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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1512 |
| Acc36I | ACCTGC | 3 cut(s) | 29, 1723, 1869 |
| AccB1I | GGYRCC | 2 cut(s) | 2065, 2088 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 991 |
| AccII | CGCG | 3 cut(s) | 130, 822, 1645 |
| AciI | CCGC | 4 cut(s) | 45, 128, 1459, 2306 |
| AclWI | GGATC | 3 cut(s) | 57, 437, 771 |
| AcsI | RAATTY | 6 cut(s) | 1331, 1589, 2022, 2287, 2316, 2398 |
| AcvI | CACGTG | 2 cut(s) | 816, 1940 |
| AcyI | GRCGYC | 1 cut(s) | 1477 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 54, 541, 910, 911, 927, 991, 1005, 1655, 1893 |
| AflIII | ACRYGT | 4 cut(s) | 256, 813, 815, 1939 |
| AgsI | TTSAA | 7 cut(s) | 265, 349, 1084, 1310, 1967, 2238, 2365 |
| AjnI | CCWGG | 4 cut(s) | 204, 1026, 1360, 1886 |
| Alw21I | GWGCWC | 9 cut(s) | 15, 43, 79, 179, 494, 568, 1545, 1962, 2353 |
| Alw26I | GTCTC | 3 cut(s) | 532, 805, 2419 |
| Alw44I | GTGCAC | 1 cut(s) | 75 |
| AlwI | GGATC | 3 cut(s) | 57, 437, 771 |
| Ama87I | CYCGRG | 2 cut(s) | 904, 1624 |
| AoxI | GGCC | 3 cut(s) | 532, 832, 2231 |
| ApaLI | GTGCAC | 1 cut(s) | 75 |
| ApeKI | GCWGC | 1 cut(s) | 371 |
| ApoI | RAATTY | 6 cut(s) | 1331, 1589, 2022, 2287, 2316, 2398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1589 |
| AspA2I | CCTAGG | 1 cut(s) | 2296 |
| AspLEI | GCGC | 1 cut(s) | 1513 |
| AspS9I | GGNCC | 3 cut(s) | 524, 1532, 2231 |
| AsuC2I | CCSGG | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 6 cut(s) | 130, 134, 424, 664, 939, 1247 |
| AvaI | CYCGRG | 2 cut(s) | 904, 1624 |
| AvaII | GGWCC | 2 cut(s) | 524, 1532 |
| AvrII | CCTAGG | 1 cut(s) | 2296 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1237, 1270 |
| BanI | GGYRCC | 2 cut(s) | 2065, 2088 |
| BanII | GRGCYC | 3 cut(s) | 15, 179, 568 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 448, 480, 1004, 1036 |
| BauI | CACGAG | 1 cut(s) | 386 |
| BbrPI | CACGTG | 2 cut(s) | 816, 1940 |
| BbsI | GAAGAC | 1 cut(s) | 138 |
| Bbv12I | GWGCWC | 9 cut(s) | 15, 43, 79, 179, 494, 568, 1545, 1962, 2353 |
| BbvI | GCAGC | 1 cut(s) | 383 |
| BccI | CCATC | 1 cut(s) | 790 |
| BceAI | ACGGC | 2 cut(s) | 174, 326 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1615, 1642, 1649, 1676 |
| BciT130I | CCWGG | 4 cut(s) | 206, 1028, 1362, 1888 |
| BciVI | GTATCC | 1 cut(s) | 1994 |
| BcnI | CCSGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 3 cut(s) | 532, 805, 2419 |
| BfmI | CTRYAG | 2 cut(s) | 100, 1730 |
| BfuAI | ACCTGC | 3 cut(s) | 29, 1723, 1869 |
| BfuI | GTATCC | 1 cut(s) | 1994 |
| BisI | GCNGC | 1 cut(s) | 372 |
| BlnI | CCTAGG | 1 cut(s) | 2296 |
| BlsI | GCNGC | 1 cut(s) | 373 |
| BmcAI | AGTACT | 2 cut(s) | 1013, 1622 |
| Bme1390I | CCNGG | 5 cut(s) | 30, 206, 1028, 1362, 1888 |
| Bme18I | GGWCC | 2 cut(s) | 524, 1532 |
| BmeT110I | CYCGRG | 2 cut(s) | 904, 1624 |
| BmgT120I | GGNCC | 3 cut(s) | 524, 1532, 2231 |
| BmiI | GGNNCC | 8 cut(s) | 110, 525, 1163, 1463, 1534, 1700, 2067, 2090 |
| BmrFI | CCNGG | 5 cut(s) | 30, 206, 1028, 1362, 1888 |
| BmrI | ACTGGG | 1 cut(s) | 136 |
| BmsI | GCATC | 3 cut(s) | 67, 564, 1405 |
| BmuI | ACTGGG | 1 cut(s) | 136 |
| BoxI | GACNNNNGTC | 1 cut(s) | 816 |
| BpiI | GAAGAC | 1 cut(s) | 138 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 692, 724, 785, 817, 902, 934 |
| BpmI | CTGGAG | 1 cut(s) | 1383 |
| BpuMI | CCSGG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 3 cut(s) | 61, 775, 943 |
| BsaAI | YACGTR | 2 cut(s) | 816, 1940 |
| BsaHI | GRCGYC | 1 cut(s) | 1477 |
| BsaI | GGTCTC | 1 cut(s) | 805 |
| BsaJI | CCNNGG | 3 cut(s) | 28, 205, 2296 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 837, 867, 1219, 1249, 1356, 1386 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 54, 541, 910, 911, 927, 991, 1005, 1655, 1893 |
| Bse118I | RCCGGY | 1 cut(s) | 2329 |
| Bse1I | ACTGG | 2 cut(s) | 142, 556 |
| Bse3DI | GCAATG | 1 cut(s) | 1638 |
| BseBI | CCWGG | 4 cut(s) | 206, 1028, 1362, 1888 |
| BseCI | ATCGAT | 3 cut(s) | 61, 775, 943 |
| BseDI | CCNNGG | 3 cut(s) | 28, 205, 2296 |
| BseGI | GGATG | 5 cut(s) | 1023, 1275, 1621, 1845, 1905 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 54, 541, 910, 911, 927, 991, 1005, 1655, 1893 |
| BseMI | GCAATG | 1 cut(s) | 1638 |
| BseMII | CTCAG | 5 cut(s) | 936, 1551, 1562, 2148, 2414 |
| BseNI | ACTGG | 2 cut(s) | 142, 556 |
| BseRI | GAGGAG | 2 cut(s) | 716, 910 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 1 cut(s) | 383 |
| BsgI | GTGCAG | 2 cut(s) | 7, 458 |
| Bsh1236I | CGCG | 3 cut(s) | 130, 822, 1645 |
| BshFI | GGCC | 3 cut(s) | 534, 834, 2233 |
| BshNI | GGYRCC | 2 cut(s) | 2065, 2088 |
| BshVI | ATCGAT | 3 cut(s) | 61, 775, 943 |
| BsiHKAI | GWGCWC | 9 cut(s) | 15, 43, 79, 179, 494, 568, 1545, 1962, 2353 |
| BsiHKCI | CYCGRG | 2 cut(s) | 904, 1624 |
| BsiSI | CCGG | 2 cut(s) | 30, 2330 |
| BslFI | GGGAC | 4 cut(s) | 944, 1125, 1518, 1911 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 54, 541, 910, 911, 927, 991, 1005, 1655, 1893 |
| BsmAI | GTCTC | 3 cut(s) | 532, 805, 2419 |
| BsmFI | GGGAC | 4 cut(s) | 944, 1125, 1518, 1911 |
| BsmI | GAATGC | 2 cut(s) | 232, 1712 |
| BsnI | GGCC | 3 cut(s) | 534, 834, 2233 |
| Bso31I | GGTCTC | 1 cut(s) | 805 |
| BsoBI | CYCGRG | 2 cut(s) | 904, 1624 |
| Bsp1286I | GDGCHC | 9 cut(s) | 15, 43, 79, 179, 494, 568, 1545, 1962, 2353 |
| Bsp1407I | TGTACA | 2 cut(s) | 89, 662 |
| BspACI | CCGC | 4 cut(s) | 45, 128, 1459, 2306 |
| BspANI | GGCC | 3 cut(s) | 534, 834, 2233 |
| BspCNI | CTCAG | 5 cut(s) | 935, 1550, 1563, 2147, 2415 |
| BspDI | ATCGAT | 3 cut(s) | 61, 775, 943 |
| BspFNI | CGCG | 3 cut(s) | 130, 822, 1645 |
| BspHI | TCATGA | 1 cut(s) | 1593 |
| BspLI | GGNNCC | 8 cut(s) | 110, 525, 1163, 1463, 1534, 1700, 2067, 2090 |
| BspMAI | CTGCAG | 1 cut(s) | 1734 |
| BspMI | ACCTGC | 3 cut(s) | 29, 1723, 1869 |
| BspPI | GGATC | 3 cut(s) | 57, 437, 771 |
| BspQI | GCTCTTC | 1 cut(s) | 556 |
| BspT107I | GGYRCC | 2 cut(s) | 2065, 2088 |
| BspTNI | GGTCTC | 1 cut(s) | 805 |
| BsrDI | GCAATG | 1 cut(s) | 1638 |
| BsrFI | RCCGGY | 1 cut(s) | 2329 |
| BsrGI | TGTACA | 2 cut(s) | 89, 662 |
| BsrI | ACTGG | 2 cut(s) | 142, 556 |
| BssAI | RCCGGY | 1 cut(s) | 2329 |
| BssECI | CCNNGG | 3 cut(s) | 28, 205, 2296 |
| BssNI | GRCGYC | 1 cut(s) | 1477 |
| BssSI | CACGAG | 1 cut(s) | 386 |
| BssT1I | CCWWGG | 1 cut(s) | 2296 |
| Bst2BI | CACGAG | 1 cut(s) | 386 |
| Bst2UI | CCWGG | 4 cut(s) | 206, 1028, 1362, 1888 |
| Bst4CI | ACNGT | 7 cut(s) | 81, 219, 400, 1567, 1609, 1934, 2088 |
| Bst6I | CTCTTC | 5 cut(s) | 556, 786, 1447, 2076, 2099 |
| BstACI | GRCGYC | 1 cut(s) | 1477 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1519 |
| BstAUI | TGTACA | 2 cut(s) | 89, 662 |
| BstBAI | YACGTR | 2 cut(s) | 816, 1940 |
| BstC8I | GCNNGC | 3 cut(s) | 1643, 2110, 2331 |
| BstDEI | CTNAG | 9 cut(s) | 478, 897, 922, 1178, 1435, 1537, 1571, 2134, 2423 |
| BstEII | GGTNACC | 1 cut(s) | 122 |
| BstF5I | GGATG | 5 cut(s) | 1023, 1275, 1621, 1845, 1905 |
| BstFNI | CGCG | 3 cut(s) | 130, 822, 1645 |
| BstHHI | GCGC | 1 cut(s) | 1513 |
| BstMAI | GTCTC | 3 cut(s) | 532, 805, 2419 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 10, 489, 1519, 1642, 2000 |
| BstNI | CCWGG | 4 cut(s) | 206, 1028, 1362, 1888 |
| BstNSI | RCATGY | 2 cut(s) | 260, 1285 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 816 |
| BstPI | GGTNACC | 1 cut(s) | 122 |
| BstSCI | CCNGG | 5 cut(s) | 28, 204, 1026, 1360, 1886 |
| BstSFI | CTRYAG | 2 cut(s) | 100, 1730 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstUI | CGCG | 3 cut(s) | 130, 822, 1645 |
| BstV1I | GCAGC | 1 cut(s) | 383 |
| BstV2I | GAAGAC | 1 cut(s) | 138 |
| Bsu15I | ATCGAT | 3 cut(s) | 61, 775, 943 |
| BsuI | GTATCC | 1 cut(s) | 1994 |
| BsuRI | GGCC | 3 cut(s) | 534, 834, 2233 |
| BsuTUI | ATCGAT | 3 cut(s) | 61, 775, 943 |
| BtsCI | GGATG | 5 cut(s) | 1023, 1275, 1621, 1845, 1905 |
| BtsI | GCAGTG | 1 cut(s) | 2192 |
| BtsIMutI | CAGTG | 1 cut(s) | 2192 |
| BveI | ACCTGC | 3 cut(s) | 29, 1723, 1869 |
| Cac8I | GCNNGC | 3 cut(s) | 1643, 2110, 2331 |
| CciI | TCATGA | 1 cut(s) | 1593 |
| CfoI | GCGC | 1 cut(s) | 1513 |
| Cfr10I | RCCGGY | 1 cut(s) | 2329 |
| Cfr13I | GGNCC | 3 cut(s) | 524, 1532, 2231 |
| ClaI | ATCGAT | 3 cut(s) | 61, 775, 943 |
| CseI | GACGC | 1 cut(s) | 1466 |
| CviAII | CATG | 8 cut(s) | 150, 240, 257, 666, 1282, 1481, 1594, 1774 |
| DdeI | CTNAG | 9 cut(s) | 478, 897, 922, 1178, 1435, 1537, 1571, 2134, 2423 |
| DraI | TTTAAA | 1 cut(s) | 1527 |
| Eam1104I | CTCTTC | 5 cut(s) | 556, 786, 1447, 2076, 2099 |
| EarI | CTCTTC | 5 cut(s) | 556, 786, 1447, 2076, 2099 |
| Ecl136II | GAGCTC | 3 cut(s) | 13, 177, 566 |
| Eco130I | CCWWGG | 1 cut(s) | 2296 |
| Eco24I | GRGCYC | 3 cut(s) | 15, 179, 568 |
| Eco31I | GGTCTC | 1 cut(s) | 805 |
| Eco47I | GGWCC | 2 cut(s) | 524, 1532 |
| Eco53kI | GAGCTC | 3 cut(s) | 13, 177, 566 |
| Eco72I | CACGTG | 2 cut(s) | 816, 1940 |
| Eco88I | CYCGRG | 2 cut(s) | 904, 1624 |
| Eco91I | GGTNACC | 1 cut(s) | 122 |
| EcoICRI | GAGCTC | 3 cut(s) | 13, 177, 566 |
| EcoO109I | RGGNCCY | 1 cut(s) | 524 |
| EcoO65I | GGTNACC | 1 cut(s) | 122 |
| EcoRI | GAATTC | 1 cut(s) | 1589 |
| EcoRII | CCWGG | 4 cut(s) | 204, 1026, 1360, 1886 |
| EcoT14I | CCWWGG | 1 cut(s) | 2296 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 3 cut(s) | 15, 179, 568 |
| ErhI | CCWWGG | 1 cut(s) | 2296 |
| FaeI | CATG | 8 cut(s) | 153, 243, 260, 669, 1285, 1484, 1597, 1777 |
| FaqI | GGGAC | 4 cut(s) | 944, 1125, 1518, 1911 |
| FatI | CATG | 8 cut(s) | 149, 239, 256, 665, 1281, 1480, 1593, 1773 |
| FauI | CCCGC | 2 cut(s) | 52, 135 |
| Fnu4HI | GCNGC | 1 cut(s) | 372 |
| FokI | GGATG | 5 cut(s) | 1010, 1282, 1628, 1852, 1912 |
| FriOI | GRGCYC | 3 cut(s) | 15, 179, 568 |
| Fsp4HI | GCNGC | 1 cut(s) | 372 |
| FspI | TGCGCA | 1 cut(s) | 1512 |
| GlaI | GCGC | 1 cut(s) | 1512 |
| GluI | GCNGC | 1 cut(s) | 372 |
| GsuI | CTGGAG | 1 cut(s) | 1383 |
| HaeIII | GGCC | 3 cut(s) | 534, 834, 2233 |
| HapII | CCGG | 2 cut(s) | 30, 2330 |
| HgaI | GACGC | 1 cut(s) | 1466 |
| HhaI | GCGC | 1 cut(s) | 1513 |
| Hin1I | GRCGYC | 1 cut(s) | 1477 |
| Hin1II | CATG | 8 cut(s) | 153, 243, 260, 669, 1285, 1484, 1597, 1777 |
| Hin6I | GCGC | 1 cut(s) | 1511 |
| HinP1I | GCGC | 1 cut(s) | 1511 |
| HincII | GTYRAC | 3 cut(s) | 1053, 1909, 2155 |
| HindII | GTYRAC | 3 cut(s) | 1053, 1909, 2155 |
| HindIII | AAGCTT | 3 cut(s) | 352, 1085, 1390 |
| HinfI | GANTC | 9 cut(s) | 114, 183, 724, 1138, 1273, 1324, 1439, 1747, 2369 |
| HpaII | CCGG | 2 cut(s) | 30, 2330 |
| HphI | GGTGA | 6 cut(s) | 130, 134, 424, 664, 939, 1247 |
| HpyAV | CCTTC | 9 cut(s) | 637, 1009, 1030, 1316, 1579, 1781, 1842, 1897, 2244 |
| HpyCH4III | ACNGT | 7 cut(s) | 81, 219, 400, 1567, 1609, 1934, 2088 |
| HpyCH4IV | ACGT | 3 cut(s) | 687, 815, 1939 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 24, 77, 475, 577, 937, 1522, 1712, 1732 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 10, 489, 1519, 1642, 2000 |
| HpyF3I | CTNAG | 9 cut(s) | 478, 897, 922, 1178, 1435, 1537, 1571, 2134, 2423 |
| HpySE526I | ACGT | 3 cut(s) | 687, 815, 1939 |
| Hsp92I | GRCGYC | 1 cut(s) | 1477 |
| Hsp92II | CATG | 8 cut(s) | 153, 243, 260, 669, 1285, 1484, 1597, 1777 |
| HspAI | GCGC | 1 cut(s) | 1511 |
| KroI | GCCGGC | 1 cut(s) | 2329 |
| KroNI | GCCGGC | 1 cut(s) | 2331 |
| LguI | GCTCTTC | 1 cut(s) | 556 |
| LmnI | GCTCC | 3 cut(s) | 46, 923, 2348 |
| Lsp1109I | GCAGC | 1 cut(s) | 383 |
| LweI | GCATC | 3 cut(s) | 67, 564, 1405 |
| MaeII | ACGT | 3 cut(s) | 687, 815, 1939 |
| MaeIII | GTNAC | 4 cut(s) | 122, 197, 209, 622 |
| MhlI | GDGCHC | 9 cut(s) | 15, 43, 79, 179, 494, 568, 1545, 1962, 2353 |
| MlyI | GAGTC | 5 cut(s) | 108, 1147, 1318, 1433, 2378 |
| MmeI | TCCRAC | 5 cut(s) | 136, 823, 1726, 2065, 2101 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 2329 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1589 |
| MseI | TTAA | 6 cut(s) | 1526, 1553, 1946, 2253, 2292, 2358 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1527 |
| MspI | CCGG | 2 cut(s) | 30, 2330 |
| MspR9I | CCNGG | 5 cut(s) | 30, 206, 1028, 1362, 1888 |
| Mva1269I | GAATGC | 2 cut(s) | 232, 1712 |
| MvaI | CCWGG | 4 cut(s) | 206, 1028, 1362, 1888 |
| MvnI | CGCG | 3 cut(s) | 130, 822, 1645 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 10, 489, 1519, 1642, 2000 |
| NaeI | GCCGGC | 1 cut(s) | 2331 |
| NciI | CCSGG | 1 cut(s) | 30 |
| NgoMIV | GCCGGC | 1 cut(s) | 2329 |
| NlaIII | CATG | 8 cut(s) | 153, 243, 260, 669, 1285, 1484, 1597, 1777 |
| NlaIV | GGNNCC | 8 cut(s) | 110, 525, 1163, 1463, 1534, 1700, 2067, 2090 |
| NmeAIII | GCCGAG | 1 cut(s) | 1444 |
| NmuCI | GTSAC | 3 cut(s) | 122, 197, 622 |
| NsbI | TGCGCA | 1 cut(s) | 1512 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 260, 1285 |
| PaeR7I | CTCGAG | 1 cut(s) | 1624 |
| PagI | TCATGA | 1 cut(s) | 1593 |
| PciI | ACATGT | 1 cut(s) | 256 |
| PciSI | GCTCTTC | 1 cut(s) | 556 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1190, 1273 |
| PctI | GAATGC | 2 cut(s) | 232, 1712 |
| PdiI | GCCGGC | 1 cut(s) | 2331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1589 |
| PfeI | GAWTC | 4 cut(s) | 183, 724, 1273, 1747 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 991 |
| PfoI | TCCNGGA | 1 cut(s) | 1026 |
| PkrI | GCNGC | 1 cut(s) | 373 |
| PleI | GAGTC | 5 cut(s) | 108, 1146, 1318, 1433, 2377 |
| PmaCI | CACGTG | 2 cut(s) | 816, 1940 |
| PmlI | CACGTG | 2 cut(s) | 816, 1940 |
| PpsI | GAGTC | 5 cut(s) | 108, 1146, 1318, 1433, 2377 |
| Ppu21I | YACGTR | 2 cut(s) | 816, 1940 |
| PpuMI | RGGWCCY | 1 cut(s) | 524 |
| PscI | ACATGT | 1 cut(s) | 256 |
| PshAI | GACNNNNGTC | 1 cut(s) | 816 |
| Psp124BI | GAGCTC | 3 cut(s) | 15, 179, 568 |
| Psp5II | RGGWCCY | 1 cut(s) | 524 |
| Psp6I | CCWGG | 4 cut(s) | 204, 1026, 1360, 1886 |
| PspCI | CACGTG | 2 cut(s) | 816, 1940 |
| PspEI | GGTNACC | 1 cut(s) | 122 |
| PspGI | CCWGG | 4 cut(s) | 204, 1026, 1360, 1886 |
| PspN4I | GGNNCC | 8 cut(s) | 110, 525, 1163, 1463, 1534, 1700, 2067, 2090 |
| PspPI | GGNCC | 3 cut(s) | 524, 1532, 2231 |
| PspPPI | RGGWCCY | 1 cut(s) | 524 |
| PstI | CTGCAG | 1 cut(s) | 1734 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1527 |
| SacI | GAGCTC | 3 cut(s) | 15, 179, 568 |
| SapI | GCTCTTC | 1 cut(s) | 556 |
| SaqAI | TTAA | 6 cut(s) | 1526, 1553, 1946, 2253, 2292, 2358 |
| SatI | GCNGC | 1 cut(s) | 372 |
| Sau96I | GGNCC | 3 cut(s) | 524, 1532, 2231 |
| SbfI | CCTGCAGG | 1 cut(s) | 1734 |
| ScaI | AGTACT | 2 cut(s) | 1013, 1622 |
| SchI | GAGTC | 5 cut(s) | 108, 1147, 1318, 1433, 2378 |
| ScrFI | CCNGG | 5 cut(s) | 30, 206, 1028, 1362, 1888 |
| SdaI | CCTGCAGG | 1 cut(s) | 1734 |
| SduI | GDGCHC | 9 cut(s) | 15, 43, 79, 179, 494, 568, 1545, 1962, 2353 |
| SfaNI | GCATC | 3 cut(s) | 67, 564, 1405 |
| SfcI | CTRYAG | 2 cut(s) | 100, 1730 |
| Sfr274I | CTCGAG | 1 cut(s) | 1624 |
| SinI | GGWCC | 2 cut(s) | 524, 1532 |
| SlaI | CTCGAG | 1 cut(s) | 1624 |
| SmiI | ATTTAAAT | 1 cut(s) | 1527 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1527 |
| SmlI | CTYRAG | 1 cut(s) | 1624 |
| SmoI | CTYRAG | 1 cut(s) | 1624 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1734 |
| SsiI | CCGC | 4 cut(s) | 45, 128, 1459, 2306 |
| SstI | GAGCTC | 3 cut(s) | 15, 179, 568 |
| StyD4I | CCNGG | 5 cut(s) | 28, 204, 1026, 1360, 1886 |
| StyI | CCWWGG | 1 cut(s) | 2296 |
| SwaI | ATTTAAAT | 1 cut(s) | 1527 |
| TaaI | ACNGT | 7 cut(s) | 81, 219, 400, 1567, 1609, 1934, 2088 |
| TaiI | ACGT | 3 cut(s) | 690, 818, 1942 |
| TatI | WGTACW | 7 cut(s) | 89, 662, 742, 1011, 1486, 1620, 2434 |
| TfiI | GAWTC | 4 cut(s) | 183, 724, 1273, 1747 |
| Tru1I | TTAA | 6 cut(s) | 1526, 1553, 1946, 2253, 2292, 2358 |
| Tru9I | TTAA | 6 cut(s) | 1526, 1553, 1946, 2253, 2292, 2358 |
| TscAI | CASTG | 1 cut(s) | 2192 |
| TseFI | GTSAC | 3 cut(s) | 122, 197, 622 |
| TseI | GCWGC | 1 cut(s) | 371 |
| Tsp45I | GTSAC | 3 cut(s) | 122, 197, 622 |
| TspGWI | ACGGA | 5 cut(s) | 708, 1282, 1342, 1435, 2362 |
| TspRI | CASTG | 1 cut(s) | 2192 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 991 |
| VneI | GTGCAC | 1 cut(s) | 75 |
| VpaK11BI | GGWCC | 2 cut(s) | 524, 1532 |
| XapI | RAATTY | 6 cut(s) | 1331, 1589, 2022, 2287, 2316, 2398 |
| XbaI | TCTAGA | 3 cut(s) | 179, 1327, 1675 |
| XceI | RCATGY | 2 cut(s) | 260, 1285 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1839 |
| XhoI | CTCGAG | 1 cut(s) | 1624 |
| XmaJI | CCTAGG | 1 cut(s) | 2296 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1589 |
| ZrmI | AGTACT | 2 cut(s) | 1013, 1622 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |