Rmu_sc0023934.1_g000003

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023934.1
OG0000128
Physical Location & Seq
Reverse (-)
1341 .. 2372
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023934.1_g000003.1.cds

Sequence Viewer

Length: 1032 bp
atggatgatgaaataataaaggaagttctcccagttggagtaccctctacagggaagactgcagaagtgcgtaataaggaagtagaatccagcatggcaagaaatcacaatgaggaaccacagaaagtttcgttggaaaataatgtggcagcttcaaagaacaaaatcaactcctctgctccagtccttcgttatgtgccaaagtctaggcaaaaagaaggggaatctccttttgtggaggcaaatgaacaagaacgtccgcgaaagttagatgagaaggacgtaaaattactaaaagaaacatcaaccataccgttaacaaagttgagcaacgcaactccaaccaagcagctgctaaaggggtttgtcaaaccaattcaaggcaagacagagcatgggacacttcttgacaaaaggataaaggaaggattcgactctaacccttacaagctgctagcaaaggctggatatgactttggttcattaagcaaggaatgtggccaagtcatcccttgtaaaaaggtgcatgagcttaatgaatctcaaaggaggttgagagagcaaggatgcatagctaaccctgctaaagcaggtcttggttttgtgccaggcaaaccaattaaaatttcaggaagaagaaaagttgcgaaggcaaacacgcaacacattagtgttgaagtaatagaagaagaggcacaagaatctaaatctgcctcttgcgtttcggcatttgatcgcattcatcctaattctcaagctgcggtgcctgaacgagttgatgagttggcgcctcgagtttctgtatttgatcgtgttgacacatcaacaagccgaatctcagttttcaatcgcatcacccaaacgaccactcgagcttccgtgttcaataggttgtcatctttcgatgaaggaaataagaaatctgagtcagcccctcgaaattcggcacttgagaggatacaagcacccaaagaccaacaaaggcaaaagagaaagaggatcaatgaccaaggaaacgacaaagaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

343

Amino Acids

38.19

Weight (kDa)

9.53

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 581
AccB1I GGYRCC 2 cut(s) 763, 787
AccII CGCG 1 cut(s) 262
AciI CCGC 2 cut(s) 260, 761
AclWI GGATC 1 cut(s) 1007
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 2 cut(s) 624, 940
AcyI GRCGYC 1 cut(s) 788
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 50, 51, 380
AgsI TTSAA 5 cut(s) 156, 380, 677, 847, 886
AjnI CCWGG 1 cut(s) 607
AjuI GAANNNNNNNTTGG 4 cut(s) 116, 148, 610, 642
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 7 cut(s) 152, 352, 451, 532, 575, 758, 875
AluI AGCT 7 cut(s) 152, 352, 451, 532, 575, 758, 875
AlwI GGATC 1 cut(s) 1007
Ama87I CYCGRG 2 cut(s) 792, 870
AoxI GGCC 1 cut(s) 499
ApeKI GCWGC 5 cut(s) 149, 349, 352, 451, 758
ApoI RAATTY 2 cut(s) 624, 940
AspLEI GCGC 1 cut(s) 790
AsuHPI GGTGA 1 cut(s) 847
AsuNHI GCTAGC 1 cut(s) 454
AvaI CYCGRG 2 cut(s) 792, 870
BalI TGGCCA 1 cut(s) 501
BanI GGYRCC 2 cut(s) 763, 787
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 5 cut(s) 161, 339, 361, 438, 745
BciT130I CCWGG 1 cut(s) 609
BciVI GTATCC 1 cut(s) 951
BfaI CTAG 2 cut(s) 207, 455
BfmI CTRYAG 2 cut(s) 48, 60
BfoI RGCGCY 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 581
BfuI GTATCC 1 cut(s) 951
BisI GCNGC 5 cut(s) 150, 350, 353, 452, 759
BlsI GCNGC 5 cut(s) 151, 351, 354, 453, 760
Bme1390I CCNGG 1 cut(s) 609
BmeT110I CYCGRG 2 cut(s) 792, 870
BmiI GGNNCC 3 cut(s) 117, 765, 789
BmrFI CCNGG 1 cut(s) 609
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 557, 861
BmtI GCTAGC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 738, 971
BsaHI GRCGYC 1 cut(s) 788
BsaJI CCNNGG 1 cut(s) 1009
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 51, 380
Bse1I ACTGG 2 cut(s) 32, 182
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 1009
BseGI GGATG 4 cut(s) 10, 507, 572, 742
BseLI CCNNNNNNNGG 3 cut(s) 50, 51, 380
BseMII CTCAG 2 cut(s) 852, 915
BseNI ACTGG 2 cut(s) 32, 182
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 5 cut(s) 161, 339, 361, 438, 745
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 501
BshNI GGYRCC 2 cut(s) 763, 787
BsiHKCI CYCGRG 2 cut(s) 792, 870
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 50, 51, 380
BsmFI GGGAC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 1 cut(s) 501
BsoBI CYCGRG 2 cut(s) 792, 870
Bsp143I GATC 3 cut(s) 733, 808, 999
BspACI CCGC 2 cut(s) 260, 761
BspANI GGCC 1 cut(s) 501
BspCNI CTCAG 2 cut(s) 851, 916
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 117, 765, 789
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 581
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 1007
BspT107I GGYRCC 2 cut(s) 763, 787
BsrI ACTGG 2 cut(s) 32, 182
BssECI CCNNGG 1 cut(s) 1009
BssMI GATC 3 cut(s) 733, 808, 999
BssNI GRCGYC 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 1009
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 788
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 838, 924
BstF5I GGATG 4 cut(s) 10, 507, 572, 742
BstFNI CGCG 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 3 cut(s) 736, 811, 1002
BstMBI GATC 3 cut(s) 733, 808, 999
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 609
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 2 cut(s) 48, 60
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 5 cut(s) 161, 339, 361, 438, 745
BstV2I GAAGAC 1 cut(s) 62
BsuI GTATCC 1 cut(s) 951
BsuRI GGCC 1 cut(s) 501
BtsCI GGATG 4 cut(s) 10, 507, 572, 742
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 1 cut(s) 456
CfoI GCGC 1 cut(s) 790
Csp6I GTAC 1 cut(s) 41
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 3 cut(s) 94, 395, 527
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 838, 924
DinI GGCGCC 1 cut(s) 789
DpnI GATC 3 cut(s) 735, 810, 1001
DpnII GATC 3 cut(s) 733, 808, 999
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 1009
Eco88I CYCGRG 2 cut(s) 792, 870
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 1009
EcoT22I ATGCAT 1 cut(s) 572
EgeI GGCGCC 1 cut(s) 789
EheI GGCGCC 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 3 cut(s) 97, 398, 530
FaiI YATR 7 cut(s) 95, 195, 311, 396, 471, 528, 572
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 412
FatI CATG 3 cut(s) 93, 394, 526
Fnu4HI GCNGC 5 cut(s) 150, 350, 353, 452, 759
FokI GGATG 4 cut(s) 17, 494, 579, 729
Fsp4HI GCNGC 5 cut(s) 150, 350, 353, 452, 759
FspBI CTAG 2 cut(s) 207, 455
GlaI GCGC 1 cut(s) 789
GluI GCNGC 5 cut(s) 150, 350, 353, 452, 759
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 1 cut(s) 501
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 1 cut(s) 788
Hin1II CATG 3 cut(s) 97, 398, 530
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 2 cut(s) 318, 817
HindII GTYRAC 2 cut(s) 318, 817
HinfI GANTC 8 cut(s) 86, 224, 429, 434, 539, 701, 834, 926
HpaI GTTAAC 1 cut(s) 318
HphI GGTGA 1 cut(s) 847
Hpy166II GTNNAC 2 cut(s) 318, 817
Hpy188I TCNGA 2 cut(s) 925, 1031
Hpy188III TCNNGA 2 cut(s) 407, 630
Hpy8I GTNNAC 2 cut(s) 318, 817
HpyAV CCTTC 6 cut(s) 197, 212, 271, 419, 643, 902
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4IV ACGT 2 cut(s) 256, 282
HpyCH4V TGCA 3 cut(s) 62, 526, 570
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 2 cut(s) 838, 924
HpySE526I ACGT 2 cut(s) 256, 282
Hsp92I GRCGYC 1 cut(s) 788
Hsp92II CATG 3 cut(s) 97, 398, 530
HspAI GCGC 1 cut(s) 788
KasI GGCGCC 1 cut(s) 787
KspAI GTTAAC 1 cut(s) 318
Kzo9I GATC 3 cut(s) 733, 808, 999
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 5 cut(s) 161, 339, 361, 438, 745
LweI GCATC 2 cut(s) 557, 861
MaeI CTAG 2 cut(s) 207, 455
MaeII ACGT 2 cut(s) 256, 282
MalI GATC 3 cut(s) 735, 810, 1001
MboI GATC 3 cut(s) 733, 808, 999
MboII GAAGA 5 cut(s) 67, 645, 648, 698, 701
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 6 cut(s) 287, 375, 618, 624, 748, 940
MluNI TGGCCA 1 cut(s) 501
Mly113I GGCGCC 1 cut(s) 788
MlyI GAGTC 2 cut(s) 428, 935
MmeI TCCRAC 3 cut(s) 16, 114, 365
Mox20I TGGCCA 1 cut(s) 501
Mph1103I ATGCAT 1 cut(s) 572
MscI TGGCCA 1 cut(s) 501
MseI TTAA 4 cut(s) 317, 485, 534, 621
MslI CAYNNNNRTG 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 738
MvaI CCWGG 1 cut(s) 609
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 581
NarI GGCGCC 1 cut(s) 788
NdeII GATC 3 cut(s) 733, 808, 999
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 3 cut(s) 97, 398, 530
NlaIV GGNNCC 3 cut(s) 117, 765, 789
NsiI ATGCAT 1 cut(s) 572
OliI CACNNNNGTG 1 cut(s) 669
PaeR7I CTCGAG 2 cut(s) 792, 870
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 6 cut(s) 86, 224, 429, 539, 701, 834
PkrI GCNGC 5 cut(s) 151, 351, 354, 453, 760
PleI GAGTC 2 cut(s) 428, 934
PluTI GGCGCC 1 cut(s) 791
PpsI GAGTC 2 cut(s) 428, 934
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 3 cut(s) 117, 765, 789
PspXI VCTCGAGB 2 cut(s) 792, 870
PstI CTGCAG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 4 cut(s) 317, 485, 534, 621
SatI GCNGC 5 cut(s) 150, 350, 353, 452, 759
Sau3AI GATC 3 cut(s) 733, 808, 999
SchI GAGTC 2 cut(s) 428, 935
ScrFI CCNGG 1 cut(s) 609
SfaNI GCATC 2 cut(s) 557, 861
SfcI CTRYAG 2 cut(s) 48, 60
SfoI GGCGCC 1 cut(s) 789
Sfr274I CTCGAG 2 cut(s) 792, 870
SlaI CTCGAG 2 cut(s) 792, 870
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 4 cut(s) 753, 792, 870, 950
SmoI CTYRAG 4 cut(s) 753, 792, 870, 950
Sse9I AATT 6 cut(s) 287, 375, 618, 624, 748, 940
SsiI CCGC 2 cut(s) 260, 761
SspDI GGCGCC 1 cut(s) 787
SspMI CTAG 2 cut(s) 207, 455
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 1 cut(s) 315
TaiI ACGT 2 cut(s) 259, 285
TaqI TCGA 5 cut(s) 432, 793, 871, 903, 937
TasI AATT 6 cut(s) 287, 375, 618, 624, 748, 940
TfiI GAWTC 6 cut(s) 86, 224, 429, 539, 701, 834
Tru1I TTAA 4 cut(s) 317, 485, 534, 621
Tru9I TTAA 4 cut(s) 317, 485, 534, 621
TseI GCWGC 5 cut(s) 149, 349, 352, 451, 758
TspDTI ATGAA 6 cut(s) 24, 261, 471, 552, 731, 921
TspGWI ACGGA 1 cut(s) 868
XapI RAATTY 2 cut(s) 624, 940
XhoI CTCGAG 2 cut(s) 792, 870
XspI CTAG 2 cut(s) 207, 455
Zsp2I ATGCAT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.