pycom05g06250

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
8253262 .. 8263889
10628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06250.2

Sequence Viewer

Length: 408 bp
ATGTCCATTGATCTCCGAGAAGTTACAAGTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAATTGTTTACAAAGGTTGTTTACGTGAAGCCCCACTACTTGCAGAAGGCATCGGGGCGGAAGGCATTGGGCCGGAAGGCATCGGAGCGGAAGGCATCGGGGCGGAAGGCATCGGAGCGGAAGGCATCGGAGCGGGAGGCATCGAAGATAGAGCATTCGAGGCCTCAATACTTGGCCAAACGCTGGACGAGCCAGGAAAAATGTGCCTCTGGAAGAAAGCCACAAGCCTTTGACGGTCACTTTGAATGCGACCATTGGATTCTTGCAGCTCATCAAGCTTCCTCTTCATACCCGTCGAATAGTTGTTTGCAAGCACATGCAAACTTCTATTCTCATACTTCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

10.05

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccBSI CCGCTC 3 cut(s) 145, 175, 190
AciI CCGC 5 cut(s) 115, 145, 160, 175, 190
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 326, 335, 401
AluI AGCT 3 cut(s) 326, 335, 401
AoxI GGCC 3 cut(s) 127, 218, 231
ApeKI GCWGC 2 cut(s) 323, 401
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 233
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
BbvI GCAGC 2 cut(s) 335, 388
BciT130I CCWGG 1 cut(s) 251
BisI GCNGC 2 cut(s) 324, 402
BlsI GCNGC 2 cut(s) 325, 403
Bme1390I CCNGG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 6 cut(s) 116, 146, 161, 176, 191, 206
BsaAI YACGTR 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 335, 388
BshFI GGCC 3 cut(s) 129, 220, 233
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 240
BsmI GAATGC 2 cut(s) 211, 308
BsnI GGCC 3 cut(s) 129, 220, 233
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 5 cut(s) 115, 145, 160, 175, 190
BspANI GGCC 3 cut(s) 129, 220, 233
BsrBI CCGCTC 3 cut(s) 145, 175, 190
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 369
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 217, 246, 332
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 335, 388
BsuRI GGCC 3 cut(s) 129, 220, 233
Cac8I GCNNGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 1 cut(s) 374
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 2 cut(s) 130, 175
Eco147I AGGCCT 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 377
FaiI YATR 3 cut(s) 346, 375, 393
FatI CATG 1 cut(s) 373
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 324, 402
Fsp4HI GCNGC 2 cut(s) 324, 402
GluI GCNGC 2 cut(s) 324, 402
HaeIII GGCC 3 cut(s) 129, 220, 233
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 1 cut(s) 316
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 66, 79
Hpy188I TCNGA 4 cut(s) 17, 142, 172, 187
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 2 cut(s) 66, 79
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 6 cut(s) 97, 112, 127, 142, 157, 172
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 4 cut(s) 100, 323, 367, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 246, 332
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 3 cut(s) 142, 172, 187
LpnPI CCDG 5 cut(s) 143, 226, 236, 252, 263
Lsp1109I GCAGC 2 cut(s) 335, 388
LweI GCATC 6 cut(s) 116, 146, 161, 176, 191, 206
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 22, 293
MalI GATC 1 cut(s) 12
MbiI CCGCTC 3 cut(s) 145, 175, 190
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 214, 282, 333
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 233
MnlI CCTC 5 cut(s) 187, 210, 231, 274, 349
Mox20I TGGCCA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 2 cut(s) 211, 308
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 217, 246, 332
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 377
PceI AGGCCT 1 cut(s) 220
PctI GAATGC 2 cut(s) 211, 308
PfeI GAWTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 2 cut(s) 325, 403
Ppu21I YACGTR 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 401
SatI GCNGC 2 cut(s) 324, 402
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 251
SetI ASST 5 cut(s) 75, 84, 328, 337, 403
SfaNI GCATC 6 cut(s) 116, 146, 161, 176, 191, 206
Sse9I AATT 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 5 cut(s) 115, 145, 160, 175, 190
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 200, 215, 353
TasI AATT 1 cut(s) 59
TfiI GAWTC 1 cut(s) 316
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 323, 401
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 333
Van91I CCANNNNNTGG 1 cut(s) 240
XceI RCATGY 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.