Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Reverse (-)

12522732 .. 12523049

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTCGCACATAGCTATGCTACAACCATGAAGAGAAAGCTTGACCAGTTACAGGAATCCGAAGGTCAGATTTTAAATGATCATCAGAGGTTTGTGAGTTTGTTCGAAAGGCATTTACTGCCTTCGTCCTCTGGGGCTGTACCACATATTGAAGCTCCAAATGATCAACCTCTGGTGCCTCCTCTTTCTGGGGTTCTGCCCAGTACTGAGGCTCCAAATAATCACCCTCCGGTGCCTCCTATTTCTGGGGCTTTGCCGAATGTTGAGACTTATCCTGAGCAACCTTTGTGGAGGCGCCCTCCTGTTTGTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

5.88

Isoelectric Point (pI)

86.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	175, 232, 294
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	141, 205
AfiI	CCNNNNNNNGG	3 cut(s)	52, 188, 245
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	3 cut(s)	15, 40, 155
AluI	AGCT	3 cut(s)	15, 40, 155
Alw26I	GTCTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	105
BanI	GGYRCC	3 cut(s)	175, 232, 294
BclI	TGATCA	2 cut(s)	79, 163
BcoDI	GTCTC	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	205
BmiI	GGNNCC	4 cut(s)	177, 213, 234, 296
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 188, 245
Bse1I	ACTGG	2 cut(s)	46, 201
BseLI	CCNNNNNNNGG	3 cut(s)	52, 188, 245
BseMII	CTCAG	2 cut(s)	198, 267
BseNI	ACTGG	2 cut(s)	46, 201
BseRI	GAGGAG	1 cut(s)	171
BshNI	GGYRCC	3 cut(s)	175, 232, 294
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	52, 188, 245
BsmAI	GTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	79, 163
BspCNI	CTCAG	2 cut(s)	199, 268
BspLI	GGNNCC	4 cut(s)	177, 213, 234, 296
BspT104I	TTCGAA	1 cut(s)	105
BspT107I	GGYRCC	3 cut(s)	175, 232, 294
BsrI	ACTGG	2 cut(s)	46, 201
BssMI	GATC	2 cut(s)	79, 163
BssNI	GRCGYC	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	207, 276
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	82, 166
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	79, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	140, 204
CspCI	CAANNNNNGTGG	2 cut(s)	269, 304
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	6 cut(s)	15, 40, 137, 155, 212, 251
CviKI_1	RGCY	6 cut(s)	15, 40, 137, 155, 212, 251
CviQI	GTAC	2 cut(s)	140, 204
DdeI	CTNAG	2 cut(s)	207, 276
DinI	GGCGCC	1 cut(s)	296
DpnI	GATC	2 cut(s)	81, 165
DpnII	GATC	2 cut(s)	79, 163
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EgeI	GGCGCC	1 cut(s)	296
EheI	GGCGCC	1 cut(s)	296
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	12, 18, 29, 147
FatI	CATG	1 cut(s)	27
FbaI	TGATCA	2 cut(s)	79, 163
GlaI	GCGC	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	298
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	61, 69, 87
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	56, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	2 cut(s)	207, 276
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	295
KasI	GGCGCC	1 cut(s)	294
Ksp22I	TGATCA	2 cut(s)	79, 163
Kzo9I	GATC	2 cut(s)	79, 163
LmnI	GCTCC	2 cut(s)	160, 217
LpnPI	CCDG	9 cut(s)	38, 59, 117, 158, 174, 214, 231, 243, 288
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	81, 165
MboI	GATC	2 cut(s)	79, 163
MboII	GAAGA	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	295
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	295
NdeII	GATC	2 cut(s)	79, 163
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	4 cut(s)	177, 213, 234, 296
NspV	TTCGAA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	298
PspN4I	GGNNCC	4 cut(s)	177, 213, 234, 296
RsaI	GTAC	2 cut(s)	141, 205
RsaNI	GTAC	2 cut(s)	140, 204
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	79, 163
ScaI	AGTACT	1 cut(s)	205
SetI	ASST	7 cut(s)	17, 42, 67, 92, 157, 172, 286
SfoI	GGCGCC	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	15
SspDI	GGCGCC	1 cut(s)	294
TaqI	TCGA	1 cut(s)	105
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.