Rmu_sc0015524.1_g000001

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015524.1
OG0000128
Physical Location & Seq
Reverse (-)
4063 .. 5140
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015524.1_g000001.1.cds

Sequence Viewer

Length: 489 bp
atgcaagtcatgatgatgggggcaaccatgcttgaagagcagatagccaatctgatggaggtggttcaaaagctcaccaataccgtcgaaaaaaaggatatgcagattgctcaactttggagcaggctcgagacacaaagtgatgaggattctgctaagggaatcaagccctgtacgtttgaagagctagctacacgagcacatgacatggagttgagtatagctagacacaaagggaagaaagagtcaattgttgaccaaaggaaagacaatgtcttcggaagcaagattaacaaggcaccgaagaaatctacaaaagaatcaatggccgtcaacattgccctagttaaaatctctacacgagataaggaggttaagaaagcagagccaacttgcacctatgatagaacaaagcgtttgttgaaggattctgacgtggcaggtatgttggaagatttacttgaggataaggtgatagagctcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

162

Amino Acids

18.36

Weight (kDa)

6.76

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 327
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 1 cut(s) 175
AgsI TTSAA 4 cut(s) 35, 68, 182, 424
AjiI CACGTC 1 cut(s) 436
AluBI AGCT 5 cut(s) 73, 187, 191, 224, 481
AluI AGCT 5 cut(s) 73, 187, 191, 224, 481
Alw21I GWGCWC 2 cut(s) 202, 483
Alw26I GTCTC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 327
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AsuHPI GGTGA 2 cut(s) 67, 484
AsuNHI GCTAGC 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 128
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 483
BauI CACGAG 2 cut(s) 195, 360
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 202, 483
BccI CCATC 2 cut(s) 10, 49
BceAI ACGGC 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 3 cut(s) 188, 225, 344
BfuAI ACCTGC 1 cut(s) 431
BmeT110I CYCGRG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 300
BmtI GCTAGC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 336
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 202, 483
BsiHKCI CYCGRG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 202, 483
BspANI GGCC 1 cut(s) 329
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 431
BspOI GCTAGC 1 cut(s) 191
BspQI GCTCTTC 2 cut(s) 30, 177
BspT107I GGYRCC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 336
BssSI CACGAG 2 cut(s) 195, 360
Bst2BI CACGAG 2 cut(s) 195, 360
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 30, 177
BstC8I GCNNGC 2 cut(s) 125, 189
BstDEI CTNAG 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 37, 197
BstV2I GAAGAC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 329
BtrI CACGTC 1 cut(s) 436
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 2 cut(s) 125, 189
CciI TCATGA 1 cut(s) 9
Csp6I GTAC 1 cut(s) 174
CviAII CATG 4 cut(s) 10, 28, 203, 208
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 156
DraIII CACNNNGTG 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 30, 177
EarI CTCTTC 2 cut(s) 30, 177
Ecl136II GAGCTC 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 483
FaeI CATG 4 cut(s) 13, 31, 206, 211
FaiI YATR 9 cut(s) 11, 29, 101, 204, 209, 221, 402, 446, 487
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 4 cut(s) 9, 27, 202, 207
FriOI GRGCYC 1 cut(s) 483
FspBI CTAG 3 cut(s) 188, 225, 344
HaeIII GGCC 1 cut(s) 329
Hin1II CATG 4 cut(s) 13, 31, 206, 211
HincII GTYRAC 2 cut(s) 256, 334
HindII GTYRAC 2 cut(s) 256, 334
HinfI GANTC 5 cut(s) 149, 162, 245, 320, 428
HphI GGTGA 2 cut(s) 67, 484
Hpy166II GTNNAC 2 cut(s) 256, 334
Hpy188I TCNGA 3 cut(s) 54, 281, 433
Hpy188III TCNNGA 2 cut(s) 10, 130
Hpy8I GTNNAC 2 cut(s) 256, 334
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 176, 435
HpyCH4V TGCA 3 cut(s) 4, 103, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 197
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 176, 435
Hsp92II CATG 4 cut(s) 13, 31, 206, 211
LguI GCTCTTC 2 cut(s) 30, 177
LmnI GCTCC 2 cut(s) 120, 486
LpnPI CCDG 3 cut(s) 109, 184, 426
MaeI CTAG 3 cut(s) 188, 225, 344
MaeII ACGT 2 cut(s) 176, 435
MboII GAAGA 6 cut(s) 47, 194, 250, 268, 316, 464
MfeI CAATTG 1 cut(s) 249
MhlI GDGCHC 2 cut(s) 202, 483
MluCI AATT 1 cut(s) 249
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 4 cut(s) 52, 139, 364, 457
MseI TTAA 3 cut(s) 291, 348, 375
MslI CAYNNNNRTG 1 cut(s) 14
MunI CAATTG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 37, 197
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 4 cut(s) 13, 31, 206, 211
NlaIV GGNNCC 1 cut(s) 300
PaeR7I CTCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 9
PciSI GCTCTTC 2 cut(s) 30, 177
PfeI GAWTC 4 cut(s) 149, 162, 320, 428
PflFI GACNNNGTC 1 cut(s) 272
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 483
SapI GCTCTTC 2 cut(s) 30, 177
SaqAI TTAA 3 cut(s) 291, 348, 375
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 2 cut(s) 202, 483
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 128, 461
SmoI CTYRAG 2 cut(s) 128, 461
Sse9I AATT 1 cut(s) 249
SspMI CTAG 3 cut(s) 188, 225, 344
SstI GAGCTC 1 cut(s) 483
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 179, 438
TaqI TCGA 2 cut(s) 87, 129
TasI AATT 1 cut(s) 249
TfiI GAWTC 4 cut(s) 149, 162, 320, 428
Tru1I TTAA 3 cut(s) 291, 348, 375
Tru9I TTAA 3 cut(s) 291, 348, 375
Tth111I GACNNNGTC 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 3 cut(s) 188, 225, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.