pycom05g14090

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000120
Physical Location & Seq
Reverse (-)
17613341 .. 17614571
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14090.1

Sequence Viewer

Length: 1101 bp
ATGTGGTGGGAACCTCAACATGTTCAAGAAGAAGGATATTGGCAGCCATATGAGGAGTTCTATTCAAGACCTATACACCCACCACAACCTCATATTCAATATGCCCAACCAAATTTAAGTTCGTCAATAGATTATAATCAAAAGCTTAACGAGTTAATTTGTTTGGTGCAGGGCTCACAAAATCAAGACAATGAGGCTCGACAAGAAGACAAAAGGTTGGACCACTTGGACAAGCAAATTGGGCAGATAGCGGAGTTCGTAGGACAATTTTGCGACCAAGGCAAACTCCCTAGTTCAACCATTGTAAATCCGAAGGGAGGATTTGAAGCACCTTTGTCAGAAGCACTTATTGCTCCTACGCCATCTAATTCAAGTAAGGTTGTTCCAATTAGTTCTAACCCCATTCCAACAAATATCCCTATTCCTTGCAGGTTCATGAATTCCAAGGAAGAAGAAAGTGAAAAAGACATCTTGGAAGCCCTTCCAAAGGTGCAAAGTAGGGAATGTCATGAATTCATCAAAGAGGACGTTCTTGAAACCACAAAATCCAAAGAAGTTAAATTTGATGACATTGGACAAGTCATAACCATCACTTGCAATCTGGCCAAGTCCAATATCCCTGAAACTTTCAAAGGAGTGGTGTTTGTCATTGAGTTCTTGTCGGACAAAACAAGTAAGTTTTTTTTTTCAAATTCCATTACATTTTATACTAACTTGCTGTTTTTTATGAATCAGGCACCTACACTAGAATTCAAACCAATGCCGTTTGATTTAATTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTATTAAACATGGAGAAAGATGGAGCTTCACAAAGGTTGTTTACGTGAAGCCCCACTACGAGGCGTCGAAGCGGAAGCGGAAGGCATCGGAGCTAGAGCATTCCAGGCCTCAATACTTGGCCAAGCGCTGGATGACCCAGGAAAAAGGTGCCTCTGGAGATAAGACGCAAGCCTTTGACGGTCACTGTGAATTCGACCCTCAGATTCTTGCAGCTCATCAAGCTTCCTCTTCATCCCCGACGAATAGTTATTTGCAAGCACATGCAAACTTCTATTCTCGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

367

Amino Acids

42.15

Weight (kDa)

8.33

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 135, 780
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 2 cut(s) 736, 962
AccB7I CCANNNNNTGG 1 cut(s) 942
AciI CCGC 3 cut(s) 251, 886, 892
AcoI YGGCCR 2 cut(s) 603, 933
AcsI RAATTY 7 cut(s) 112, 439, 512, 560, 691, 749, 1004
AcyI GRCGYC 1 cut(s) 878
AfaI GTAC 1 cut(s) 1096
AfeI AGCGCT 1 cut(s) 941
AfiI CCNNNNNNNGG 4 cut(s) 317, 487, 874, 942
AflIII ACRYGT 1 cut(s) 19
AjnI CCWGG 2 cut(s) 917, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 5 cut(s) 145, 840, 907, 1028, 1037
AluI AGCT 5 cut(s) 145, 840, 907, 1028, 1037
Aor51HI AGCGCT 1 cut(s) 941
AoxI GGCC 3 cut(s) 603, 920, 933
ApeKI GCWGC 2 cut(s) 43, 1025
ApoI RAATTY 7 cut(s) 112, 439, 512, 560, 691, 749, 1004
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 942
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 2 cut(s) 605, 935
BanI GGYRCC 2 cut(s) 736, 962
BanII GRGCYC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 854, 886
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 55, 1037
BccI CCATC 3 cut(s) 370, 596, 828
BceAI ACGGC 1 cut(s) 748
BciT130I CCWGG 2 cut(s) 919, 953
BfaI CTAG 3 cut(s) 291, 746, 908
BfoI RGCGCY 1 cut(s) 943
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 2 cut(s) 44, 1026
BlsI GCNGC 2 cut(s) 45, 1027
Bme1390I CCNGG 2 cut(s) 919, 953
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 12, 738, 964
BmrFI CCNGG 2 cut(s) 919, 953
BmsI GCATC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 990
BsaAI YACGTR 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 878
BsaJI CCNNGG 3 cut(s) 277, 444, 951
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 487, 874, 942
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 2 cut(s) 919, 953
BseDI CCNNGG 3 cut(s) 277, 444, 951
BseGI GGATG 2 cut(s) 951, 1046
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 4 cut(s) 317, 487, 874, 942
BseMII CTCAG 1 cut(s) 1028
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 55, 1037
BsgI GTGCAG 1 cut(s) 188
BshFI GGCC 3 cut(s) 605, 922, 935
BshNI GGYRCC 2 cut(s) 736, 962
BslI CCNNNNNNNGG 4 cut(s) 317, 487, 874, 942
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 3 cut(s) 605, 922, 935
Bsp1286I GDGCHC 1 cut(s) 176
BspACI CCGC 3 cut(s) 251, 886, 892
BspANI GGCC 3 cut(s) 605, 922, 935
BspCNI CTCAG 1 cut(s) 1027
BspHI TCATGA 2 cut(s) 435, 508
BspLI GGNNCC 3 cut(s) 12, 738, 964
BspMI ACCTGC 1 cut(s) 420
BspT107I GGYRCC 2 cut(s) 736, 962
BssECI CCNNGG 3 cut(s) 277, 444, 951
BssNI GRCGYC 1 cut(s) 878
BssT1I CCWWGG 2 cut(s) 277, 444
Bst2UI CCWGG 2 cut(s) 919, 953
Bst4CI ACNGT 2 cut(s) 995, 1001
Bst6I CTCTTC 1 cut(s) 1048
BstACI GRCGYC 1 cut(s) 878
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 2 cut(s) 984, 1071
BstDEI CTNAG 1 cut(s) 1014
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 951, 1046
BstH2I RGCGCY 1 cut(s) 943
BstHHI GCGC 1 cut(s) 942
BstMWI GCNNNNNNNGC 5 cut(s) 241, 279, 350, 919, 1034
BstNI CCWGG 2 cut(s) 919, 953
BstNSI RCATGY 2 cut(s) 23, 1079
BstSCI CCNGG 2 cut(s) 917, 951
BstV1I GCAGC 2 cut(s) 55, 1037
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 605, 922, 935
BtsCI GGATG 2 cut(s) 951, 1046
BtsIMutI CAGTG 1 cut(s) 997
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 984, 1071
CciI TCATGA 2 cut(s) 435, 508
CfoI GCGC 1 cut(s) 942
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 2 cut(s) 867, 988
Csp6I GTAC 1 cut(s) 1095
CviAII CATG 5 cut(s) 20, 436, 509, 824, 1076
CviQI GTAC 1 cut(s) 1095
DdeI CTNAG 1 cut(s) 1014
EaeI YGGCCR 2 cut(s) 603, 933
Eam1104I CTCTTC 1 cut(s) 1048
EarI CTCTTC 1 cut(s) 1048
Eco130I CCWWGG 2 cut(s) 277, 444
Eco147I AGGCCT 1 cut(s) 922
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 941
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoRI GAATTC 4 cut(s) 439, 512, 749, 1004
EcoRII CCWGG 2 cut(s) 917, 951
EcoT14I CCWWGG 2 cut(s) 277, 444
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 2 cut(s) 277, 444
FaeI CATG 5 cut(s) 23, 439, 512, 827, 1079
FatI CATG 5 cut(s) 19, 435, 508, 823, 1075
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 44, 1026
FokI GGATG 2 cut(s) 958, 1033
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 44, 1026
FspBI CTAG 3 cut(s) 291, 746, 908
GlaI GCGC 1 cut(s) 941
GluI GCNGC 2 cut(s) 44, 1026
GsuI CTGGAG 1 cut(s) 990
HaeII RGCGCY 1 cut(s) 943
HaeIII GGCC 3 cut(s) 605, 922, 935
HgaI GACGC 2 cut(s) 867, 988
HhaI GCGC 1 cut(s) 942
Hin1I GRCGYC 1 cut(s) 878
Hin1II CATG 5 cut(s) 23, 439, 512, 827, 1079
Hin6I GCGC 1 cut(s) 940
HinP1I GCGC 1 cut(s) 940
HindIII AAGCTT 2 cut(s) 143, 1035
HinfI GANTC 2 cut(s) 730, 1018
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 5 cut(s) 312, 340, 664, 904, 1017
Hpy188III TCNNGA 7 cut(s) 26, 66, 185, 436, 509, 533, 969
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 2 cut(s) 883, 1057
HpyAV CCTTC 4 cut(s) 26, 307, 491, 889
HpyCH4III ACNGT 2 cut(s) 995, 1001
HpyCH4IV ACGT 2 cut(s) 528, 858
HpyCH4V TGCA 7 cut(s) 169, 429, 493, 597, 1025, 1069, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 279, 350, 919, 1034
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 2 cut(s) 528, 858
Hsp92I GRCGYC 1 cut(s) 878
Hsp92II CATG 5 cut(s) 23, 439, 512, 827, 1079
HspAI GCGC 1 cut(s) 940
LmnI GCTCC 3 cut(s) 358, 837, 904
Lsp1109I GCAGC 2 cut(s) 55, 1037
LweI GCATC 1 cut(s) 908
MaeI CTAG 3 cut(s) 291, 746, 908
MaeII ACGT 2 cut(s) 528, 858
MaeIII GTNAC 1 cut(s) 995
MboII GAAGA 5 cut(s) 41, 218, 461, 464, 1035
MhlI GDGCHC 1 cut(s) 176
MlsI TGGCCA 2 cut(s) 605, 935
MluNI TGGCCA 2 cut(s) 605, 935
MmeI TCCRAC 3 cut(s) 198, 431, 642
Mox20I TGGCCA 2 cut(s) 605, 935
MroXI GAANNNNTTC 1 cut(s) 480
MscI TGGCCA 2 cut(s) 605, 935
MseI TTAA 7 cut(s) 116, 147, 155, 558, 773, 819, 1099
Msp20I TGGCCA 2 cut(s) 605, 935
MspR9I CCNGG 2 cut(s) 919, 953
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 2 cut(s) 919, 953
MwoI GCNNNNNNNGC 5 cut(s) 241, 279, 350, 919, 1034
NdeI CATATG 1 cut(s) 49
NlaIII CATG 5 cut(s) 23, 439, 512, 827, 1079
NlaIV GGNNCC 3 cut(s) 12, 738, 964
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 2 cut(s) 23, 1079
PagI TCATGA 2 cut(s) 435, 508
PceI AGGCCT 1 cut(s) 922
PciI ACATGT 1 cut(s) 19
PctI GAATGC 1 cut(s) 913
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 730, 1018
PflMI CCANNNNNTGG 1 cut(s) 942
PkrI GCNGC 2 cut(s) 45, 1027
Ppu21I YACGTR 1 cut(s) 859
PscI ACATGT 1 cut(s) 19
PsiI TTATAA 2 cut(s) 135, 780
Psp6I CCWGG 2 cut(s) 917, 951
PspGI CCWGG 2 cut(s) 917, 951
PspN4I GGNNCC 3 cut(s) 12, 738, 964
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 1096
RsaNI GTAC 1 cut(s) 1095
SaqAI TTAA 7 cut(s) 116, 147, 155, 558, 773, 819, 1099
SatI GCNGC 2 cut(s) 44, 1026
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 919, 953
SduI GDGCHC 1 cut(s) 176
SfaNI GCATC 1 cut(s) 908
SinI GGWCC 1 cut(s) 220
SseBI AGGCCT 1 cut(s) 922
SsiI CCGC 3 cut(s) 251, 886, 892
SspI AATATT 1 cut(s) 813
SspMI CTAG 3 cut(s) 291, 746, 908
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 2 cut(s) 917, 951
StyI CCWWGG 2 cut(s) 277, 444
TaaI ACNGT 2 cut(s) 995, 1001
TaiI ACGT 2 cut(s) 531, 861
TaqI TCGA 3 cut(s) 199, 881, 1008
TfiI GAWTC 2 cut(s) 730, 1018
Tru1I TTAA 7 cut(s) 116, 147, 155, 558, 773, 819, 1099
Tru9I TTAA 7 cut(s) 116, 147, 155, 558, 773, 819, 1099
TscAI CASTG 1 cut(s) 1004
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 2 cut(s) 43, 1025
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 6 cut(s) 424, 452, 505, 525, 743, 1035
TspRI CASTG 1 cut(s) 1004
Van91I CCANNNNNTGG 1 cut(s) 942
VpaK11BI GGWCC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 7 cut(s) 112, 439, 512, 560, 691, 749, 1004
XceI RCATGY 2 cut(s) 23, 1079
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 3 cut(s) 291, 746, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.