Prupe.5G057200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000120
Physical Location & Seq
Reverse (-)
6207968 .. 6209560
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G057200.1

Sequence Viewer

Length: 489 bp
ATGGCAACCTCATCCACTCCCCTCAATGATCTCAATATGAATTTATCCATTGCGCTACCGTCGACCCAAATAAATGCTTCTCCAAACCATGTCTTCCCAAACTCCTCCTACCTTCATGGCACGGCCTCAACATTCACTGAGGCAATGCCGAACAGAGTAATATTGCTGGGAGGCATGGTTGCCAGTAGACTCACACCGACAGATCATCGGCACATAGCACAGAGGTTTGACAGGGTTGCAGTAGAGGAGTCCCACGCCCTAACCATGCACAACACGGCCTTGGCTACAAAGGTTGGTATGTGGCTACTAGCCAAGGCACAAGAGTGTGCTGTGCTAATTGAGGAAGTAGCTTCTTTGAAGGCTCAAGTTGCAGAGTCACAACGGATGTTGGATTATGCCAACAGACAGATAGGAGCACTGAAAAAGAGAAACGCAGACTATGCAGAGCTAGTGCAGGTCCTACAAGAAAAAGCCAACAGAGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.77

Weight (kDa)

7.02

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 445
AccI GTMKAC 2 cut(s) 62, 187
AcsI RAATTY 1 cut(s) 40
AgsI TTSAA 1 cut(s) 358
AleI CACNNNNGTG 1 cut(s) 322
AluBI AGCT 2 cut(s) 350, 448
AluI AGCT 2 cut(s) 350, 448
Alw21I GWGCWC 1 cut(s) 418
AoxI GGCC 2 cut(s) 123, 276
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 418
BceAI ACGGC 2 cut(s) 138, 291
BfaI CTAG 2 cut(s) 308, 449
BfuAI ACCTGC 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 279, 312
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 2 cut(s) 48, 150
BseDI CCNNGG 2 cut(s) 279, 312
BseGI GGATG 2 cut(s) 11, 390
BseMI GCAATG 2 cut(s) 48, 150
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 94, 260
BseYI CCCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 2 cut(s) 125, 278
BsiHKAI GWGCWC 1 cut(s) 418
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 2 cut(s) 125, 278
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 28, 202
BspANI GGCC 2 cut(s) 125, 278
BspCNI CTCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 445
BsrDI GCAATG 2 cut(s) 48, 150
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 279, 312
BssMI GATC 2 cut(s) 28, 202
BssT1I CCWWGG 2 cut(s) 279, 312
Bst4CI ACNGT 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 440
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 11, 390
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 2 cut(s) 31, 205
BstMBI GATC 2 cut(s) 28, 202
BstMWI GCNNNNNNNGC 2 cut(s) 368, 440
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 125, 278
BtsCI GGATG 2 cut(s) 11, 390
BtsIMutI CAGTG 2 cut(s) 135, 416
BveI ACCTGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 457
CviAII CATG 4 cut(s) 89, 116, 175, 265
CviJI RGCY 9 cut(s) 125, 278, 284, 304, 311, 350, 362, 448, 473
CviKI_1 RGCY 9 cut(s) 125, 278, 284, 304, 311, 350, 362, 448, 473
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 30, 204
DpnII GATC 2 cut(s) 28, 202
Eco130I CCWWGG 2 cut(s) 279, 312
Eco47I GGWCC 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 279, 312
ErhI CCWWGG 2 cut(s) 279, 312
FaeI CATG 4 cut(s) 92, 119, 178, 268
FaiI YATR 9 cut(s) 38, 90, 117, 176, 215, 266, 299, 396, 441
FaqI GGGAC 1 cut(s) 235
FatI CATG 4 cut(s) 88, 115, 174, 264
FblI GTMKAC 2 cut(s) 62, 187
FokI GGATG 1 cut(s) 397
FspBI CTAG 2 cut(s) 308, 449
GlaI GCGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 170
HaeIII GGCC 2 cut(s) 125, 278
HhaI GCGC 1 cut(s) 55
Hin1II CATG 4 cut(s) 92, 119, 178, 268
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 189, 248, 374
Hpy166II GTNNAC 2 cut(s) 63, 188
Hpy8I GTNNAC 2 cut(s) 63, 188
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 122, 352
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 5 cut(s) 239, 268, 371, 443, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 440
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 4 cut(s) 92, 119, 178, 268
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 28, 202
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 4 cut(s) 152, 196, 217, 440
MaeI CTAG 2 cut(s) 308, 449
MaeIII GTNAC 1 cut(s) 375
MalI GATC 2 cut(s) 30, 204
MboI GATC 2 cut(s) 28, 202
MboII GAAGA 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 2 cut(s) 40, 336
MlyI GAGTC 3 cut(s) 183, 257, 383
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 9 cut(s) 19, 32, 115, 133, 136, 164, 216, 238, 334
MslI CAYNNNNRTG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 368, 440
NdeII GATC 2 cut(s) 28, 202
NlaIII CATG 4 cut(s) 92, 119, 178, 268
NmuCI GTSAC 1 cut(s) 375
OliI CACNNNNGTG 1 cut(s) 322
PleI GAGTC 3 cut(s) 183, 256, 382
PpsI GAGTC 3 cut(s) 183, 256, 382
PpuMI RGGWCCY 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 457
PspFI CCCAGC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 457
PspPPI RGGWCCY 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 322
SalI GTCGAC 1 cut(s) 61
Sau3AI GATC 2 cut(s) 28, 202
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 3 cut(s) 183, 257, 383
SduI GDGCHC 1 cut(s) 418
SetI ASST 7 cut(s) 11, 114, 227, 294, 352, 450, 459
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
Sse9I AATT 2 cut(s) 40, 336
SspI AATATT 1 cut(s) 162
SspMI CTAG 2 cut(s) 308, 449
StyI CCWWGG 2 cut(s) 279, 312
TaaI ACNGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 62
TasI AATT 2 cut(s) 40, 336
TscAI CASTG 2 cut(s) 142, 423
TseFI GTSAC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 2 cut(s) 53, 104
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 2 cut(s) 142, 423
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 62, 187
XspI CTAG 2 cut(s) 308, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.