Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000394

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Reverse (-)

76386 .. 93032

Gene Structure 16647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom394g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAAACTCATCGAACCTTAGCTTGGAATTGAGCCTTAGCAGTGATACGGGCGCGCCGCGTCAAGGTAACGTATGGCGCCCTTCTTTCTTATCTTCTAACGGTCCTCTCACAGGTGAAGACTCCGTGATGCAGGACGCCACAACAGCTACAATAGTAGCTAGGAACCTCCTCACTCCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGAGTCCCTCGCACTTAGTGTTCAGTGTGCGAGTTCTGTGTCCAACATGGGCCAACGCCTGCTTGCCCGCTCCCGTCAGGTGGAATCATTGATGGCAGAGGTGGAAAGTCTTAAGCATACTCATGGATCAGATCCAGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

124

Amino Acids

13.0

Weight (kDa)

5.25

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccBSI	CCGCTC	1 cut(s)	297
AccII	CGCG	2 cut(s)	56, 61
AciI	CCGC	2 cut(s)	59, 295
AclWI	GGATC	2 cut(s)	353, 361
AcoI	YGGCCR	1 cut(s)	219
AcyI	GRCGYC	2 cut(s)	79, 138
AdeI	CACNNNGTG	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	25, 65, 113, 307
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	24, 149, 161, 368
AluI	AGCT	4 cut(s)	24, 149, 161, 368
AlwI	GGATC	2 cut(s)	353, 361
AoxI	GGCC	2 cut(s)	219, 277
ApeKI	GCWGC	2 cut(s)	193, 365
AscI	GGCGCGCC	1 cut(s)	54
AspLEI	GCGC	3 cut(s)	56, 58, 81
AspS9I	GGNCC	3 cut(s)	104, 207, 277
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	104, 207
BanI	GGYRCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	82
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	3 cut(s)	59, 194, 366
BlsI	GCNGC	3 cut(s)	60, 195, 367
Bme18I	GGWCC	2 cut(s)	104, 207
BmgT120I	GGNCC	3 cut(s)	104, 207, 277
BmiI	GGNNCC	2 cut(s)	80, 167
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	2 cut(s)	20, 38
BsaHI	GRCGYC	2 cut(s)	79, 138
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 65, 113, 307
BseLI	CCNNNNNNNGG	4 cut(s)	25, 65, 113, 307
BsePI	GCGCGC	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	56, 61
BshFI	GGCC	2 cut(s)	221, 279
BshNI	GGYRCC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	4 cut(s)	25, 65, 113, 307
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	221, 279
Bsp143I	GATC	2 cut(s)	353, 358
BspACI	CCGC	2 cut(s)	59, 295
BspANI	GGCC	2 cut(s)	221, 279
BspFNI	CGCG	2 cut(s)	56, 61
BspLI	GGNNCC	2 cut(s)	80, 167
BspPI	GGATC	2 cut(s)	353, 361
BspT107I	GGYRCC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	297
BssHII	GCGCGC	1 cut(s)	54
BssMI	GATC	2 cut(s)	353, 358
BssNI	GRCGYC	2 cut(s)	79, 138
Bst4CI	ACNGT	2 cut(s)	104, 207
BstACI	GRCGYC	2 cut(s)	79, 138
BstAFI	CTTAAG	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	56, 287, 291, 295
BstDEI	CTNAG	3 cut(s)	20, 38, 242
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstFNI	CGCG	2 cut(s)	56, 61
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	3 cut(s)	56, 58, 81
BstKTI	GATC	2 cut(s)	356, 361
BstMBI	GATC	2 cut(s)	353, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstUI	CGCG	2 cut(s)	56, 61
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	221, 279
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 257
Cac8I	GCNNGC	4 cut(s)	56, 287, 291, 295
CfoI	GCGC	3 cut(s)	56, 58, 81
Cfr13I	GGNCC	3 cut(s)	104, 207, 277
CpoI	CGGWCCG	1 cut(s)	207
CseI	GACGC	2 cut(s)	50, 146
CspI	CGGWCCG	1 cut(s)	207
CviAII	CATG	2 cut(s)	274, 350
CviJI	RGCY	8 cut(s)	24, 36, 149, 161, 193, 221, 279, 368
CviKI_1	RGCY	8 cut(s)	24, 36, 149, 161, 193, 221, 279, 368
DdeI	CTNAG	3 cut(s)	20, 38, 242
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	2 cut(s)	355, 360
DpnII	GATC	2 cut(s)	353, 358
DraIII	CACNNNGTG	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	104, 207
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
FaeI	CATG	2 cut(s)	277, 353
FaiI	YATR	4 cut(s)	76, 275, 345, 351
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	273, 349
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	59, 194, 366
Fsp4HI	GCNGC	3 cut(s)	59, 194, 366
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	3 cut(s)	55, 57, 80
GluI	GCNGC	3 cut(s)	59, 194, 366
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	221, 279
HgaI	GACGC	2 cut(s)	50, 146
HhaI	GCGC	3 cut(s)	56, 58, 81
Hin1I	GRCGYC	2 cut(s)	79, 138
Hin1II	CATG	2 cut(s)	277, 353
Hin6I	GCGC	3 cut(s)	54, 56, 79
HinP1I	GCGC	3 cut(s)	54, 56, 79
HinfI	GANTC	3 cut(s)	122, 230, 311
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	211, 358
Hpy188III	TCNNGA	2 cut(s)	201, 227
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	2 cut(s)	104, 207
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	20, 38, 242
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	79, 138
Hsp92II	CATG	2 cut(s)	277, 353
HspAI	GCGC	3 cut(s)	54, 56, 79
KasI	GGCGCC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	353, 358
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	5 cut(s)	99, 119, 186, 290, 299
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	355, 360
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	2 cut(s)	353, 358
MboII	GAAGA	2 cut(s)	87, 131
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	1 cut(s)	29
Mly113I	GGCGCC	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	116, 239
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	117, 179, 182, 245, 319
MseI	TTAA	2 cut(s)	339, 370
MslI	CAYNNNNRTG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	338
MvnI	CGCG	2 cut(s)	56, 61
MwoI	GCNNNNNNNGC	1 cut(s)	146
NarI	GGCGCC	1 cut(s)	79
NdeII	GATC	2 cut(s)	353, 358
NlaIII	CATG	2 cut(s)	277, 353
NlaIV	GGNNCC	2 cut(s)	80, 167
PalAI	GGCGCGCC	1 cut(s)	54
PauI	GCGCGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	60, 195, 367
PleI	GAGTC	2 cut(s)	116, 238
PluTI	GGCGCC	1 cut(s)	82
PpsI	GAGTC	2 cut(s)	116, 238
PspN4I	GGNNCC	2 cut(s)	80, 167
PspPI	GGNCC	3 cut(s)	104, 207, 277
PsuI	RGATCY	1 cut(s)	358
PteI	GCGCGC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	348
Rsr2I	CGGWCCG	1 cut(s)	207
RsrII	CGGWCCG	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	339, 370
SatI	GCNGC	3 cut(s)	59, 194, 366
Sau3AI	GATC	2 cut(s)	353, 358
Sau96I	GGNCC	3 cut(s)	104, 207, 277
SchI	GAGTC	2 cut(s)	116, 239
SfaNI	GCATC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	80
SgsI	GGCGCGCC	1 cut(s)	54
SinI	GGWCC	2 cut(s)	104, 207
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	2 cut(s)	59, 295
SspDI	GGCGCC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	104, 207
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	29
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	339, 370
Tru9I	TTAA	2 cut(s)	339, 370
TscAI	CASTG	2 cut(s)	49, 257
TseI	GCWGC	2 cut(s)	193, 365
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	49, 257
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	104, 207
XagI	CCTNNNNNAGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.