pycom2552g00010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002552
OG0000120
Physical Location & Seq
Forward (+)
3426 .. 15235
11810 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2552g00010.2

Sequence Viewer

Length: 438 bp
ATGCCGTTTGATTTTATTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGATACTAAACATGGAGAAAGGTGGAGCTTCACAAAGGTTGTTTGCGTGAAGCCCCACTACGAGGCGCAGAAGCGGAAGGAGGCTTTGAAGCAGAAGGCATCGGAGCGGAAGGCATTGGAGCGGAAGGCATCGGAGCGGAAGACACTCGAGCGGAAGGCATCGGAGCGGGAGGCATCGGAGCTAGAGCATTCCAGGCCTCAATACTTGGCCAAACGCTGGATGATCCAGGAAAAAGGTGCCTCTGGAGGAAAGACGAAAACATTTGACGGTCACTGTGAATCCGACCTTCAGACTCCTGCAGCTCATCAAGCTTCCTCTTCATGCCCGTCAAATAGTTGTTTGCAAGCACGTGCAAACTTCTATTCTCGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

10.09

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 279
AccBSI CCGCTC 5 cut(s) 169, 184, 199, 214, 229
AciI CCGC 6 cut(s) 136, 169, 184, 199, 214, 229
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 335
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 2 cut(s) 124, 279
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 254, 288
AluBI AGCT 4 cut(s) 90, 244, 365, 374
AluI AGCT 4 cut(s) 90, 244, 365, 374
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 257, 270
ApeKI GCWGC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 209
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 374
BciT130I CCWGG 2 cut(s) 256, 290
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 256, 290
BmeT110I CYCGRG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 256, 290
BmsI GCATC 4 cut(s) 170, 200, 230, 245
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 413
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 279
BseBI CCWGG 2 cut(s) 256, 290
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 124, 279
BseXI GCAGC 1 cut(s) 374
BshFI GGCC 2 cut(s) 259, 272
BshNI GGYRCC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 124, 279
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 2 cut(s) 259, 272
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 6 cut(s) 136, 169, 184, 199, 214, 229
BspANI GGCC 2 cut(s) 259, 272
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 299
BsrBI CCGCTC 5 cut(s) 169, 184, 199, 214, 229
BssMI GATC 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 256, 290
Bst4CI ACNGT 2 cut(s) 332, 338
Bst6I CTCTTC 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 408
BstF5I GGATG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 288
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 256, 371
BstNI CCWGG 2 cut(s) 256, 290
BstSCI CCNGG 2 cut(s) 254, 288
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 259, 272
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 432
CviAII CATG 2 cut(s) 74, 384
CviJI RGCY 8 cut(s) 90, 115, 146, 244, 259, 272, 365, 374
CviKI_1 RGCY 8 cut(s) 90, 115, 146, 244, 259, 272, 365, 374
CviQI GTAC 1 cut(s) 432
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 335
Eco72I CACGTG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 254, 288
FaeI CATG 2 cut(s) 77, 387
FaiI YATR 3 cut(s) 21, 75, 385
FatI CATG 2 cut(s) 73, 383
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 2 cut(s) 259, 272
HhaI GCGC 1 cut(s) 130
Hin1II CATG 2 cut(s) 77, 387
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 341, 355
Hpy188I TCNGA 6 cut(s) 166, 196, 226, 241, 346, 354
Hpy188III TCNNGA 1 cut(s) 306
HpyAV CCTTC 6 cut(s) 133, 151, 166, 181, 211, 359
HpyCH4III ACNGT 2 cut(s) 332, 338
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 3 cut(s) 362, 406, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 371
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 2 cut(s) 77, 387
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 1 cut(s) 285
LmnI GCTCC 6 cut(s) 87, 166, 181, 196, 226, 241
LpnPI CCDG 7 cut(s) 241, 265, 268, 275, 291, 302, 372
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 4 cut(s) 170, 200, 230, 245
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 287
MbiI CCGCTC 5 cut(s) 169, 184, 199, 214, 229
MboI GATC 1 cut(s) 285
MboII GAAGA 2 cut(s) 214, 372
MlsI TGGCCA 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 7 cut(s) 118, 136, 226, 270, 302, 313, 388
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 2 cut(s) 24, 436
Msp20I TGGCCA 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 256, 290
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 256, 290
MwoI GCNNNNNNNGC 2 cut(s) 256, 371
NdeII GATC 1 cut(s) 285
NlaIII CATG 2 cut(s) 77, 387
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 332
PaeR7I CTCGAG 1 cut(s) 209
PceI AGGCCT 1 cut(s) 259
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 254, 288
PspCI CACGTG 1 cut(s) 413
PspGI CCWGG 2 cut(s) 254, 288
PspN4I GGNNCC 1 cut(s) 301
PspXI VCTCGAGB 1 cut(s) 209
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 24, 436
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 1 cut(s) 285
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 256, 290
SetI ASST 9 cut(s) 86, 92, 102, 246, 301, 351, 367, 376, 415
SfaNI GCATC 4 cut(s) 170, 200, 230, 245
SfcI CTRYAG 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 6 cut(s) 136, 169, 184, 199, 214, 229
SspMI CTAG 1 cut(s) 245
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 254, 288
TaaI ACNGT 2 cut(s) 332, 338
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 210
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 24, 436
Tru9I TTAA 2 cut(s) 24, 436
TscAI CASTG 1 cut(s) 341
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.