Nudix hydrolase 3-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 763, 1101, 1887 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1545, 1673 |
| AccBSI | CCGCTC | 2 cut(s) | 1592, 1607 |
| AccI | GTMKAC | 2 cut(s) | 668, 719 |
| AccII | CGCG | 6 cut(s) | 824, 905, 976, 1079, 1084, 1916 |
| AclWI | GGATC | 2 cut(s) | 727, 1974 |
| AcoI | YGGCCR | 2 cut(s) | 1242, 1547 |
| AcuI | CTGAAG | 1 cut(s) | 621 |
| AcyI | GRCGYC | 6 cut(s) | 764, 786, 808, 1102, 1161, 1888 |
| AfaI | GTAC | 3 cut(s) | 700, 1388, 2076 |
| AfeI | AGCGCT | 1 cut(s) | 1728 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 337, 1088, 1136, 1330, 1545, 1673, 1884 |
| AflII | CTTAAG | 2 cut(s) | 1361, 1382 |
| AflIII | ACRYGT | 5 cut(s) | 471, 822, 903, 974, 2185 |
| AjnI | CCWGG | 3 cut(s) | 536, 1528, 1771 |
| AleI | CACNNNNGTG | 1 cut(s) | 2054 |
| AluBI | AGCT | 7 cut(s) | 928, 1172, 1184, 1284, 1381, 1447, 1456 |
| AluI | AGCT | 7 cut(s) | 928, 1172, 1184, 1284, 1381, 1447, 1456 |
| Alw21I | GWGCWC | 2 cut(s) | 1286, 2051 |
| Alw26I | GTCTC | 3 cut(s) | 71, 274, 495 |
| AlwI | GGATC | 2 cut(s) | 727, 1974 |
| Ama87I | CYCGRG | 1 cut(s) | 2207 |
| Aor51HI | AGCGCT | 1 cut(s) | 1728 |
| AoxI | GGCC | 4 cut(s) | 1012, 1242, 1547, 1560 |
| ApeKI | GCWGC | 4 cut(s) | 466, 1216, 1456, 1746 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 712, 744, 1474, 1506 |
| AscI | GGCGCGCC | 1 cut(s) | 1077 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 360 |
| AspLEI | GCGC | 9 cut(s) | 604, 766, 864, 1079, 1081, 1104, 1729, 1890, 1918 |
| AspS9I | GGNCC | 7 cut(s) | 328, 1013, 1127, 1230, 1320, 1976, 2220 |
| AsuC2I | CCSGG | 4 cut(s) | 1879, 1980, 2208, 2209 |
| AsuHPI | GGTGA | 4 cut(s) | 17, 1151, 1989, 2068 |
| AsuII | TTCGAA | 1 cut(s) | 1803 |
| AsuNHI | GCTAGC | 1 cut(s) | 2161 |
| AvaI | CYCGRG | 1 cut(s) | 2207 |
| AvaII | GGWCC | 6 cut(s) | 328, 1127, 1230, 1320, 1976, 2220 |
| BalI | TGGCCA | 1 cut(s) | 1549 |
| BanI | GGYRCC | 3 cut(s) | 763, 1101, 1887 |
| BanII | GRGCYC | 1 cut(s) | 1286 |
| BbsI | GAAGAC | 2 cut(s) | 900, 1149 |
| Bbv12I | GWGCWC | 2 cut(s) | 1286, 2051 |
| BbvI | GCAGC | 4 cut(s) | 478, 1203, 1443, 1758 |
| BccI | CCATC | 3 cut(s) | 176, 1040, 1336 |
| BceAI | ACGGC | 3 cut(s) | 470, 1229, 1901 |
| BciT130I | CCWGG | 3 cut(s) | 538, 1530, 1773 |
| BcnI | CCSGG | 4 cut(s) | 1879, 1980, 2208, 2209 |
| BcoDI | GTCTC | 3 cut(s) | 71, 274, 495 |
| BfaI | CTAG | 3 cut(s) | 1185, 1656, 2162 |
| BfoI | RGCGCY | 5 cut(s) | 605, 767, 1105, 1730, 1891 |
| BfrI | CTTAAG | 2 cut(s) | 1361, 1382 |
| BisI | GCNGC | 6 cut(s) | 467, 1082, 1217, 1457, 1503, 1747 |
| BlsI | GCNGC | 6 cut(s) | 468, 1083, 1218, 1458, 1504, 1748 |
| Bme1390I | CCNGG | 7 cut(s) | 538, 1530, 1773, 1879, 1980, 2208, 2209 |
| Bme18I | GGWCC | 6 cut(s) | 328, 1127, 1230, 1320, 1976, 2220 |
| BmeT110I | CYCGRG | 1 cut(s) | 2207 |
| BmgT120I | GGNCC | 7 cut(s) | 328, 1013, 1127, 1230, 1320, 1976, 2220 |
| BmiI | GGNNCC | 7 cut(s) | 162, 330, 765, 1103, 1190, 1322, 1889 |
| BmrFI | CCNGG | 7 cut(s) | 538, 1530, 1773, 1879, 1980, 2208, 2209 |
| BmsI | GCATC | 9 cut(s) | 36, 1143, 1572, 1587, 1602, 1617, 1632, 1890, 2148 |
| BmtI | GCTAGC | 1 cut(s) | 2165 |
| BoxI | GACNNNNGTC | 1 cut(s) | 664 |
| BpiI | GAAGAC | 2 cut(s) | 900, 1149 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 238, 270 |
| BpmI | CTGGAG | 2 cut(s) | 520, 1755 |
| Bpu14I | TTCGAA | 1 cut(s) | 1803 |
| BpuMI | CCSGG | 4 cut(s) | 1879, 1980, 2208, 2209 |
| BsaBI | GATNNNNATC | 1 cut(s) | 882 |
| BsaHI | GRCGYC | 6 cut(s) | 764, 786, 808, 1102, 1161, 1888 |
| BsaJI | CCNNGG | 8 cut(s) | 117, 1667, 1852, 1877, 1979, 2166, 2206, 2207 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 337, 1088, 1136, 1330, 1545, 1673, 1884 |
| Bse8I | GATNNNNATC | 1 cut(s) | 882 |
| BseBI | CCWGG | 3 cut(s) | 538, 1530, 1773 |
| BseDI | CCNNGG | 8 cut(s) | 117, 1667, 1852, 1877, 1979, 2166, 2206, 2207 |
| BseGI | GGATG | 4 cut(s) | 1032, 1798, 2155, 2163 |
| BseJI | GATNNNNATC | 1 cut(s) | 882 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 337, 1088, 1136, 1330, 1545, 1673, 1884 |
| BseMII | CTCAG | 3 cut(s) | 269, 621, 770 |
| BsePI | GCGCGC | 1 cut(s) | 1077 |
| BseRI | GAGGAG | 1 cut(s) | 1184 |
| BseXI | GCAGC | 4 cut(s) | 478, 1203, 1443, 1758 |
| BseYI | CCCAGC | 1 cut(s) | 593 |
| BsgI | GTGCAG | 1 cut(s) | 803 |
| Bsh1236I | CGCG | 6 cut(s) | 824, 905, 976, 1079, 1084, 1916 |
| Bsh1285I | CGRYCG | 2 cut(s) | 507, 511 |
| BshFI | GGCC | 4 cut(s) | 1014, 1244, 1549, 1562 |
| BshNI | GGYRCC | 3 cut(s) | 763, 1101, 1887 |
| BsiEI | CGRYCG | 2 cut(s) | 507, 511 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1286, 2051 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2207 |
| BsiSI | CCGG | 8 cut(s) | 745, 945, 954, 1011, 1750, 1879, 1979, 2208 |
| BslFI | GGGAC | 3 cut(s) | 314, 1240, 1306 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 337, 1088, 1136, 1330, 1545, 1673, 1884 |
| BsmAI | GTCTC | 3 cut(s) | 71, 274, 495 |
| BsmBI | CGTCTC | 1 cut(s) | 71 |
| BsmFI | GGGAC | 3 cut(s) | 314, 1240, 1306 |
| BsmI | GAATGC | 3 cut(s) | 360, 362, 1573 |
| BsnI | GGCC | 4 cut(s) | 1014, 1244, 1549, 1562 |
| BsoBI | CYCGRG | 1 cut(s) | 2207 |
| Bsp119I | TTCGAA | 1 cut(s) | 1803 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1286, 2051 |
| Bsp1407I | TGTACA | 1 cut(s) | 2074 |
| Bsp143I | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| BspANI | GGCC | 4 cut(s) | 1014, 1244, 1549, 1562 |
| BspCNI | CTCAG | 3 cut(s) | 268, 620, 771 |
| BspFNI | CGCG | 6 cut(s) | 824, 905, 976, 1079, 1084, 1916 |
| BspLI | GGNNCC | 7 cut(s) | 162, 330, 765, 1103, 1190, 1322, 1889 |
| BspOI | GCTAGC | 1 cut(s) | 2165 |
| BspPI | GGATC | 2 cut(s) | 727, 1974 |
| BspT104I | TTCGAA | 1 cut(s) | 1803 |
| BspT107I | GGYRCC | 3 cut(s) | 763, 1101, 1887 |
| BspTI | CTTAAG | 2 cut(s) | 1361, 1382 |
| BsrBI | CCGCTC | 2 cut(s) | 1592, 1607 |
| BsrGI | TGTACA | 1 cut(s) | 2074 |
| BssECI | CCNNGG | 8 cut(s) | 117, 1667, 1852, 1877, 1979, 2166, 2206, 2207 |
| BssHII | GCGCGC | 1 cut(s) | 1077 |
| BssMI | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| BssNI | GRCGYC | 6 cut(s) | 764, 786, 808, 1102, 1161, 1888 |
| BssT1I | CCWWGG | 4 cut(s) | 117, 1667, 1852, 2166 |
| Bst2UI | CCWGG | 3 cut(s) | 538, 1530, 1773 |
| Bst4CI | ACNGT | 5 cut(s) | 512, 703, 1127, 1230, 1490 |
| Bst6I | CTCTTC | 6 cut(s) | 62, 116, 614, 774, 1429, 1433 |
| BstACI | GRCGYC | 6 cut(s) | 764, 786, 808, 1102, 1161, 1888 |
| BstAFI | CTTAAG | 2 cut(s) | 1361, 1382 |
| BstAUI | TGTACA | 1 cut(s) | 2074 |
| BstBI | TTCGAA | 1 cut(s) | 1803 |
| BstDEI | CTNAG | 4 cut(s) | 255, 607, 779, 1265 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1134 |
| BstF5I | GGATG | 4 cut(s) | 1032, 1798, 2155, 2163 |
| BstFNI | CGCG | 6 cut(s) | 824, 905, 976, 1079, 1084, 1916 |
| BstH2I | RGCGCY | 5 cut(s) | 605, 767, 1105, 1730, 1891 |
| BstHHI | GCGC | 9 cut(s) | 604, 766, 864, 1079, 1081, 1104, 1729, 1890, 1918 |
| BstKTI | GATC | 4 cut(s) | 507, 735, 1374, 1969 |
| BstMAI | GTCTC | 3 cut(s) | 71, 274, 495 |
| BstMBI | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| BstMCI | CGRYCG | 2 cut(s) | 507, 511 |
| BstNI | CCWGG | 3 cut(s) | 538, 1530, 1773 |
| BstNSI | RCATGY | 6 cut(s) | 279, 475, 500, 1409, 1480, 2189 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 664 |
| BstSCI | CCNGG | 7 cut(s) | 536, 1528, 1771, 1877, 1978, 2206, 2207 |
| BstUI | CGCG | 6 cut(s) | 824, 905, 976, 1079, 1084, 1916 |
| BstV1I | GCAGC | 4 cut(s) | 478, 1203, 1443, 1758 |
| BstV2I | GAAGAC | 2 cut(s) | 900, 1149 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 544 |
| BsuRI | GGCC | 4 cut(s) | 1014, 1244, 1549, 1562 |
| BtsCI | GGATG | 4 cut(s) | 1032, 1798, 2155, 2163 |
| BtsIMutI | CAGTG | 3 cut(s) | 974, 1280, 1707 |
| CfoI | GCGC | 9 cut(s) | 604, 766, 864, 1079, 1081, 1104, 1729, 1890, 1918 |
| Cfr13I | GGNCC | 7 cut(s) | 328, 1013, 1127, 1230, 1320, 1976, 2220 |
| Cfr9I | CCCGGG | 1 cut(s) | 2207 |
| CpoI | CGGWCCG | 1 cut(s) | 1230 |
| CseI | GACGC | 9 cut(s) | 88, 794, 816, 836, 894, 965, 982, 1073, 1169 |
| Csp6I | GTAC | 3 cut(s) | 699, 1387, 2075 |
| CspI | CGGWCCG | 1 cut(s) | 1230 |
| CviAII | CATG | 9 cut(s) | 276, 389, 472, 497, 1297, 1406, 1435, 1477, 2186 |
| CviQI | GTAC | 3 cut(s) | 699, 1387, 2075 |
| DdeI | CTNAG | 4 cut(s) | 255, 607, 779, 1265 |
| DinI | GGCGCC | 3 cut(s) | 765, 1103, 1889 |
| DpnI | GATC | 4 cut(s) | 506, 734, 1373, 1968 |
| DpnII | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| EaeI | YGGCCR | 2 cut(s) | 1242, 1547 |
| Eam1104I | CTCTTC | 6 cut(s) | 62, 116, 614, 774, 1429, 1433 |
| EarI | CTCTTC | 6 cut(s) | 62, 116, 614, 774, 1429, 1433 |
| EciI | GGCGGA | 1 cut(s) | 1609 |
| Ecl136II | GAGCTC | 1 cut(s) | 1284 |
| Eco130I | CCWWGG | 4 cut(s) | 117, 1667, 1852, 2166 |
| Eco147I | AGGCCT | 1 cut(s) | 1562 |
| Eco24I | GRGCYC | 1 cut(s) | 1286 |
| Eco47I | GGWCC | 6 cut(s) | 328, 1127, 1230, 1320, 1976, 2220 |
| Eco47III | AGCGCT | 1 cut(s) | 1728 |
| Eco53kI | GAGCTC | 1 cut(s) | 1284 |
| Eco57I | CTGAAG | 1 cut(s) | 621 |
| Eco88I | CYCGRG | 1 cut(s) | 2207 |
| EcoICRI | GAGCTC | 1 cut(s) | 1284 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1134 |
| EcoRI | GAATTC | 1 cut(s) | 986 |
| EcoRII | CCWGG | 3 cut(s) | 536, 1528, 1771 |
| EcoT14I | CCWWGG | 4 cut(s) | 117, 1667, 1852, 2166 |
| EcoT22I | ATGCAT | 1 cut(s) | 362 |
| EcoT38I | GRGCYC | 1 cut(s) | 1286 |
| EgeI | GGCGCC | 3 cut(s) | 765, 1103, 1889 |
| EheI | GGCGCC | 3 cut(s) | 765, 1103, 1889 |
| ErhI | CCWWGG | 4 cut(s) | 117, 1667, 1852, 2166 |
| Esp3I | CGTCTC | 1 cut(s) | 71 |
| FaeI | CATG | 9 cut(s) | 279, 392, 475, 500, 1300, 1409, 1438, 1480, 2189 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1713, 1745 |
| FaqI | GGGAC | 3 cut(s) | 314, 1240, 1306 |
| FatI | CATG | 9 cut(s) | 275, 388, 471, 496, 1296, 1405, 1434, 1476, 2185 |
| FauI | CCCGC | 3 cut(s) | 744, 1331, 1657 |
| FblI | GTMKAC | 2 cut(s) | 668, 719 |
| Fnu4HI | GCNGC | 6 cut(s) | 467, 1082, 1217, 1457, 1503, 1747 |
| FokI | GGATG | 4 cut(s) | 1019, 1805, 2162, 2170 |
| FriOI | GRGCYC | 1 cut(s) | 1286 |
| Fsp4HI | GCNGC | 6 cut(s) | 467, 1082, 1217, 1457, 1503, 1747 |
| FspBI | CTAG | 3 cut(s) | 1185, 1656, 2162 |
| GlaI | GCGC | 9 cut(s) | 603, 765, 863, 1078, 1080, 1103, 1728, 1889, 1917 |
| GluI | GCNGC | 6 cut(s) | 467, 1082, 1217, 1457, 1503, 1747 |
| GsaI | CCCAGC | 1 cut(s) | 597 |
| GsuI | CTGGAG | 2 cut(s) | 520, 1755 |
| HaeII | RGCGCY | 5 cut(s) | 605, 767, 1105, 1730, 1891 |
| HaeIII | GGCC | 4 cut(s) | 1014, 1244, 1549, 1562 |
| HapII | CCGG | 8 cut(s) | 745, 945, 954, 1011, 1750, 1879, 1979, 2208 |
| HgaI | GACGC | 9 cut(s) | 88, 794, 816, 836, 894, 965, 982, 1073, 1169 |
| HhaI | GCGC | 9 cut(s) | 604, 766, 864, 1079, 1081, 1104, 1729, 1890, 1918 |
| Hin1I | GRCGYC | 6 cut(s) | 764, 786, 808, 1102, 1161, 1888 |
| Hin1II | CATG | 9 cut(s) | 279, 392, 475, 500, 1300, 1409, 1438, 1480, 2189 |
| Hin6I | GCGC | 9 cut(s) | 602, 764, 862, 1077, 1079, 1102, 1727, 1888, 1916 |
| HinP1I | GCGC | 9 cut(s) | 602, 764, 862, 1077, 1079, 1102, 1727, 1888, 1916 |
| HincII | GTYRAC | 3 cut(s) | 669, 720, 1304 |
| HindII | GTYRAC | 3 cut(s) | 669, 720, 1304 |
| HindIII | AAGCTT | 2 cut(s) | 926, 1445 |
| HpaII | CCGG | 8 cut(s) | 745, 945, 954, 1011, 1750, 1879, 1979, 2208 |
| HphI | GGTGA | 4 cut(s) | 17, 1151, 1989, 2068 |
| Hpy166II | GTNNAC | 7 cut(s) | 380, 669, 720, 972, 1304, 1783, 2077 |
| Hpy8I | GTNNAC | 7 cut(s) | 380, 669, 720, 972, 1304, 1783, 2077 |
| Hpy99I | CGWCG | 5 cut(s) | 788, 810, 852, 981, 1432 |
| HpyCH4III | ACNGT | 5 cut(s) | 512, 703, 1127, 1230, 1490 |
| HpyCH4IV | ACGT | 2 cut(s) | 1095, 1739 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 607, 779, 1265 |
| HpySE526I | ACGT | 2 cut(s) | 1095, 1739 |
| Hsp92I | GRCGYC | 6 cut(s) | 764, 786, 808, 1102, 1161, 1888 |
| Hsp92II | CATG | 9 cut(s) | 279, 392, 475, 500, 1300, 1409, 1438, 1480, 2189 |
| HspAI | GCGC | 9 cut(s) | 602, 764, 862, 1077, 1079, 1102, 1727, 1888, 1916 |
| KasI | GGCGCC | 3 cut(s) | 763, 1101, 1887 |
| Kzo9I | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| LmnI | GCTCC | 4 cut(s) | 316, 1597, 1612, 1642 |
| Lsp1109I | GCAGC | 4 cut(s) | 478, 1203, 1443, 1758 |
| LweI | GCATC | 9 cut(s) | 36, 1143, 1572, 1587, 1602, 1617, 1632, 1890, 2148 |
| MaeI | CTAG | 3 cut(s) | 1185, 1656, 2162 |
| MaeII | ACGT | 2 cut(s) | 1095, 1739 |
| MaeIII | GTNAC | 3 cut(s) | 1091, 1484, 2188 |
| MalI | GATC | 4 cut(s) | 506, 734, 1373, 1968 |
| MbiI | CCGCTC | 2 cut(s) | 1592, 1607 |
| MboI | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| MhlI | GDGCHC | 2 cut(s) | 1286, 2051 |
| MlsI | TGGCCA | 1 cut(s) | 1549 |
| MluI | ACGCGT | 3 cut(s) | 822, 903, 974 |
| MluNI | TGGCCA | 1 cut(s) | 1549 |
| Mly113I | GGCGCC | 3 cut(s) | 764, 1102, 1888 |
| MlyI | GAGTC | 3 cut(s) | 1001, 1139, 1262 |
| MmeI | TCCRAC | 3 cut(s) | 224, 605, 1317 |
| Mox20I | TGGCCA | 1 cut(s) | 1549 |
| Mph1103I | ATGCAT | 1 cut(s) | 362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 1549 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2054 |
| Msp20I | TGGCCA | 1 cut(s) | 1549 |
| MspCI | CTTAAG | 2 cut(s) | 1361, 1382 |
| MspI | CCGG | 8 cut(s) | 745, 945, 954, 1011, 1750, 1879, 1979, 2208 |
| MspR9I | CCNGG | 7 cut(s) | 538, 1530, 1773, 1879, 1980, 2208, 2209 |
| Mva1269I | GAATGC | 3 cut(s) | 360, 362, 1573 |
| MvaI | CCWGG | 3 cut(s) | 538, 1530, 1773 |
| MvnI | CGCG | 6 cut(s) | 824, 905, 976, 1079, 1084, 1916 |
| NarI | GGCGCC | 3 cut(s) | 764, 1102, 1888 |
| NciI | CCSGG | 4 cut(s) | 1879, 1980, 2208, 2209 |
| NdeII | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| NheI | GCTAGC | 1 cut(s) | 2161 |
| NlaIII | CATG | 9 cut(s) | 279, 392, 475, 500, 1300, 1409, 1438, 1480, 2189 |
| NlaIV | GGNNCC | 7 cut(s) | 162, 330, 765, 1103, 1190, 1322, 1889 |
| NmeAIII | GCCGAG | 1 cut(s) | 945 |
| NmuCI | GTSAC | 1 cut(s) | 1484 |
| NsiI | ATGCAT | 1 cut(s) | 362 |
| NspI | RCATGY | 6 cut(s) | 279, 475, 500, 1409, 1480, 2189 |
| NspV | TTCGAA | 1 cut(s) | 1803 |
| OliI | CACNNNNGTG | 1 cut(s) | 2054 |
| PaeI | GCATGC | 1 cut(s) | 1480 |
| PalAI | GGCGCGCC | 1 cut(s) | 1077 |
| PauI | GCGCGC | 1 cut(s) | 1077 |
| PceI | AGGCCT | 1 cut(s) | 1562 |
| PciI | ACATGT | 2 cut(s) | 471, 2185 |
| PctI | GAATGC | 3 cut(s) | 360, 362, 1573 |
| PdmI | GAANNNNTTC | 1 cut(s) | 360 |
| PfeI | GAWTC | 7 cut(s) | 149, 964, 1334, 1463, 1787, 1812, 1994 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1545, 1673 |
| PfoI | TCCNGGA | 1 cut(s) | 1771 |
| PkrI | GCNGC | 6 cut(s) | 468, 1083, 1218, 1458, 1504, 1748 |
| Ple19I | CGATCG | 1 cut(s) | 507 |
| PleI | GAGTC | 3 cut(s) | 1001, 1139, 1261 |
| PluTI | GGCGCC | 3 cut(s) | 767, 1105, 1891 |
| PpsI | GAGTC | 3 cut(s) | 1001, 1139, 1261 |
| PscI | ACATGT | 2 cut(s) | 471, 2185 |
| PshAI | GACNNNNGTC | 1 cut(s) | 664 |
| Psp124BI | GAGCTC | 1 cut(s) | 1286 |
| Psp6I | CCWGG | 3 cut(s) | 536, 1528, 1771 |
| PspFI | CCCAGC | 1 cut(s) | 593 |
| PspGI | CCWGG | 3 cut(s) | 536, 1528, 1771 |
| PspN4I | GGNNCC | 7 cut(s) | 162, 330, 765, 1103, 1190, 1322, 1889 |
| PspPI | GGNCC | 7 cut(s) | 328, 1013, 1127, 1230, 1320, 1976, 2220 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1954, 1986 |
| PteI | GCGCGC | 1 cut(s) | 1077 |
| PvuI | CGATCG | 1 cut(s) | 507 |
| RsaI | GTAC | 3 cut(s) | 700, 1388, 2076 |
| RsaNI | GTAC | 3 cut(s) | 699, 1387, 2075 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2054 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1230 |
| RsrII | CGGWCCG | 1 cut(s) | 1230 |
| SacI | GAGCTC | 1 cut(s) | 1286 |
| SalI | GTCGAC | 2 cut(s) | 667, 718 |
| SatI | GCNGC | 6 cut(s) | 467, 1082, 1217, 1457, 1503, 1747 |
| Sau3AI | GATC | 4 cut(s) | 504, 732, 1371, 1966 |
| Sau96I | GGNCC | 7 cut(s) | 328, 1013, 1127, 1230, 1320, 1976, 2220 |
| SchI | GAGTC | 3 cut(s) | 1001, 1139, 1262 |
| ScrFI | CCNGG | 7 cut(s) | 538, 1530, 1773, 1879, 1980, 2208, 2209 |
| SduI | GDGCHC | 2 cut(s) | 1286, 2051 |
| SfaNI | GCATC | 9 cut(s) | 36, 1143, 1572, 1587, 1602, 1617, 1632, 1890, 2148 |
| SfoI | GGCGCC | 3 cut(s) | 765, 1103, 1889 |
| SfuI | TTCGAA | 1 cut(s) | 1803 |
| SgsI | GGCGCGCC | 1 cut(s) | 1077 |
| SinI | GGWCC | 6 cut(s) | 328, 1127, 1230, 1320, 1976, 2220 |
| SmaI | CCCGGG | 1 cut(s) | 2209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2054 |
| SmlI | CTYRAG | 2 cut(s) | 1361, 1382 |
| SmoI | CTYRAG | 2 cut(s) | 1361, 1382 |
| SphI | GCATGC | 1 cut(s) | 1480 |
| SseBI | AGGCCT | 1 cut(s) | 1562 |
| SspDI | GGCGCC | 3 cut(s) | 763, 1101, 1887 |
| SspMI | CTAG | 3 cut(s) | 1185, 1656, 2162 |
| SstI | GAGCTC | 1 cut(s) | 1286 |
| StuI | AGGCCT | 1 cut(s) | 1562 |
| StyD4I | CCNGG | 7 cut(s) | 536, 1528, 1771, 1877, 1978, 2206, 2207 |
| StyI | CCWWGG | 4 cut(s) | 117, 1667, 1852, 2166 |
| TaaI | ACNGT | 5 cut(s) | 512, 703, 1127, 1230, 1490 |
| TaiI | ACGT | 2 cut(s) | 1098, 1742 |
| TaqII | GACCGA | 1 cut(s) | 1308 |
| TatI | WGTACW | 1 cut(s) | 2074 |
| TauI | GCSGC | 2 cut(s) | 1084, 1505 |
| TfiI | GAWTC | 7 cut(s) | 149, 964, 1334, 1463, 1787, 1812, 1994 |
| TscAI | CASTG | 3 cut(s) | 974, 1280, 1707 |
| TseFI | GTSAC | 1 cut(s) | 1484 |
| TseI | GCWGC | 4 cut(s) | 466, 1216, 1456, 1746 |
| Tsp45I | GTSAC | 1 cut(s) | 1484 |
| TspDTI | ATGAA | 6 cut(s) | 476, 1451, 2145, 2154, 2164, 2166 |
| TspGWI | ACGGA | 1 cut(s) | 1138 |
| TspMI | CCCGGG | 1 cut(s) | 2207 |
| TspRI | CASTG | 3 cut(s) | 974, 1280, 1707 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1545, 1673 |
| Vha464I | CTTAAG | 2 cut(s) | 1361, 1382 |
| VpaK11BI | GGWCC | 6 cut(s) | 328, 1127, 1230, 1320, 1976, 2220 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1134 |
| XbaI | TCTAGA | 1 cut(s) | 1655 |
| XceI | RCATGY | 6 cut(s) | 279, 475, 500, 1409, 1480, 2189 |
| XmaI | CCCGGG | 1 cut(s) | 2207 |
| XmiI | GTMKAC | 2 cut(s) | 668, 719 |
| XmnI | GAANNNNTTC | 1 cut(s) | 360 |
| XspI | CTAG | 3 cut(s) | 1185, 1656, 2162 |
| Zsp2I | ATGCAT | 1 cut(s) | 362 |