Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Reverse (-)

27328967 .. 27336380

Gene Structure 7414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g30060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAAATTAATAAATCCACAACTTATGAAACGCAATTAGAAGTAATCAAATCAAAATGCAAGCATAAACATATATTTCGAATCCCCCCCCTAGCCAAAGGGGGGGGGGGCATGTTGTATGGTTATGATAACAGCGATCCGGTTGCGCCCCGTCAAGGTAATGTATGGCGCCCTTCTTTTTTATCTTCTAACGGTCTTCTTACAGGTGAAGACTCCGTGATGCAGGACGCCATAACAGCTACAATAGTAGCTAGGAACCTCCTCACTCCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGAGTCCCTCGCTCTCAGTGTTCAGTGTGCAGGCTCTGTGTCCAACATGGGCCAACGCCTACTTGCTCGCTCCCGTCAGGTTGAATCGTTGATGGCAGAGGTGGAAAGTCTCAAGCAAGAGATCAAGCAGCTGAAGTATGAGAATAGAAGTTTGCACGTGCTTGCAAACAACTATTCGACGGGCATGAAGAGGAAGCTTGATGAGCTACAAGAGTCTGAAGGTCGGATTCAAAGTGACCGTCAAAGGTTTTCGAATCAAAGAAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

196

Amino Acids

21.81

Weight (kDa)

9.51

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	470, 555
AcvI	CACGTG	1 cut(s)	475
AcyI	GRCGYC	2 cut(s)	169, 228
AfiI	CCNNNNNNNGG	2 cut(s)	102, 155
AgsI	TTSAA	3 cut(s)	317, 401, 548
AluBI	AGCT	5 cut(s)	239, 251, 448, 514, 523
AluI	AGCT	5 cut(s)	239, 251, 448, 514, 523
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	309, 367
ApeKI	GCWGC	2 cut(s)	283, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AseI	ATTAAT	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	148, 171
AspS9I	GGNCC	2 cut(s)	297, 367
AsuHPI	GGTGA	1 cut(s)	218
AsuII	TTCGAA	2 cut(s)	79, 569
AvaII	GGWCC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	475
BbsI	GAAGAC	2 cut(s)	188, 216
BbvI	GCAGC	2 cut(s)	270, 457
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	92, 252
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	2 cut(s)	284, 446
BlsI	GCNGC	2 cut(s)	285, 447
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	297, 367
BmiI	GGNNCC	2 cut(s)	170, 257
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	2 cut(s)	188, 216
Bpu14I	TTCGAA	2 cut(s)	79, 569
BpuEI	CTTGAG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	475
BsaHI	GRCGYC	2 cut(s)	169, 228
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 155
BseLI	CCNNNNNNNGG	2 cut(s)	102, 155
BseMII	CTCAG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	270, 457
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	311, 369
BshNI	GGYRCC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	102, 155
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	311, 369
Bsp119I	TTCGAA	2 cut(s)	79, 569
Bsp143I	GATC	2 cut(s)	136, 438
BspANI	GGCC	2 cut(s)	311, 369
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	170, 257
BspPI	GGATC	1 cut(s)	131
BspT104I	TTCGAA	2 cut(s)	79, 569
BspT107I	GGYRCC	1 cut(s)	168
BssMI	GATC	2 cut(s)	136, 438
BssNI	GRCGYC	2 cut(s)	169, 228
Bst4CI	ACNGT	3 cut(s)	194, 297, 557
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	2 cut(s)	169, 228
BstBAI	YACGTR	1 cut(s)	475
BstBI	TTCGAA	2 cut(s)	79, 569
BstC8I	GCNNGC	4 cut(s)	62, 349, 385, 480
BstDEI	CTNAG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	148, 171
BstKTI	GATC	2 cut(s)	139, 441
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	2 cut(s)	136, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 520
BstNSI	RCATGY	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	270, 457
BstV2I	GAAGAC	2 cut(s)	188, 216
BsuRI	GGCC	2 cut(s)	311, 369
BtsIMutI	CAGTG	2 cut(s)	340, 347
Cac8I	GCNNGC	4 cut(s)	62, 349, 385, 480
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	2 cut(s)	148, 171
Cfr13I	GGNCC	2 cut(s)	297, 367
CpoI	CGGWCCG	1 cut(s)	297
CseI	GACGC	1 cut(s)	236
CspI	CGGWCCG	1 cut(s)	297
CviAII	CATG	3 cut(s)	112, 364, 502
DdeI	CTNAG	1 cut(s)	332
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	2 cut(s)	138, 440
DpnII	GATC	2 cut(s)	136, 438
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	470, 555
Eco72I	CACGTG	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
FaeI	CATG	3 cut(s)	115, 367, 505
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	111, 363, 501
Fnu4HI	GCNGC	2 cut(s)	284, 446
Fsp4HI	GCNGC	2 cut(s)	284, 446
FspBI	CTAG	2 cut(s)	92, 252
GlaI	GCGC	2 cut(s)	147, 170
GluI	GCNGC	2 cut(s)	284, 446
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	311, 369
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	148, 171
Hin1I	GRCGYC	2 cut(s)	169, 228
Hin1II	CATG	3 cut(s)	115, 367, 505
Hin6I	GCGC	2 cut(s)	146, 169
HinP1I	GCGC	2 cut(s)	146, 169
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	7 cut(s)	81, 212, 320, 401, 530, 544, 571
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	301, 535, 543
Hpy188III	TCNNGA	2 cut(s)	291, 317
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	2 cut(s)	183, 530
HpyCH4III	ACNGT	3 cut(s)	194, 297, 557
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	5 cut(s)	60, 223, 347, 472, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 520
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	2 cut(s)	169, 228
Hsp92II	CATG	3 cut(s)	115, 367, 505
HspAI	GCGC	2 cut(s)	146, 169
KasI	GGCGCC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	136, 438
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	6 cut(s)	153, 189, 209, 276, 333, 380
Lsp1109I	GCAGC	2 cut(s)	270, 457
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	92, 252
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	2 cut(s)	138, 440
MboI	GATC	2 cut(s)	136, 438
MboII	GAAGA	4 cut(s)	177, 188, 221, 517
MluCI	AATT	2 cut(s)	6, 35
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	3 cut(s)	206, 329, 539
MmeI	TCCRAC	2 cut(s)	384, 521
MnlI	CCTC	5 cut(s)	269, 272, 335, 409, 501
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	236, 520
NarI	GGCGCC	1 cut(s)	169
NdeII	GATC	2 cut(s)	136, 438
NlaIII	CATG	3 cut(s)	115, 367, 505
NlaIV	GGNNCC	2 cut(s)	170, 257
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	115
NspV	TTCGAA	2 cut(s)	79, 569
PfeI	GAWTC	4 cut(s)	81, 401, 544, 571
PkrI	GCNGC	2 cut(s)	285, 447
PleI	GAGTC	3 cut(s)	206, 328, 538
PluTI	GGCGCC	1 cut(s)	172
PmaCI	CACGTG	1 cut(s)	475
PmlI	CACGTG	1 cut(s)	475
PpsI	GAGTC	3 cut(s)	206, 328, 538
Ppu21I	YACGTR	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	9
PspCI	CACGTG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	170, 257
PspPI	GGNCC	2 cut(s)	297, 367
PstNI	CAGNNNCTG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	448
Rsr2I	CGGWCCG	1 cut(s)	297
RsrII	CGGWCCG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	284, 446
Sau3AI	GATC	2 cut(s)	136, 438
Sau96I	GGNCC	2 cut(s)	297, 367
SchI	GAGTC	3 cut(s)	206, 329, 539
SfaNI	GCATC	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	170
SfuI	TTCGAA	2 cut(s)	79, 569
SinI	GGWCC	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	6, 35
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	92, 252
TaaI	ACNGT	3 cut(s)	194, 297, 557
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	79, 494, 569
TasI	AATT	2 cut(s)	6, 35
TfiI	GAWTC	4 cut(s)	81, 401, 544, 571
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	340, 347
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	283, 445
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	17, 42, 518
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	340, 347
VpaK11BI	GGWCC	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	9
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	2 cut(s)	92, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.