pycom09g03550

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
2630423 .. 2631181
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03550.1

Sequence Viewer

Length: 759 bp
ATGCTGTCAGAAGGACCGAACGCACCCATATTTCGGTATATCCCGATGTCAAGAAGAAACAATGGTCAATCTCTATTCGAAACTGGAACAAGAAAAGCCGACACACAGTGGCACACGGATAATGTGAAGTTGCTCAAGACAAATGCAGTTTTGCCTTTGACACAGCTAGGGGGTGTTAAGGTCGCAAGACTACCACAAGGCTTCATAAAAGCTCTAGCAAAGAAGGTGGAATCAAGCTTTCTTCCAACCAAGAGGACCGAGGAAGGTTTCGACCCTAACGCCTACAAACTCATGTCAAAGGTCGGGTACGACTTCGCTTCTTCTGCGGTGGCTGGAAAGAAGGTTTCAAACACTGTCAATGATGAAGAACGTAACCTCACCAAAACTCAAAATAAGTTGAAGGAGCATGGTTACGGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTATGATGATTTCAAACAAAGCGAAAAACACTAGCACTCAATACGTCAGCGTGAGCATTGAACAAGACCAAGAAGAGCCTAAACCCTCCTCTCGGACGTTGGTCTTCGATAGGATGAGCCATTCAAGCTCCAGAACTTCAGTGCTTAATCACATTGGTGGTCAAGACCGAACCTCTGTCTTCAAGAGGCTTAACGCGCCAACATCCCAAAGCTCTGTTTTTGAAAGGTTATTAAAGCTTAAGAAACAAAGCAACACAGTTATCTCTCCTCTGCGACGATCGAGCTTCAGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

253

Amino Acids

28.04

Weight (kDa)

10.2

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 656
AciI CCGC 1 cut(s) 326
AcuI CTGAAG 2 cut(s) 582, 730
AdeI CACNNNGTG 1 cut(s) 108
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 33, 552
AflII CTTAAG 1 cut(s) 698
AgsI TTSAA 7 cut(s) 348, 400, 474, 521, 585, 643, 683
AleI CACNNNNGTG 1 cut(s) 615
AluBI AGCT 7 cut(s) 166, 212, 237, 588, 672, 697, 744
AluI AGCT 7 cut(s) 166, 212, 237, 588, 672, 697, 744
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 14, 255
AsuHPI GGTGA 1 cut(s) 370
AsuII TTCGAA 1 cut(s) 78
AvaII GGWCC 2 cut(s) 14, 255
BbsI GAAGAC 2 cut(s) 556, 631
BfaI CTAG 3 cut(s) 167, 215, 492
BfrI CTTAAG 1 cut(s) 698
Bme18I GGWCC 2 cut(s) 14, 255
BmgT120I GGNCC 2 cut(s) 14, 255
BoxI GACNNNNGTC 1 cut(s) 560
BpiI GAAGAC 2 cut(s) 556, 631
BpmI CTGGAG 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 552
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 579, 662
BseLI CCNNNNNNNGG 2 cut(s) 33, 552
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 538, 717
Bsh1236I CGCG 1 cut(s) 656
Bsh1285I CGRYCG 1 cut(s) 740
BsiEI CGRYCG 1 cut(s) 740
BsiSI CCGG 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 33, 552
Bsp119I TTCGAA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 737
BspACI CCGC 1 cut(s) 326
BspFNI CGCG 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 528
BspT104I TTCGAA 1 cut(s) 78
BspTI CTTAAG 1 cut(s) 698
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 737
Bst4CI ACNGT 3 cut(s) 108, 355, 718
Bst6I CTCTTC 1 cut(s) 528
BstAFI CTTAAG 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 78
BstF5I GGATG 2 cut(s) 579, 662
BstFNI CGCG 1 cut(s) 656
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 1 cut(s) 740
BstMBI GATC 1 cut(s) 737
BstMCI CGRYCG 1 cut(s) 740
BstMWI GCNNNNNNNGC 3 cut(s) 323, 585, 655
BstPAI GACNNNNGTC 1 cut(s) 560
BstUI CGCG 1 cut(s) 656
BstV2I GAAGAC 2 cut(s) 556, 631
BtsCI GGATG 2 cut(s) 579, 662
BtsIMutI CAGTG 3 cut(s) 113, 351, 606
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 2 cut(s) 14, 255
Csp6I GTAC 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 2 cut(s) 292, 407
CviQI GTAC 1 cut(s) 307
DpnI GATC 1 cut(s) 739
DpnII GATC 1 cut(s) 737
DraIII CACNNNGTG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 14, 255
Eco57I CTGAAG 2 cut(s) 582, 730
FaeI CATG 2 cut(s) 295, 410
FaiI YATR 6 cut(s) 29, 39, 206, 293, 408, 464
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 2 cut(s) 291, 406
FokI GGATG 2 cut(s) 586, 649
FspBI CTAG 3 cut(s) 167, 215, 492
GlaI GCGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 574
HapII CCGG 1 cut(s) 435
HhaI GCGC 1 cut(s) 658
Hin1II CATG 2 cut(s) 295, 410
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 2 cut(s) 235, 695
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 10, 555, 749
Hpy188III TCNNGA 6 cut(s) 43, 51, 136, 591, 623, 643
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 5 cut(s) 5, 217, 257, 334, 394
HpyCH4III ACNGT 3 cut(s) 108, 355, 718
HpyCH4IV ACGT 3 cut(s) 370, 504, 557
HpyCH4V TGCA 2 cut(s) 146, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 585, 655
HpySE526I ACGT 3 cut(s) 370, 504, 557
Hsp92II CATG 2 cut(s) 295, 410
HspAI GCGC 1 cut(s) 656
Kzo9I GATC 1 cut(s) 737
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 2 cut(s) 403, 593
LpnPI CCDG 4 cut(s) 69, 318, 448, 604
MaeI CTAG 3 cut(s) 167, 215, 492
MaeII ACGT 3 cut(s) 370, 504, 557
MaeIII GTNAC 2 cut(s) 371, 410
MalI GATC 1 cut(s) 739
MboI GATC 1 cut(s) 737
MboII GAAGA 7 cut(s) 66, 233, 312, 377, 545, 556, 631
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 8 cut(s) 246, 253, 386, 556, 559, 639, 643, 738
MseI TTAA 5 cut(s) 177, 606, 651, 692, 699
MslI CAYNNNNRTG 1 cut(s) 615
MspCI CTTAAG 1 cut(s) 698
MspI CCGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 3 cut(s) 323, 585, 655
NdeII GATC 1 cut(s) 737
NlaIII CATG 2 cut(s) 295, 410
NspV TTCGAA 1 cut(s) 78
OliI CACNNNNGTG 1 cut(s) 615
PciSI GCTCTTC 1 cut(s) 528
PfeI GAWTC 1 cut(s) 230
Ple19I CGATCG 1 cut(s) 740
PshAI GACNNNNGTC 1 cut(s) 560
PspPI GGNCC 2 cut(s) 14, 255
PvuI CGATCG 1 cut(s) 740
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 615
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 5 cut(s) 177, 606, 651, 692, 699
Sau3AI GATC 1 cut(s) 737
Sau96I GGNCC 2 cut(s) 14, 255
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 2 cut(s) 14, 255
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 2 cut(s) 134, 698
SmoI CTYRAG 2 cut(s) 134, 698
SsiI CCGC 1 cut(s) 326
SspMI CTAG 3 cut(s) 167, 215, 492
TaaI ACNGT 3 cut(s) 108, 355, 718
TaiI ACGT 3 cut(s) 373, 507, 560
TaqI TCGA 4 cut(s) 78, 270, 567, 740
TaqII GACCGA 3 cut(s) 31, 272, 642
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 5 cut(s) 177, 606, 651, 692, 699
Tru9I TTAA 5 cut(s) 177, 606, 651, 692, 699
TscAI CASTG 3 cut(s) 113, 358, 606
TspDTI ATGAA 2 cut(s) 193, 378
TspGWI ACGGA 2 cut(s) 131, 429
TspRI CASTG 3 cut(s) 113, 358, 606
Vha464I CTTAAG 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 14, 255
XspI CTAG 3 cut(s) 167, 215, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.