Rroxscaffold_7G00211350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000128
Physical Location & Seq
Reverse (-)
61794788 .. 61797835
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211350.1

Sequence Viewer

Length: 384 bp
ATGCATCCTCAACGAAGAGATGAGCCGACTATAGAATTCATCAAATGTTGGCGTGCACTAAGTCTCAATTGCAAGGATCGACTTTCAGAATTGTTGGTGGTAGAAATGTGCATTCAAGGCATGTATTGGGACTTGTTGTATATCCTTCAAGGGATAAAACCTTGCACTTTTAAAGAAATTGTCACTCGAGCTCATGACATGGAACTCAACATTACTAGTCATGGCCGAAGAAAATGTGAAATCATTGAAGCACAGTCAAAAACGTGTCATGGAGTCTTTGGCGATCAACACAGCTCCTGTCAAGATCACAACATGAATCAAGAACCTCACGGGGCTTCGTTTGCTCAATATGTCCGGAGGATTAATGACAATTTTAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.97

Weight (kDa)

7.65

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 354
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 116, 149, 248
AhlI ACTAGT 1 cut(s) 215
AluBI AGCT 2 cut(s) 191, 294
AluI AGCT 2 cut(s) 191, 294
Alw21I GWGCWC 2 cut(s) 58, 193
Alw26I GTCTC 1 cut(s) 68
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 1 cut(s) 223
ApaLI GTGCAC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 35
AseI ATTAAT 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 58, 193
BcoDI GTCTC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 186
BmsI GCATC 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 354
BseGI GGATG 1 cut(s) 4
BseSI GKGCMC 1 cut(s) 58
BshFI GGCC 1 cut(s) 225
BsiHKAI GWGCWC 2 cut(s) 58, 193
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 58, 193
Bsp13I TCCGGA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 76, 283, 304
BspANI GGCC 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 354
BspHI TCATGA 1 cut(s) 193
BspPI GGATC 1 cut(s) 84
BssMI GATC 3 cut(s) 76, 283, 304
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 3 cut(s) 79, 286, 307
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 3 cut(s) 76, 283, 304
BstMWI GCNNNNNNNGC 2 cut(s) 117, 341
BstNSI RCATGY 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 297
CciI TCATGA 1 cut(s) 193
CviAII CATG 6 cut(s) 121, 194, 199, 221, 269, 313
CviJI RGCY 5 cut(s) 25, 191, 225, 294, 335
CviKI_1 RGCY 5 cut(s) 25, 191, 225, 294, 335
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 78, 285, 306
DpnII GATC 3 cut(s) 76, 283, 304
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 6 cut(s) 124, 197, 202, 224, 272, 316
FaiI YATR 9 cut(s) 32, 122, 141, 195, 200, 222, 270, 314, 351
FaqI GGGAC 1 cut(s) 143
FatI CATG 6 cut(s) 120, 193, 198, 220, 268, 312
FriOI GRGCYC 1 cut(s) 193
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 355
Hin1II CATG 6 cut(s) 124, 197, 202, 224, 272, 316
HinfI GANTC 2 cut(s) 273, 316
HpaII CCGG 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 4 cut(s) 194, 302, 320, 355
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 5 cut(s) 4, 56, 72, 111, 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 341
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 6 cut(s) 124, 197, 202, 224, 272, 316
Kpn2I TCCGGA 1 cut(s) 354
Kzo9I GATC 3 cut(s) 76, 283, 304
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 2 cut(s) 310, 368
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 78, 285, 306
MboI GATC 3 cut(s) 76, 283, 304
MboII GAAGA 2 cut(s) 27, 240
MfeI CAATTG 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 58, 193
MluCI AATT 5 cut(s) 35, 67, 89, 177, 370
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 4 cut(s) 18, 336, 351, 372
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 354
MseI TTAA 2 cut(s) 171, 363
MspI CCGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 117, 341
NdeII GATC 3 cut(s) 76, 283, 304
NlaIII CATG 6 cut(s) 124, 197, 202, 224, 272, 316
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 186
PagI TCATGA 1 cut(s) 193
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 316
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 171, 363
Sau3AI GATC 3 cut(s) 76, 283, 304
SchI GAGTC 1 cut(s) 282
SduI GDGCHC 2 cut(s) 58, 193
SetI ASST 6 cut(s) 163, 193, 266, 296, 328, 383
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 5 cut(s) 35, 67, 89, 177, 370
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 193
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 266
TaqI TCGA 2 cut(s) 79, 187
TasI AATT 5 cut(s) 35, 67, 89, 177, 370
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 171, 363
Tru9I TTAA 2 cut(s) 171, 363
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 28, 329
VneI GTGCAC 1 cut(s) 54
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 186
XspI CTAG 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.