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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 94 |
| AccI | GTMKAC | 1 cut(s) | 292 |
| AccII | CGCG | 2 cut(s) | 84, 837 |
| AciI | CCGC | 3 cut(s) | 82, 457, 617 |
| AclWI | GGATC | 1 cut(s) | 536 |
| AcoI | YGGCCR | 1 cut(s) | 407 |
| AcsI | RAATTY | 1 cut(s) | 449 |
| AfaI | GTAC | 1 cut(s) | 427 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 94, 117 |
| AgsI | TTSAA | 7 cut(s) | 11, 44, 260, 304, 665, 768, 862 |
| AjiI | CACGTC | 1 cut(s) | 346 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 842, 874 |
| AluBI | AGCT | 5 cut(s) | 269, 310, 538, 753, 772 |
| AluI | AGCT | 5 cut(s) | 269, 310, 538, 753, 772 |
| Alw26I | GTCTC | 1 cut(s) | 717 |
| AlwI | GGATC | 1 cut(s) | 536 |
| AoxI | GGCC | 2 cut(s) | 164, 407 |
| ApaI | GGGCCC | 1 cut(s) | 168 |
| ApeKI | GCWGC | 2 cut(s) | 182, 750 |
| ApoI | RAATTY | 1 cut(s) | 449 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 270 |
| AspLEI | GCGC | 2 cut(s) | 86, 837 |
| AspS9I | GGNCC | 2 cut(s) | 164, 165 |
| AsuHPI | GGTGA | 6 cut(s) | 70, 100, 394, 568, 600, 719 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BanII | GRGCYC | 1 cut(s) | 168 |
| BauI | CACGAG | 1 cut(s) | 243 |
| BbsI | GAAGAC | 1 cut(s) | 326 |
| BbvI | GCAGC | 2 cut(s) | 169, 762 |
| BccI | CCATC | 3 cut(s) | 584, 663, 833 |
| BceAI | ACGGC | 1 cut(s) | 422 |
| BclI | TGATCA | 2 cut(s) | 277, 384 |
| BcoDI | GTCTC | 1 cut(s) | 717 |
| BfaI | CTAG | 1 cut(s) | 539 |
| BglII | AGATCT | 2 cut(s) | 499, 541 |
| BisI | GCNGC | 2 cut(s) | 183, 751 |
| BlsI | GCNGC | 2 cut(s) | 184, 752 |
| BmgBI | CACGTC | 1 cut(s) | 346 |
| BmgT120I | GGNCC | 2 cut(s) | 164, 165 |
| BmiI | GGNNCC | 2 cut(s) | 165, 166 |
| BmsI | GCATC | 2 cut(s) | 57, 114 |
| BoxI | GACNNNNGTC | 1 cut(s) | 677 |
| BpiI | GAAGAC | 1 cut(s) | 326 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| BsaAI | YACGTR | 1 cut(s) | 290 |
| BsaI | GGTCTC | 1 cut(s) | 717 |
| BsaJI | CCNNGG | 3 cut(s) | 168, 198, 437 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 94, 117 |
| Bse1I | ACTGG | 1 cut(s) | 227 |
| Bse3DI | GCAATG | 1 cut(s) | 213 |
| BseDI | CCNNGG | 3 cut(s) | 168, 198, 437 |
| BseGI | GGATG | 4 cut(s) | 36, 469, 674, 796 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 94, 117 |
| BseMI | GCAATG | 1 cut(s) | 213 |
| BseMII | CTCAG | 3 cut(s) | 387, 533, 882 |
| BseNI | ACTGG | 1 cut(s) | 227 |
| BseRI | GAGGAG | 3 cut(s) | 83, 329, 705 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| BseX3I | CGGCCG | 1 cut(s) | 407 |
| BseXI | GCAGC | 2 cut(s) | 169, 762 |
| BseYI | CCCAGC | 1 cut(s) | 619 |
| Bsh1236I | CGCG | 2 cut(s) | 84, 837 |
| Bsh1285I | CGRYCG | 1 cut(s) | 410 |
| BshFI | GGCC | 2 cut(s) | 166, 409 |
| BsiEI | CGRYCG | 1 cut(s) | 410 |
| BsiSI | CCGG | 1 cut(s) | 410 |
| BslFI | GGGAC | 1 cut(s) | 39 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 94, 117 |
| BsmAI | GTCTC | 1 cut(s) | 717 |
| BsmFI | GGGAC | 1 cut(s) | 39 |
| BsmI | GAATGC | 1 cut(s) | 908 |
| BsnI | GGCC | 2 cut(s) | 166, 409 |
| Bso31I | GGTCTC | 1 cut(s) | 717 |
| Bsp120I | GGGCCC | 1 cut(s) | 164 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp143I | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| BspACI | CCGC | 3 cut(s) | 82, 457, 617 |
| BspANI | GGCC | 2 cut(s) | 166, 409 |
| BspCNI | CTCAG | 3 cut(s) | 388, 532, 881 |
| BspFNI | CGCG | 2 cut(s) | 84, 837 |
| BspHI | TCATGA | 1 cut(s) | 507 |
| BspLI | GGNNCC | 2 cut(s) | 165, 166 |
| BspPI | GGATC | 1 cut(s) | 536 |
| BspTNI | GGTCTC | 1 cut(s) | 717 |
| BsrDI | GCAATG | 1 cut(s) | 213 |
| BsrI | ACTGG | 1 cut(s) | 227 |
| BssECI | CCNNGG | 3 cut(s) | 168, 198, 437 |
| BssMI | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| BssSI | CACGAG | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 3 cut(s) | 168, 198, 437 |
| Bst2BI | CACGAG | 1 cut(s) | 243 |
| Bst4CI | ACNGT | 4 cut(s) | 214, 425, 434, 758 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 903 |
| BstBAI | YACGTR | 1 cut(s) | 290 |
| BstC8I | GCNNGC | 2 cut(s) | 17, 628 |
| BstDEI | CTNAG | 4 cut(s) | 396, 519, 868, 912 |
| BstF5I | GGATG | 4 cut(s) | 36, 469, 674, 796 |
| BstFNI | CGCG | 2 cut(s) | 84, 837 |
| BstHHI | GCGC | 2 cut(s) | 86, 837 |
| BstKTI | GATC | 7 cut(s) | 135, 280, 387, 502, 531, 544, 815 |
| BstMAI | GTCTC | 1 cut(s) | 717 |
| BstMBI | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| BstMCI | CGRYCG | 1 cut(s) | 410 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 12, 903 |
| BstNSI | RCATGY | 2 cut(s) | 19, 630 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 677 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstSNI | TACGTA | 1 cut(s) | 290 |
| BstUI | CGCG | 2 cut(s) | 84, 837 |
| BstV1I | GCAGC | 2 cut(s) | 169, 762 |
| BstV2I | GAAGAC | 1 cut(s) | 326 |
| BstX2I | RGATCY | 2 cut(s) | 499, 541 |
| BstYI | RGATCY | 2 cut(s) | 499, 541 |
| BstZI | CGGCCG | 1 cut(s) | 407 |
| BsuRI | GGCC | 2 cut(s) | 166, 409 |
| BtrI | CACGTC | 1 cut(s) | 346 |
| BtsCI | GGATG | 4 cut(s) | 36, 469, 674, 796 |
| BtsI | GCAGTG | 1 cut(s) | 26 |
| BtsIMutI | CAGTG | 1 cut(s) | 26 |
| Cac8I | GCNNGC | 2 cut(s) | 17, 628 |
| CciI | TCATGA | 1 cut(s) | 507 |
| CfoI | GCGC | 2 cut(s) | 86, 837 |
| Cfr13I | GGNCC | 2 cut(s) | 164, 165 |
| CseI | GACGC | 1 cut(s) | 303 |
| Csp6I | GTAC | 1 cut(s) | 426 |
| CviAII | CATG | 8 cut(s) | 16, 89, 116, 355, 508, 627, 640, 776 |
| CviQI | GTAC | 1 cut(s) | 426 |
| DdeI | CTNAG | 4 cut(s) | 396, 519, 868, 912 |
| DpnI | GATC | 7 cut(s) | 134, 279, 386, 501, 530, 543, 814 |
| DpnII | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| DraI | TTTAAA | 1 cut(s) | 594 |
| EaeI | YGGCCR | 1 cut(s) | 407 |
| EagI | CGGCCG | 1 cut(s) | 407 |
| EclXI | CGGCCG | 1 cut(s) | 407 |
| Eco105I | TACGTA | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 3 cut(s) | 168, 198, 437 |
| Eco24I | GRGCYC | 1 cut(s) | 168 |
| Eco31I | GGTCTC | 1 cut(s) | 717 |
| Eco52I | CGGCCG | 1 cut(s) | 407 |
| EcoO109I | RGGNCCY | 1 cut(s) | 164 |
| EcoT14I | CCWWGG | 3 cut(s) | 168, 198, 437 |
| EcoT38I | GRGCYC | 1 cut(s) | 168 |
| ErhI | CCWWGG | 3 cut(s) | 168, 198, 437 |
| FaeI | CATG | 8 cut(s) | 19, 92, 119, 358, 511, 630, 643, 779 |
| FaqI | GGGAC | 1 cut(s) | 39 |
| FatI | CATG | 8 cut(s) | 15, 88, 115, 354, 507, 626, 639, 775 |
| FauI | CCCGC | 1 cut(s) | 89 |
| FbaI | TGATCA | 2 cut(s) | 277, 384 |
| FblI | GTMKAC | 1 cut(s) | 292 |
| Fnu4HI | GCNGC | 2 cut(s) | 183, 751 |
| FokI | GGATG | 4 cut(s) | 23, 456, 681, 803 |
| FriOI | GRGCYC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 2 cut(s) | 183, 751 |
| FspBI | CTAG | 1 cut(s) | 539 |
| GlaI | GCGC | 2 cut(s) | 85, 836 |
| GluI | GCNGC | 2 cut(s) | 183, 751 |
| GsaI | CCCAGC | 1 cut(s) | 623 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeIII | GGCC | 2 cut(s) | 166, 409 |
| HapII | CCGG | 1 cut(s) | 410 |
| HgaI | GACGC | 1 cut(s) | 303 |
| HhaI | GCGC | 2 cut(s) | 86, 837 |
| Hin1II | CATG | 8 cut(s) | 19, 92, 119, 358, 511, 630, 643, 779 |
| Hin6I | GCGC | 2 cut(s) | 84, 835 |
| HinP1I | GCGC | 2 cut(s) | 84, 835 |
| HincII | GTYRAC | 2 cut(s) | 217, 761 |
| HindII | GTYRAC | 2 cut(s) | 217, 761 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 3 cut(s) | 256, 338, 877 |
| HpaII | CCGG | 1 cut(s) | 410 |
| HphI | GGTGA | 6 cut(s) | 70, 100, 394, 568, 600, 719 |
| Hpy166II | GTNNAC | 5 cut(s) | 217, 293, 404, 727, 761 |
| Hpy188I | TCNGA | 5 cut(s) | 343, 474, 522, 565, 736 |
| Hpy188III | TCNNGA | 4 cut(s) | 275, 281, 508, 874 |
| Hpy8I | GTNNAC | 5 cut(s) | 217, 293, 404, 727, 761 |
| Hpy99I | CGWCG | 1 cut(s) | 478 |
| HpyAV | CCTTC | 4 cut(s) | 50, 298, 659, 774 |
| HpyCH4III | ACNGT | 4 cut(s) | 214, 425, 434, 758 |
| HpyCH4IV | ACGT | 2 cut(s) | 289, 345 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 697, 897 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 12, 903 |
| HpyF3I | CTNAG | 4 cut(s) | 396, 519, 868, 912 |
| HpySE526I | ACGT | 2 cut(s) | 289, 345 |
| Hsp92II | CATG | 8 cut(s) | 19, 92, 119, 358, 511, 630, 643, 779 |
| HspAI | GCGC | 2 cut(s) | 84, 835 |
| Ksp22I | TGATCA | 2 cut(s) | 277, 384 |
| Kzo9I | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| LmnI | GCTCC | 2 cut(s) | 307, 635 |
| LpnPI | CCDG | 6 cut(s) | 240, 356, 408, 423, 570, 605 |
| Lsp1109I | GCAGC | 2 cut(s) | 169, 762 |
| LweI | GCATC | 2 cut(s) | 57, 114 |
| MaeI | CTAG | 1 cut(s) | 539 |
| MaeII | ACGT | 2 cut(s) | 289, 345 |
| MaeIII | GTNAC | 2 cut(s) | 76, 679 |
| MalI | GATC | 7 cut(s) | 134, 279, 386, 501, 530, 543, 814 |
| MboI | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| MboII | GAAGA | 6 cut(s) | 133, 331, 425, 597, 835, 850 |
| MflI | RGATCY | 2 cut(s) | 499, 541 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MluCI | AATT | 1 cut(s) | 449 |
| MlyI | GAGTC | 2 cut(s) | 332, 871 |
| MmeI | TCCRAC | 1 cut(s) | 497 |
| MnlI | CCTC | 6 cut(s) | 61, 239, 307, 621, 726, 781 |
| MroXI | GAANNNNTTC | 1 cut(s) | 270 |
| MseI | TTAA | 4 cut(s) | 101, 494, 546, 593 |
| MslI | CAYNNNNRTG | 2 cut(s) | 780, 830 |
| MspA1I | CMGCKG | 1 cut(s) | 619 |
| MspI | CCGG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 908 |
| MvnI | CGCG | 2 cut(s) | 84, 837 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 12, 903 |
| NdeII | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| NlaIII | CATG | 8 cut(s) | 19, 92, 119, 358, 511, 630, 643, 779 |
| NlaIV | GGNNCC | 2 cut(s) | 165, 166 |
| NmuCI | GTSAC | 2 cut(s) | 76, 679 |
| NspI | RCATGY | 2 cut(s) | 19, 630 |
| PaeI | GCATGC | 2 cut(s) | 19, 630 |
| PagI | TCATGA | 1 cut(s) | 507 |
| PctI | GAATGC | 1 cut(s) | 908 |
| PdmI | GAANNNNTTC | 1 cut(s) | 270 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 94 |
| PkrI | GCNGC | 2 cut(s) | 184, 752 |
| PleI | GAGTC | 2 cut(s) | 332, 871 |
| PpsI | GAGTC | 2 cut(s) | 332, 871 |
| Ppu21I | YACGTR | 1 cut(s) | 290 |
| PshAI | GACNNNNGTC | 1 cut(s) | 677 |
| PspFI | CCCAGC | 1 cut(s) | 619 |
| PspN4I | GGNNCC | 2 cut(s) | 165, 166 |
| PspOMI | GGGCCC | 1 cut(s) | 164 |
| PspPI | GGNCC | 2 cut(s) | 164, 165 |
| PsuI | RGATCY | 2 cut(s) | 499, 541 |
| RsaI | GTAC | 1 cut(s) | 427 |
| RsaNI | GTAC | 1 cut(s) | 426 |
| RseI | CAYNNNNRTG | 2 cut(s) | 780, 830 |
| SaqAI | TTAA | 4 cut(s) | 101, 494, 546, 593 |
| SatI | GCNGC | 2 cut(s) | 183, 751 |
| Sau3AI | GATC | 7 cut(s) | 132, 277, 384, 499, 528, 541, 812 |
| Sau96I | GGNCC | 2 cut(s) | 164, 165 |
| SchI | GAGTC | 2 cut(s) | 332, 871 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SfaNI | GCATC | 2 cut(s) | 57, 114 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 780, 830 |
| SmlI | CTYRAG | 1 cut(s) | 311 |
| SmoI | CTYRAG | 1 cut(s) | 311 |
| SnaBI | TACGTA | 1 cut(s) | 290 |
| SphI | GCATGC | 2 cut(s) | 19, 630 |
| Sse9I | AATT | 1 cut(s) | 449 |
| SsiI | CCGC | 3 cut(s) | 82, 457, 617 |
| SspMI | CTAG | 1 cut(s) | 539 |
| StyI | CCWWGG | 3 cut(s) | 168, 198, 437 |
| TaaI | ACNGT | 4 cut(s) | 214, 425, 434, 758 |
| TaiI | ACGT | 2 cut(s) | 292, 348 |
| TaqI | TCGA | 1 cut(s) | 534 |
| TasI | AATT | 1 cut(s) | 449 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 4 cut(s) | 101, 494, 546, 593 |
| Tru9I | TTAA | 4 cut(s) | 101, 494, 546, 593 |
| TscAI | CASTG | 1 cut(s) | 26 |
| TseFI | GTSAC | 2 cut(s) | 76, 679 |
| TseI | GCWGC | 2 cut(s) | 182, 750 |
| Tsp45I | GTSAC | 2 cut(s) | 76, 679 |
| TspDTI | ATGAA | 5 cut(s) | 434, 451, 524, 792, 810 |
| TspGWI | ACGGA | 2 cut(s) | 491, 808 |
| TspRI | CASTG | 1 cut(s) | 26 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 94 |
| XapI | RAATTY | 1 cut(s) | 449 |
| XceI | RCATGY | 2 cut(s) | 19, 630 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 461 |
| XmiI | GTMKAC | 1 cut(s) | 292 |
| XmnI | GAANNNNTTC | 1 cut(s) | 270 |
| XspI | CTAG | 1 cut(s) | 539 |