pycom13g28280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000120
Physical Location & Seq
Forward (+)
24186425 .. 24187905
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28280.5

Sequence Viewer

Length: 915 bp
ATGATCAACCTCTGGTGCCTCCTCTTTCTGGGGTTCTGCCCAGTACTGAGGCTCCAAATAATCACCCTCCGGTGCCTCCTATTTCTGGGACTTTGCCGAGTGTTGAGACTTCTCCTGAGTAGCCTTTGTGAAGGCGCCTTCCTGTTTGTTTGTTTTGATTCATGTAAGTTTTACTTCATTCAACGTGTTGTTTTTCATTTTGTTGAAGTTTACATGTTGAAACTTCGAAAACTTCTTGGTTGGGGACTTGAAAAATCCAAGGCACTGAGTAGTCGTGAAATTTCTGAGTACCAAGGTGTAGTGGTATATGGTAGGAGTCCCCCAAGTCTCCGGTCGAGGGAGGTATCTTTGGTTGCCCAAAACTCCTCCTTCATATATATTTGGTATGAAAGTTGTTTAGGCCCAAAGAAAGGAAGGCATAGGCTCATCTTTCTTTCTTTTGAATTTTCGAAAATGTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTGTGTTGAAGCTTTGTAACTTTGTAGGTGAAGTTTTTGTGTTGAAGCTTTGTAGGTCAAGCTTTTGTGTTGAAGCTTTCTTTGTAGATGAAGCTTTTGTGTTGAATGATTTTGCTTCACACTATCTTGATCGATCATCGGAAAATCGACGAAGCGTGTGTGAAGCTTTTGAGAATTGTAGTTGCTCTCCATTGATGAAGCTTTGTTTGATGTTGAAGCTTTCTTTTGTGTTGAAGCTTTGTTGGTGTGTGAAGCTTTTTGAGAATTGTTGTTGCTCTCCATTGATGAAGCTTTGTTTGAATTTCCCAATTTTTTTTTTTGAATTTTCGAAAATAGACAACATATACAAATTTTGCTTCCACACTATTAAGCAAGAGATTGTGATGCAAAAATTGAATTTGCTTCGAACAGTCTCGATCAAGAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

35.73

Weight (kDa)

9.02

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 15, 72, 134
AcsI RAATTY 6 cut(s) 279, 443, 784, 806, 833, 880
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 2 cut(s) 45, 290
AfiI CCNNNNNNNGG 4 cut(s) 28, 85, 337, 410
AflIII ACRYGT 2 cut(s) 184, 213
Alw26I GTCTC 3 cut(s) 100, 332, 901
AoxI GGCC 1 cut(s) 400
ApoI RAATTY 6 cut(s) 279, 443, 784, 806, 833, 880
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 55, 524
AsuII TTCGAA 4 cut(s) 226, 449, 812, 889
BanI GGYRCC 3 cut(s) 15, 72, 134
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 100, 332, 901
BfoI RGCGCY 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 4 cut(s) 17, 53, 74, 136
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 35
Bpu14I TTCGAA 4 cut(s) 226, 449, 812, 889
Bsa29I ATCGAT 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 258, 292
BsaWI WCCGGW 2 cut(s) 69, 330
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 85, 337, 410
Bse1I ACTGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 616
BseDI CCNNGG 2 cut(s) 258, 292
BseLI CCNNNNNNNGG 4 cut(s) 28, 85, 337, 410
BseMII CTCAG 4 cut(s) 38, 107, 257, 276
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 11, 355
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 402
BshNI GGYRCC 3 cut(s) 15, 72, 134
BshVI ATCGAT 1 cut(s) 616
BsiEI CGRYCG 1 cut(s) 335
BsiSI CCGG 2 cut(s) 70, 331
BslFI GGGAC 3 cut(s) 102, 258, 303
BslI CCNNNNNNNGG 4 cut(s) 28, 85, 337, 410
BsmAI GTCTC 3 cut(s) 100, 332, 901
BsmFI GGGAC 3 cut(s) 102, 258, 303
BsnI GGCC 1 cut(s) 402
Bsp119I TTCGAA 4 cut(s) 226, 449, 812, 889
Bsp143I GATC 4 cut(s) 3, 613, 617, 900
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 4 cut(s) 39, 108, 258, 277
BspDI ATCGAT 1 cut(s) 616
BspLI GGNNCC 4 cut(s) 17, 53, 74, 136
BspT104I TTCGAA 4 cut(s) 226, 449, 812, 889
BspT107I GGYRCC 3 cut(s) 15, 72, 134
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 258, 292
BssMI GATC 4 cut(s) 3, 613, 617, 900
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 258, 292
Bst4CI ACNGT 1 cut(s) 895
BstACI GRCGYC 1 cut(s) 135
BstBI TTCGAA 4 cut(s) 226, 449, 812, 889
BstDEI CTNAG 4 cut(s) 47, 116, 266, 285
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 4 cut(s) 6, 616, 620, 903
BstMAI GTCTC 3 cut(s) 100, 332, 901
BstMBI GATC 4 cut(s) 3, 613, 617, 900
BstMCI CGRYCG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 616
BsuRI GGCC 1 cut(s) 402
BsuTUI ATCGAT 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 263
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 616
Csp6I GTAC 2 cut(s) 44, 289
CviAII CATG 2 cut(s) 162, 214
CviQI GTAC 2 cut(s) 44, 289
DdeI CTNAG 4 cut(s) 47, 116, 266, 285
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 5, 615, 619, 902
DpnII GATC 4 cut(s) 3, 613, 617, 900
Eco130I CCWWGG 2 cut(s) 258, 292
EcoT14I CCWWGG 2 cut(s) 258, 292
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 258, 292
FaeI CATG 2 cut(s) 165, 217
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 3 cut(s) 102, 258, 303
FatI CATG 2 cut(s) 161, 213
FbaI TGATCA 1 cut(s) 3
GlaI GCGC 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 402
HapII CCGG 2 cut(s) 70, 331
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 165, 217
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 158, 316
HpaII CCGG 2 cut(s) 70, 331
HphI GGTGA 2 cut(s) 55, 524
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 286, 625
Hpy188III TCNNGA 5 cut(s) 115, 275, 611, 898, 904
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 4 cut(s) 125, 148, 379, 408
HpyCH4III ACNGT 1 cut(s) 895
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 871
HpyF3I CTNAG 4 cut(s) 47, 116, 266, 285
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 165, 217
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 613, 617, 900
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 14, 54, 71, 83, 128, 155, 344
LweI GCATC 1 cut(s) 858
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 500
MalI GATC 4 cut(s) 5, 615, 619, 902
MboI GATC 4 cut(s) 3, 613, 617, 900
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 9 cut(s) 20, 29, 32, 42, 77, 86, 330, 334, 376
MseI TTAA 1 cut(s) 852
MspI CCGG 2 cut(s) 70, 331
NarI GGCGCC 1 cut(s) 135
NdeII GATC 4 cut(s) 3, 613, 617, 900
NlaIII CATG 2 cut(s) 165, 217
NlaIV GGNNCC 4 cut(s) 17, 53, 74, 136
NmeAIII GCCGAG 1 cut(s) 122
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 4 cut(s) 226, 449, 812, 889
PciI ACATGT 1 cut(s) 213
PfeI GAWTC 1 cut(s) 158
PleI GAGTC 1 cut(s) 324
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 324
PscI ACATGT 1 cut(s) 213
PspN4I GGNNCC 4 cut(s) 17, 53, 74, 136
PspPI GGNCC 1 cut(s) 401
RsaI GTAC 2 cut(s) 45, 290
RsaNI GTAC 2 cut(s) 44, 289
SaqAI TTAA 1 cut(s) 852
Sau3AI GATC 4 cut(s) 3, 613, 617, 900
Sau96I GGNCC 1 cut(s) 401
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 1 cut(s) 325
SfaNI GCATC 1 cut(s) 858
SfoI GGCGCC 1 cut(s) 136
SfuI TTCGAA 4 cut(s) 226, 449, 812, 889
SspDI GGCGCC 1 cut(s) 134
StyI CCWWGG 2 cut(s) 258, 292
TaaI ACNGT 1 cut(s) 895
TaiI ACGT 1 cut(s) 187
TaqI TCGA 8 cut(s) 226, 335, 449, 616, 631, 812, 889, 899
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 1 cut(s) 270
TspDTI ATGAA 8 cut(s) 150, 166, 185, 361, 402, 588, 695, 785
TspRI CASTG 1 cut(s) 270
XapI RAATTY 6 cut(s) 279, 443, 784, 806, 833, 880
XceI RCATGY 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.