pycom13g25590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000120
Physical Location & Seq
Forward (+)
22329679 .. 22331300
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g25590.7

Sequence Viewer

Length: 1158 bp
ATGAAGTTGTGTAGTGACCACCATAGCCAAATTGCCATATTTCCCTATTTCATTTGTTTTGTAGGATTTAACCCCGTTGAGCCTTGTCGTAGAGTAGGACTACCCATACCTTTGTTCTTGAAGCATAGTAAAAGCATAACTCAAGATGAATTCCTTTTGATCATTGCATTGCAGAAAACAATCTTGAATGAGGCACAGCAAAGAAAAGAAAGAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAAAATATTTCGTGGAAAATAAGAAGAGAAAAAAAAAATGTTCTCAAGTGTTGTTTGTTGAAGGAAGGGTCCAAAACATTGAATTCGCCCCTAATTGATTGCTTGAACCTTCCTTTTAAAACGTTTGTTTTCCCTATCCTTTCATTGTTAGCCAACTCCCCAAGCCCCGTTACAACCCTTGACTTTAATCTTGAGTGTTGTGTGTTTCAATTTGTGGAGTTTGAATTTGGTTTGAGTATATGGTGTCACTGGTTCTCGCATCTAAGTAGTAGCGTTCCATTCATGAGATCATATCTAAACATGTTATTAACTCCGGAAATTGCGTTCTTAGTTATACATATATGTGAGCATTCAGAGTGCATATCTTGTAAGGAATTGAGGAAATTTTCTAAGGCATGTTACTACATTCAAAATCATGATTTAATTGGTTATGTAAGGCTAAAATCTGTGGGAATGATGATTTTTAACATGTCATGTGCATTGGAAATCTCTGAGACCCTTGTTGGAAGGTTAGGTTGTGTTTTACTTCAAAAGCTAAGTGTGGGGGAATTTGATAGGGGCATATTTATGCACCTTAGTTTAGCTTGTTCTTGTGCATTTATAGTGTTTTTCCTTACTAAAGGCAAAGTATGCAAAAGGATGCATTTTGGAGCCTTTTGGAGCAAATTAGAGCTTGGAATGGATATCATATTCCTACTTGAGCAAGGTTTCCTAGTTGAAGTAGGAAAGTCCCTAATGGAAGATGGTTTCCTAGTTGAAATAGGATTCCTAGTTAAAATGGGTTTCCTAGTTGAATTAGGATTCCTAGAAGAACAAAGTTTCCTACTCAAACAAGGTTTCCTACTTGAAGTAGGAAGTAATCAAGTGAAGCAACAAAGAAGTTTTCCAAGTCCAAGAAGGAAAAGGAGTCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

44.42

Weight (kDa)

9.32

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 553
AclI AACGTT 1 cut(s) 362
AcsI RAATTY 5 cut(s) 149, 322, 464, 623, 788
AflIII ACRYGT 2 cut(s) 540, 708
AloI GAACNNNNNNTCC 4 cut(s) 548, 580, 1044, 1076
AluBI AGCT 3 cut(s) 775, 824, 913
AluI AGCT 3 cut(s) 775, 824, 913
Alw26I GTCTC 1 cut(s) 728
Aor13HI TCCGGA 1 cut(s) 553
ApoI RAATTY 5 cut(s) 149, 322, 464, 623, 788
AspS9I GGNCC 1 cut(s) 309
AvaII GGWCC 1 cut(s) 309
BccI CCATC 1 cut(s) 977
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 728
BfaI CTAG 5 cut(s) 953, 992, 1010, 1028, 1046
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 310, 892
BmsI GCATC 2 cut(s) 508, 870
BpuEI CTTGAG 4 cut(s) 126, 269, 452, 959
BsaI GGTCTC 1 cut(s) 728
BsaWI WCCGGW 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 2 cut(s) 162, 167
BseAI TCCGGA 1 cut(s) 553
BseGI GGATG 1 cut(s) 885
BseMI GCAATG 2 cut(s) 162, 167
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 1 cut(s) 494
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 955
BsmAI GTCTC 1 cut(s) 728
BsmFI GGGAC 1 cut(s) 955
BsmI GAATGC 1 cut(s) 589
Bso31I GGTCTC 1 cut(s) 728
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 2 cut(s) 159, 527
BspCNI CTCAG 1 cut(s) 724
BspEI TCCGGA 1 cut(s) 553
BspHI TCATGA 2 cut(s) 522, 655
BspLI GGNNCC 2 cut(s) 310, 892
BspTNI GGTCTC 1 cut(s) 728
BsrDI GCAATG 2 cut(s) 162, 167
BsrI ACTGG 1 cut(s) 494
BssMI GATC 2 cut(s) 159, 527
Bst6I CTCTTC 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 870
BstDEI CTNAG 6 cut(s) 503, 568, 630, 732, 776, 815
BstF5I GGATG 1 cut(s) 885
BstKTI GATC 2 cut(s) 162, 530
BstMAI GTCTC 1 cut(s) 728
BstMBI GATC 2 cut(s) 159, 527
BstMWI GCNNNNNNNGC 1 cut(s) 870
BstNSI RCATGY 3 cut(s) 544, 639, 712
BtsCI GGATG 1 cut(s) 885
BtsIMutI CAGTG 1 cut(s) 487
CciI TCATGA 2 cut(s) 522, 655
Cfr13I GGNCC 1 cut(s) 309
CviAII CATG 6 cut(s) 523, 541, 636, 656, 709, 714
CviJI RGCY 9 cut(s) 27, 82, 392, 405, 679, 775, 824, 893, 913
CviKI_1 RGCY 9 cut(s) 27, 82, 392, 405, 679, 775, 824, 893, 913
DdeI CTNAG 6 cut(s) 503, 568, 630, 732, 776, 815
DpnI GATC 2 cut(s) 161, 529
DpnII GATC 2 cut(s) 159, 527
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 728
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 309
EcoRI GAATTC 2 cut(s) 149, 322
EcoRV GATATC 1 cut(s) 925
EcoT22I ATGCAT 1 cut(s) 885
FaeI CATG 6 cut(s) 526, 544, 639, 659, 712, 717
FaqI GGGAC 1 cut(s) 955
FatI CATG 6 cut(s) 522, 540, 635, 655, 708, 713
FbaI TGATCA 1 cut(s) 159
FokI GGATG 1 cut(s) 892
FspBI CTAG 5 cut(s) 953, 992, 1010, 1028, 1046
HapII CCGG 1 cut(s) 554
Hin1II CATG 6 cut(s) 526, 544, 639, 659, 712, 717
HinfI GANTC 3 cut(s) 1005, 1041, 1147
HpaII CCGG 1 cut(s) 554
Hpy188I TCNGA 2 cut(s) 595, 733
Hpy188III TCNNGA 7 cut(s) 118, 143, 184, 431, 523, 554, 656
HpyAV CCTTC 5 cut(s) 295, 299, 359, 741, 1131
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 8 cut(s) 167, 172, 600, 719, 811, 836, 873, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 870
HpyF3I CTNAG 6 cut(s) 503, 568, 630, 732, 776, 815
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 6 cut(s) 526, 544, 639, 659, 712, 717
Kpn2I TCCGGA 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 527
LmnI GCTCC 2 cut(s) 890, 900
LpnPI CCDG 2 cut(s) 475, 567
LweI GCATC 2 cut(s) 508, 870
MaeI CTAG 5 cut(s) 953, 992, 1010, 1028, 1046
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 4 cut(s) 14, 409, 485, 638
MalI GATC 2 cut(s) 161, 529
MboI GATC 2 cut(s) 159, 527
MboII GAAGA 4 cut(s) 231, 276, 992, 1061
MlyI GAGTC 1 cut(s) 1156
MmeI TCCRAC 1 cut(s) 724
MnlI CCTC 2 cut(s) 184, 612
Mph1103I ATGCAT 1 cut(s) 885
MroI TCCGGA 1 cut(s) 553
MseI TTAA 7 cut(s) 69, 357, 426, 548, 662, 705, 1014
MslI CAYNNNNRTG 2 cut(s) 582, 806
MspI CCGG 1 cut(s) 554
Mva1269I GAATGC 1 cut(s) 589
MwoI GCNNNNNNNGC 1 cut(s) 870
NdeII GATC 2 cut(s) 159, 527
NlaIII CATG 6 cut(s) 526, 544, 639, 659, 712, 717
NlaIV GGNNCC 2 cut(s) 310, 892
NmuCI GTSAC 2 cut(s) 14, 485
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 3 cut(s) 544, 639, 712
PagI TCATGA 2 cut(s) 522, 655
PciI ACATGT 2 cut(s) 540, 708
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 2 cut(s) 1005, 1041
PleI GAGTC 1 cut(s) 1155
PpsI GAGTC 1 cut(s) 1155
PscI ACATGT 2 cut(s) 540, 708
Psp1406I AACGTT 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 310, 892
PspPI GGNCC 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 582, 806
SaqAI TTAA 7 cut(s) 69, 357, 426, 548, 662, 705, 1014
Sau3AI GATC 2 cut(s) 159, 527
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 1156
SfaNI GCATC 2 cut(s) 508, 870
SinI GGWCC 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 582, 806
SmlI CTYRAG 4 cut(s) 141, 284, 431, 938
SmoI CTYRAG 4 cut(s) 141, 284, 431, 938
SspI AATATT 1 cut(s) 247
SspMI CTAG 5 cut(s) 953, 992, 1010, 1028, 1046
TaiI ACGT 1 cut(s) 365
TfiI GAWTC 2 cut(s) 1005, 1041
Tru1I TTAA 7 cut(s) 69, 357, 426, 548, 662, 705, 1014
Tru9I TTAA 7 cut(s) 69, 357, 426, 548, 662, 705, 1014
TscAI CASTG 1 cut(s) 494
TseFI GTSAC 2 cut(s) 14, 485
Tsp45I GTSAC 2 cut(s) 14, 485
TspDTI ATGAA 5 cut(s) 17, 40, 162, 372, 511
TspRI CASTG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 5 cut(s) 149, 322, 464, 623, 788
XceI RCATGY 3 cut(s) 544, 639, 712
XspI CTAG 5 cut(s) 953, 992, 1010, 1028, 1046
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.