcataggacgcttcctgacaaaaggacaaaggatggattcgaccctaacgcttataagctgctagcaatggccggatatgacttcggttcgtcgaacaaagaaggtgaccaagtcatccctggtaaaaaggtgcatgaacttaatgaatctcaaaggaggttgacagagcaaggatgcacagctgaccctgctaaagcaagtcttggttttgtagtaggcaaaccaatcaaaatttcaagaacaagaaaagttacgaaggcaagcacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.25

Weight (kDa)

9.65

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 531
AgsI TTSAA 3 cut(s) 63, 287, 537
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 4 cut(s) 59, 259, 358, 482
AluI AGCT 4 cut(s) 59, 259, 358, 482
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 256, 358
ApoI RAATTY 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 268, 345
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 114, 362
BisI GCNGC 2 cut(s) 257, 359
BlsI GCNGC 2 cut(s) 258, 360
Bme1390I CCNGG 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 464
BmtI GCTAGC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 2 cut(s) 22, 372
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 3 cut(s) 337, 414, 479
BseMI GCAATG 2 cut(s) 22, 372
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 268, 345
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 371
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 371
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 24
BspOI GCTAGC 1 cut(s) 365
BsrDI GCAATG 2 cut(s) 22, 372
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 363, 562
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 3 cut(s) 337, 414, 479
BstFNI CGCG 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 307, 488
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 418
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 268, 345
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 3 cut(s) 337, 414, 479
Cac8I GCNNGC 2 cut(s) 363, 562
CseI GACGC 1 cut(s) 316
CviAII CATG 1 cut(s) 434
CviJI RGCY 5 cut(s) 59, 259, 358, 371, 482
CviKI_1 RGCY 5 cut(s) 59, 259, 358, 371, 482
EaeI YGGCCR 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 418
FaeI CATG 1 cut(s) 437
FaiI YATR 7 cut(s) 30, 102, 218, 303, 354, 378, 435
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 257, 359
FokI GGATG 3 cut(s) 344, 401, 486
Fsp4HI GCNGC 2 cut(s) 257, 359
FspBI CTAG 2 cut(s) 114, 362
GluI GCNGC 2 cut(s) 257, 359
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 372
HgaI GACGC 1 cut(s) 316
Hin1II CATG 1 cut(s) 437
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 4 cut(s) 131, 283, 336, 446
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 462
Hpy188III TCNNGA 3 cut(s) 287, 314, 537
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 5 cut(s) 104, 119, 178, 395, 550
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 3 cut(s) 163, 189, 566
HpyCH4V TGCA 3 cut(s) 15, 433, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 488
HpySE526I ACGT 3 cut(s) 163, 189, 566
Hsp92II CATG 1 cut(s) 437
LpnPI CCDG 6 cut(s) 102, 327, 385, 405, 432, 501
Lsp1109I GCAGC 2 cut(s) 268, 345
LweI GCATC 1 cut(s) 464
MaeI CTAG 2 cut(s) 114, 362
MaeII ACGT 3 cut(s) 163, 189, 566
MaeIII GTNAC 2 cut(s) 404, 550
MluCI AATT 4 cut(s) 10, 173, 194, 531
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 4 cut(s) 13, 91, 139, 450
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 2 cut(s) 259, 482
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 307, 488
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 4 cut(s) 131, 283, 336, 446
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 258, 360
Ppu21I YACGTR 1 cut(s) 567
PsiI TTATAA 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 410
PvuII CAGCTG 2 cut(s) 259, 482
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 2 cut(s) 257, 359
ScrFI CCNGG 1 cut(s) 420
SfaNI GCATC 1 cut(s) 464
Sse9I AATT 4 cut(s) 10, 173, 194, 531
SsiI CCGC 1 cut(s) 167
SspMI CTAG 2 cut(s) 114, 362
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 3 cut(s) 166, 192, 569
TaqI TCGA 2 cut(s) 339, 392
TasI AATT 4 cut(s) 10, 173, 194, 531
TfiI GAWTC 4 cut(s) 131, 283, 336, 446
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 256, 358
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 242, 450, 459
Tth111I GACNNNGTC 1 cut(s) 410
XapI RAATTY 1 cut(s) 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XspI CTAG 2 cut(s) 114, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.