Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Forward (+)

12783591 .. 12786862

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G095500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAGAGCAAAATTTGGTTGATGAATATCAGTGTGACATCAAAAGATTGAAAAAGAATAGGGCAAAGACAGCAGAGAAGAACCAACGCCAGCTTCAAATATTGCAGGAAGAAAACGAAAAGCTATCAAAGATGGTAGATTCTTATTCTAAAGGCATGCAAAAACAGCTGGAGGCCTTGGAGAACCCAAAGAAGCGCAAGCGAGATCACGAGACAAGTTTTGCTCAAGCTAAGAAAGTGATCTTTGGGAGCTCAAGTGATGAGCCCCAAGAAGTGCTAAATCGATGCAACAGTACATCATTACCAAGTCAAAGAAAAGCCTCAAAGCTTGATGGCAAGCTGTATTTTTCTAGTGGACTCTCTAAGAGCTCTACGCCTGATAGCAATCCAGACATATGTAAGGATTACAAAGACACTGGTTACTGTGGGTATGGAGATTCTTGCAAGTTTATGCATGATCGTGGAGACTACAAGTCTGGGTGGCAGATGGAAAGGGAACAGAGGAAGATGATGATGATGATGATGATGAGGATGGCTCGTTGCCATTTGCATGTTTCATCTGCCGGCAACCATTATCCTGTTGTGACTAAATGCAACCACTACTTCTGCGAGCACTGTACACTAAAGCATCATTCAAAGAACAAGAAGTGCTTTGTGTGCAACAAGCCTACTCTTGGCATATTCAGTACGGTTTATGAGATACGCAGAAGGATGGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

241

Amino Acids

27.87

Weight (kDa)

9.36

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	3 cut(s)	295, 619, 688
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgsI	TTSAA	3 cut(s)	52, 98, 636
AhdI	GACNNNNNGTC	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	8 cut(s)	94, 124, 169, 230, 252, 328, 340, 369
AluI	AGCT	8 cut(s)	94, 124, 169, 230, 252, 328, 340, 369
Alw21I	GWGCWC	3 cut(s)	254, 371, 615
Alw26I	GTCTC	2 cut(s)	206, 459
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	198
BanII	GRGCYC	3 cut(s)	254, 267, 371
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	3 cut(s)	254, 371, 615
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	5 cut(s)	127, 326, 481, 526, 706
BcoDI	GTCTC	2 cut(s)	206, 459
BfaI	CTAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmsI	GCATC	2 cut(s)	275, 637
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	210, 238
Bsa29I	ATCGAT	1 cut(s)	283
BsaBI	GATNNNNATC	2 cut(s)	27, 384
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	421
Bse8I	GATNNNNATC	2 cut(s)	27, 384
BseCI	ATCGAT	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	537, 717
BseJI	GATNNNNATC	2 cut(s)	27, 384
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	703
BshFI	GGCC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	254, 371, 615
BsiSI	CCGG	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	2 cut(s)	206, 459
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	4 cut(s)	254, 267, 371, 615
Bsp1407I	TGTACA	1 cut(s)	617
Bsp143I	GATC	3 cut(s)	205, 240, 457
BspANI	GGCC	1 cut(s)	176
BspDI	ATCGAT	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	205, 240, 457
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	293, 425, 617, 691
BstAUI	TGTACA	1 cut(s)	617
BstC8I	GCNNGC	6 cut(s)	92, 158, 200, 338, 565, 611
BstDEI	CTNAG	2 cut(s)	231, 363
BstF5I	GGATG	2 cut(s)	537, 717
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	3 cut(s)	208, 243, 460
BstMAI	GTCTC	2 cut(s)	206, 459
BstMBI	GATC	3 cut(s)	205, 240, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 166, 657
BstNSI	RCATGY	2 cut(s)	160, 554
BstV1I	GCAGC	1 cut(s)	703
Bsu15I	ATCGAT	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	537, 717
BtsIMutI	CAGTG	3 cut(s)	38, 414, 613
Cac8I	GCNNGC	6 cut(s)	92, 158, 200, 338, 565, 611
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	563
ClaI	ATCGAT	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	294, 618, 687
CviAII	CATG	3 cut(s)	157, 455, 551
CviQI	GTAC	3 cut(s)	294, 618, 687
DdeI	CTNAG	2 cut(s)	231, 363
DpnI	GATC	3 cut(s)	207, 242, 459
DpnII	GATC	3 cut(s)	205, 240, 457
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1105I	GACNNNNNGTC	1 cut(s)	472
Ecl136II	GAGCTC	2 cut(s)	252, 369
Eco130I	CCWWGG	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	176
Eco24I	GRGCYC	3 cut(s)	254, 267, 371
Eco53kI	GAGCTC	2 cut(s)	252, 369
EcoICRI	GAGCTC	2 cut(s)	252, 369
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	3 cut(s)	254, 267, 371
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	160, 458, 554
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FatI	CATG	3 cut(s)	156, 454, 550
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	3 cut(s)	254, 267, 371
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	564
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	160, 458, 554
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	140, 357, 437
HpaII	CCGG	1 cut(s)	564
Hpy166II	GTNNAC	2 cut(s)	356, 620
Hpy188III	TCNNGA	2 cut(s)	209, 389
Hpy8I	GTNNAC	2 cut(s)	356, 620
HpyAV	CCTTC	1 cut(s)	702
HpyCH4III	ACNGT	4 cut(s)	293, 425, 617, 691
HpyCH4V	TGCA	9 cut(s)	106, 160, 288, 444, 454, 550, 594, 660, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 166, 657
HpyF3I	CTNAG	2 cut(s)	231, 363
Hsp92II	CATG	3 cut(s)	160, 458, 554
HspAI	GCGC	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	205, 240, 457
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	9 cut(s)	92, 104, 155, 390, 402, 402, 462, 577, 591
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	2 cut(s)	275, 637
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	35, 419, 583
MalI	GATC	3 cut(s)	207, 242, 459
MboI	GATC	3 cut(s)	205, 240, 457
MboII	GAAGA	3 cut(s)	91, 122, 517
MhlI	GDGCHC	4 cut(s)	254, 267, 371, 615
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	166, 331, 495, 522
Mph1103I	ATGCAT	1 cut(s)	456
MroNI	GCCGGC	1 cut(s)	563
MslI	CAYNNNNRTG	2 cut(s)	459, 549
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	71, 166, 657
NaeI	GCCGGC	1 cut(s)	565
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	3 cut(s)	205, 240, 457
NgoMIV	GCCGGC	1 cut(s)	563
NlaIII	CATG	3 cut(s)	160, 458, 554
NmuCI	GTSAC	2 cut(s)	35, 583
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	160, 554
PaeI	GCATGC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	140, 437
PkrI	GCNGC	1 cut(s)	718
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
Psp124BI	GAGCTC	2 cut(s)	254, 371
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	3 cut(s)	295, 619, 688
RsaNI	GTAC	3 cut(s)	294, 618, 687
RseI	CAYNNNNRTG	2 cut(s)	459, 549
SacI	GAGCTC	2 cut(s)	254, 371
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	3 cut(s)	205, 240, 457
SchI	GAGTC	1 cut(s)	351
SduI	GDGCHC	4 cut(s)	254, 267, 371, 615
SetI	ASST	8 cut(s)	96, 126, 171, 232, 254, 330, 342, 371
SfaNI	GCATC	2 cut(s)	275, 637
SmiMI	CAYNNNNRTG	2 cut(s)	459, 549
SmlI	CTYRAG	2 cut(s)	225, 253
SmoI	CTYRAG	2 cut(s)	225, 253
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	1 cut(s)	13
SseBI	AGGCCT	1 cut(s)	176
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	2 cut(s)	254, 371
StuI	AGGCCT	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	293, 425, 617, 691
TaqI	TCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	13
TatI	WGTACW	2 cut(s)	293, 617
TfiI	GAWTC	2 cut(s)	140, 437
TscAI	CASTG	3 cut(s)	38, 421, 620
TseFI	GTSAC	2 cut(s)	35, 583
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	2 cut(s)	35, 583
TspDTI	ATGAA	2 cut(s)	39, 546
TspRI	CASTG	3 cut(s)	38, 421, 620
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	160, 554
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.