pycom15g34920

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000128
Physical Location & Seq
Reverse (-)
34776340 .. 34777006
667 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34920.1

Sequence Viewer

Length: 627 bp
ATGGAGCAGGAGCCACGCATTCCCGTTTCCTTGCGTGAGTACTTCCCGAATGACTTTTTCCAACAGTGCACTACCGTGGCCTGTCACATGGTTGAAGTAGAAATAGAAGAGCCCTCAAAAGGCAAAGCTATCGCCACTGAGGTAGAAAAGACCCTTACACCTGGAGAAGGTCTGCCAACACACTTTAGCATCGAGGAAGCGCTACCATTGCCAAAAAAGATGCGAAGAGCACTAGCAGCAGTCTTGGCAGGTCCCGACGACCACGAAGTGCAAGAAAGTAACGACGAAGGCTCGAAGCTTCAGCCACATGAATGTGCCACATGTTGTGCCACCCATGACGTAATTAACTTCACTGACGAAGACCTACTGTTGGGATCAAAGCCTCACAACCGTCCTCTCTTCGTCTCCGGGTACATAAGGGAATACAAAGTCAACCGCATGCTTGTGGATGGTGGGTCGGCCATAAACATCATGCCAAAATCAACAATGACCATAATTGACATCAAGGTGAATGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATGGGCATGATCCGAGTAGAGATGACCATGGGTGAGCTCAAATCAACTTGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

209

Amino Acids

23.11

Weight (kDa)

5.19

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 239
AciI CCGC 1 cut(s) 436
AclWI GGATC 3 cut(s) 382, 532, 574
AcoI YGGCCR 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 2 cut(s) 41, 413
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 119, 167, 370
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 2 cut(s) 160, 540
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 3 cut(s) 128, 298, 607
AluI AGCT 3 cut(s) 128, 298, 607
Alw21I GWGCWC 3 cut(s) 71, 232, 609
Alw26I GTCTC 1 cut(s) 409
Alw44I GTGCAC 1 cut(s) 67
AlwI GGATC 3 cut(s) 382, 532, 574
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 2 cut(s) 78, 459
ApaLI GTGCAC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 520, 614
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 114, 609
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 3 cut(s) 71, 232, 609
BbvI GCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 443, 565
BceAI ACGGC 1 cut(s) 513
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 162, 542
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 162, 409, 542
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 12, 253
BmrFI CCNGG 3 cut(s) 162, 409, 542
BmsI GCATC 2 cut(s) 198, 210
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 409
BsaJI CCNNGG 4 cut(s) 75, 541, 553, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 167, 370
Bse3DI GCAATG 1 cut(s) 206
BseBI CCWGG 2 cut(s) 162, 542
BseDI CCNNGG 4 cut(s) 75, 541, 553, 597
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 3 cut(s) 119, 167, 370
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 129, 515
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 1 cut(s) 248
BshFI GGCC 2 cut(s) 80, 461
BsiHKAI GWGCWC 3 cut(s) 71, 232, 609
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 119, 167, 370
BsmAI GTCTC 1 cut(s) 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 2 cut(s) 80, 461
Bsp1286I GDGCHC 4 cut(s) 71, 114, 232, 609
Bsp143I GATC 3 cut(s) 374, 537, 579
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 1 cut(s) 436
BspANI GGCC 2 cut(s) 80, 461
BspCNI CTCAG 2 cut(s) 130, 516
BspLI GGNNCC 2 cut(s) 12, 253
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 3 cut(s) 382, 532, 574
BspQI GCTCTTC 2 cut(s) 102, 220
BsrDI GCAATG 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 75, 541, 553, 597
BssMI GATC 3 cut(s) 374, 537, 579
BssT1I CCWWGG 2 cut(s) 553, 597
Bst2UI CCWGG 2 cut(s) 162, 542
Bst4CI ACNGT 4 cut(s) 66, 76, 369, 392
Bst6I CTCTTC 3 cut(s) 102, 220, 404
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 138, 524, 624
BstDSI CCRYGG 2 cut(s) 75, 597
BstENI CCTNNNNNAGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 3 cut(s) 377, 540, 582
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 374, 537, 579
BstMWI GCNNNNNNNGC 3 cut(s) 208, 236, 245
BstNI CCWGG 2 cut(s) 162, 542
BstNSI RCATGY 2 cut(s) 324, 442
BstSCI CCNGG 3 cut(s) 160, 407, 540
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 2 cut(s) 80, 461
BtgI CCRYGG 2 cut(s) 75, 597
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 3 cut(s) 71, 135, 351
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 440
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 40, 412
CviAII CATG 8 cut(s) 88, 308, 321, 335, 439, 472, 577, 598
CviQI GTAC 2 cut(s) 40, 412
DdeI CTNAG 3 cut(s) 138, 524, 624
DpnI GATC 3 cut(s) 376, 539, 581
DpnII GATC 3 cut(s) 374, 537, 579
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 3 cut(s) 102, 220, 404
EarI CTCTTC 3 cut(s) 102, 220, 404
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 2 cut(s) 553, 597
Eco24I GRGCYC 2 cut(s) 114, 609
Eco47I GGWCC 1 cut(s) 251
Eco47III AGCGCT 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 160, 540
EcoT14I CCWWGG 2 cut(s) 553, 597
EcoT38I GRGCYC 2 cut(s) 114, 609
ErhI CCWWGG 2 cut(s) 553, 597
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 8 cut(s) 91, 311, 324, 338, 442, 475, 580, 601
FaqI GGGAC 1 cut(s) 237
FatI CATG 8 cut(s) 87, 307, 320, 334, 438, 471, 576, 597
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 2 cut(s) 114, 609
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 80, 461
HapII CCGG 1 cut(s) 408
HhaI GCGC 1 cut(s) 202
Hin1II CATG 8 cut(s) 91, 311, 324, 338, 442, 475, 580, 601
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 296
HpaII CCGG 1 cut(s) 408
HphI GGTGA 2 cut(s) 520, 614
Hpy166II GTNNAC 2 cut(s) 69, 433
Hpy188I TCNGA 1 cut(s) 584
Hpy188III TCNNGA 2 cut(s) 46, 254
Hpy8I GTNNAC 2 cut(s) 69, 433
Hpy99I CGWCG 2 cut(s) 260, 287
HpyAV CCTTC 2 cut(s) 161, 281
HpyCH4III ACNGT 4 cut(s) 66, 76, 369, 392
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 69, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 236, 245
HpyF3I CTNAG 3 cut(s) 138, 524, 624
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 8 cut(s) 91, 311, 324, 338, 442, 475, 580, 601
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 3 cut(s) 374, 537, 579
LguI GCTCTTC 2 cut(s) 102, 220
LmnI GCTCC 2 cut(s) 4, 10
LpnPI CCDG 8 cut(s) 94, 147, 174, 234, 421, 527, 536, 554
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 2 cut(s) 198, 210
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 83, 278
MalI GATC 3 cut(s) 376, 539, 581
MboI GATC 3 cut(s) 374, 537, 579
MboII GAAGA 4 cut(s) 119, 237, 371, 391
MhlI GDGCHC 4 cut(s) 71, 114, 232, 609
MluCI AATT 2 cut(s) 342, 495
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 124, 133, 187, 393, 405, 551
MseI TTAA 2 cut(s) 345, 549
MslI CAYNNNNRTG 5 cut(s) 74, 310, 312, 443, 506
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 3 cut(s) 162, 409, 542
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 162, 542
MwoI GCNNNNNNNGC 3 cut(s) 208, 236, 245
NciI CCSGG 1 cut(s) 409
NcoI CCATGG 1 cut(s) 597
NdeII GATC 3 cut(s) 374, 537, 579
NlaIII CATG 8 cut(s) 91, 311, 324, 338, 442, 475, 580, 601
NlaIV GGNNCC 2 cut(s) 12, 253
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 2 cut(s) 324, 442
OliI CACNNNNGTG 1 cut(s) 74
PaeI GCATGC 1 cut(s) 442
PciI ACATGT 1 cut(s) 320
PciSI GCTCTTC 2 cut(s) 102, 220
PctI GAATGC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 251
PscI ACATGT 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 160, 540
PspGI CCWGG 2 cut(s) 160, 540
PspN4I GGNNCC 2 cut(s) 12, 253
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
RsaI GTAC 2 cut(s) 41, 413
RsaNI GTAC 2 cut(s) 40, 412
RseI CAYNNNNRTG 5 cut(s) 74, 310, 312, 443, 506
SacI GAGCTC 1 cut(s) 609
SapI GCTCTTC 2 cut(s) 102, 220
SaqAI TTAA 2 cut(s) 345, 549
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 3 cut(s) 374, 537, 579
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 162, 409, 542
SduI GDGCHC 4 cut(s) 71, 114, 232, 609
SfaNI GCATC 2 cut(s) 198, 210
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 5 cut(s) 74, 310, 312, 443, 506
SphI GCATGC 1 cut(s) 442
Sse9I AATT 2 cut(s) 342, 495
SsiI CCGC 1 cut(s) 436
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 160, 407, 540
StyI CCWWGG 2 cut(s) 553, 597
TaaI ACNGT 4 cut(s) 66, 76, 369, 392
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 192, 293
TasI AATT 2 cut(s) 342, 495
TatI WGTACW 1 cut(s) 39
Tru1I TTAA 2 cut(s) 345, 549
Tru9I TTAA 2 cut(s) 345, 549
TscAI CASTG 3 cut(s) 71, 142, 358
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 324, 528
TspRI CASTG 3 cut(s) 71, 142, 358
VneI GTGCAC 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 165
XceI RCATGY 2 cut(s) 324, 442
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.