pycom12g08630

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000128
Physical Location & Seq
Forward (+)
10095937 .. 10096257
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g08630.1

Sequence Viewer

Length: 321 bp
ATGTGCACATGTTTTGCCACCCATGACGTAATTAACTTCACTGACGAAGACCTACTGTTGGGATCAAAGCCTCACAACCGTCCTCTCTTCGTCTCCGGGTACATAAAGGAATACAAGTCAACCGCAATGCTTGTGGATGGTGGGTCAGCCATAAACATCATGCCAAAATCAACAATGACCATAATCGGCATCAAGGTGAATGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATAGGTATGATCCGAGTAGAGATGACCATGGAGAGCTCAAATCAAGCACGATATTCCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

107

Amino Acids

11.71

Weight (kDa)

7.8

Isoelectric Point (pI)

24.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AclWI GGATC 3 cut(s) 70, 220, 262
AcvI CACGTG 1 cut(s) 318
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw21I GWGCWC 2 cut(s) 8, 296
Alw26I GTCTC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 3 cut(s) 70, 220, 262
ApaLI GTGCAC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 296
BbrPI CACGTG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 8, 296
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 97, 230
BmrFI CCNGG 2 cut(s) 97, 230
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 229, 241, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 3 cut(s) 229, 241, 285
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 8, 296
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 8, 296
Bsp143I GATC 3 cut(s) 62, 225, 267
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 204
BspPI GGATC 3 cut(s) 70, 220, 262
BsrDI GCAATG 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 229, 241, 285
BssMI GATC 3 cut(s) 62, 225, 267
BssT1I CCWWGG 2 cut(s) 241, 285
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 57, 80
Bst6I CTCTTC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 65, 228, 270
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 3 cut(s) 62, 225, 267
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 95, 228
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 100
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 4 cut(s) 9, 23, 160, 286
CviJI RGCY 4 cut(s) 70, 149, 216, 294
CviKI_1 RGCY 4 cut(s) 70, 149, 216, 294
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 64, 227, 269
DpnII GATC 3 cut(s) 62, 225, 267
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 294
Eco130I CCWWGG 2 cut(s) 241, 285
Eco24I GRGCYC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 294
Eco72I CACGTG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 2 cut(s) 241, 285
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 241, 285
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 4 cut(s) 12, 26, 163, 289
FaiI YATR 8 cut(s) 10, 24, 104, 152, 161, 182, 266, 287
FatI CATG 4 cut(s) 8, 22, 159, 285
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 296
HapII CCGG 1 cut(s) 96
Hin1II CATG 4 cut(s) 12, 26, 163, 289
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 6, 120
Hpy188I TCNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 6, 120
HpyCH4III ACNGT 2 cut(s) 57, 80
HpyCH4IV ACGT 2 cut(s) 27, 317
HpyCH4V TGCA 1 cut(s) 6
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 2 cut(s) 27, 317
Hsp92II CATG 4 cut(s) 12, 26, 163, 289
Kzo9I GATC 3 cut(s) 62, 225, 267
LpnPI CCDG 4 cut(s) 109, 215, 224, 242
LweI GCATC 1 cut(s) 198
MaeII ACGT 2 cut(s) 27, 317
MalI GATC 3 cut(s) 64, 227, 269
MboI GATC 3 cut(s) 62, 225, 267
MboII GAAGA 2 cut(s) 59, 79
MhlI GDGCHC 2 cut(s) 8, 296
MluCI AATT 1 cut(s) 30
MnlI CCTC 3 cut(s) 81, 93, 239
MseI TTAA 2 cut(s) 33, 237
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 97, 230
MvaI CCWGG 1 cut(s) 230
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 285
NdeII GATC 3 cut(s) 62, 225, 267
NlaIII CATG 4 cut(s) 12, 26, 163, 289
NspI RCATGY 1 cut(s) 12
PciI ACATGT 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 318
PmlI CACGTG 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 318
PscI ACATGT 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 228
PspCI CACGTG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 228
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 33, 237
Sau3AI GATC 3 cut(s) 62, 225, 267
ScrFI CCNGG 2 cut(s) 97, 230
SduI GDGCHC 2 cut(s) 8, 296
SetI ASST 6 cut(s) 30, 54, 198, 265, 296, 320
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 123
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 95, 228
StyI CCWWGG 2 cut(s) 241, 285
TaaI ACNGT 2 cut(s) 57, 80
TaiI ACGT 2 cut(s) 30, 320
TasI AATT 1 cut(s) 30
Tru1I TTAA 2 cut(s) 33, 237
Tru9I TTAA 2 cut(s) 33, 237
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 4
XceI RCATGY 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.