Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Forward (+)

10757325 .. 10758011

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTAACCCATCTAACATTTGCTTAGATTTGAGTCTCAGCAGTGATCCGAGTGCGCCGCGTCAGGTAAATGTATGGTGCCCTTCTTTCTTATCTTCTAATGGCCCTCTTACAGGTGAAGACTCCATGATGAAGGATGCAACAACAGCTACGATAGTAGCTAGGAACCTCCTCACTCCTAAAGATAGTAGGCTGCTTTCAGGACAGTCCGATGAGTTGGCCATTCAAGAGTCCCTAGCTCTCAGTGTTCAGTGTGCGGGCTCTGTGTCCAACATGGGCCAACGCCTACTTGCTCGATCCCGCCAAGTTGAATCCTTGATGGCGGAGGTGGAAAGTCTTAAGCAAGAGATCAAACAGCTTAAGCACGAGAATAGAAGTTTGCATGTGCTTGCAAATAACTATTCGACAGGCATGAAGAGGAAGCTTGATGAGCTGCAAGAATCCAATGGTCGAATTCAAAGTGACCGTCAAAGGCTTGCGGCTTTCTTCCAGAGGCACCTTTTTCCTGTTCATCTAGTGTTCCACCAAGTGTTGAGGCCTCGAATGATCCATCTTCGATGTCTCCCGCTCCTGGAGTTTTGCCACGTAGTGGGGCTTCACGTGAACAACCTTTGTGAAAGTTACATTCTTTTATTTTTTTTTTTTATTTTTTTTTTTTTTAATCAACGGCATGGAATTTATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

229

Amino Acids

25.93

Weight (kDa)

8.59

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	78, 495
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	568
AccII	CGCG	1 cut(s)	61
AciI	CCGC	6 cut(s)	59, 257, 301, 323, 479, 566
AclWI	GGATC	3 cut(s)	41, 291, 541
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	453, 675
AcvI	CACGTG	1 cut(s)	601
AdeI	CACNNNGTG	2 cut(s)	529, 589
AfiI	CCNNNNNNNGG	3 cut(s)	113, 571, 589
AflII	CTTAAG	2 cut(s)	338, 359
AgsI	TTSAA	3 cut(s)	227, 311, 458
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	6 cut(s)	149, 161, 239, 358, 424, 433
AluI	AGCT	6 cut(s)	149, 161, 239, 358, 424, 433
Alw26I	GTCTC	2 cut(s)	41, 566
AlwI	GGATC	3 cut(s)	41, 291, 541
AoxI	GGCC	4 cut(s)	103, 219, 277, 536
ApeKI	GCWGC	2 cut(s)	193, 433
ApoI	RAATTY	2 cut(s)	453, 675
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	104, 277
AsuHPI	GGTGA	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	78, 495
BanII	GRGCYC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	180, 420
BccI	CCATC	3 cut(s)	19, 313, 558
BceAI	ACGGC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	41, 566
BfaI	CTAG	3 cut(s)	162, 236, 515
BfrI	CTTAAG	2 cut(s)	338, 359
BisI	GCNGC	4 cut(s)	59, 194, 434, 480
BlsI	GCNGC	4 cut(s)	60, 195, 435, 481
Bme1390I	CCNGG	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	104, 277
BmiI	GGNNCC	3 cut(s)	80, 167, 497
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	593
BsaAI	YACGTR	2 cut(s)	586, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 571, 589
BseBI	CCWGG	1 cut(s)	572
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	113, 571, 589
BseMII	CTCAG	2 cut(s)	52, 256
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	180, 420
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	4 cut(s)	105, 221, 279, 538
BshNI	GGYRCC	2 cut(s)	78, 495
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	113, 571, 589
BsmAI	GTCTC	2 cut(s)	41, 566
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	4 cut(s)	105, 221, 279, 538
Bsp1286I	GDGCHC	2 cut(s)	83, 263
Bsp143I	GATC	4 cut(s)	46, 296, 348, 546
BspACI	CCGC	6 cut(s)	59, 257, 301, 323, 479, 566
BspANI	GGCC	4 cut(s)	105, 221, 279, 538
BspCNI	CTCAG	2 cut(s)	51, 255
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	80, 167, 497
BspPI	GGATC	3 cut(s)	41, 291, 541
BspT107I	GGYRCC	2 cut(s)	78, 495
BspTI	CTTAAG	2 cut(s)	338, 359
BsrBI	CCGCTC	1 cut(s)	568
BssMI	GATC	4 cut(s)	46, 296, 348, 546
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	207, 467
Bst6I	CTCTTC	1 cut(s)	410
BstAFI	CTTAAG	2 cut(s)	338, 359
BstBAI	YACGTR	2 cut(s)	586, 601
BstC8I	GCNNGC	3 cut(s)	259, 390, 477
BstDEI	CTNAG	3 cut(s)	25, 38, 242
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	4 cut(s)	49, 299, 351, 549
BstMAI	GTCTC	2 cut(s)	41, 566
BstMBI	GATC	4 cut(s)	46, 296, 348, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 430
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	180, 420
BstV2I	GAAGAC	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	105, 221, 279, 538
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	49, 250, 257
Cac8I	GCNNGC	3 cut(s)	259, 390, 477
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	104, 277
CseI	GACGC	1 cut(s)	50
CviAII	CATG	5 cut(s)	127, 274, 383, 412, 671
DdeI	CTNAG	3 cut(s)	25, 38, 242
DpnI	GATC	4 cut(s)	48, 298, 350, 548
DpnII	GATC	4 cut(s)	46, 296, 348, 546
DraIII	CACNNNGTG	2 cut(s)	529, 589
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	263
FaeI	CATG	5 cut(s)	130, 277, 386, 415, 674
FaiI	YATR	6 cut(s)	76, 128, 275, 384, 413, 672
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	5 cut(s)	126, 273, 382, 411, 670
FauI	CCCGC	3 cut(s)	250, 308, 573
Fnu4HI	GCNGC	4 cut(s)	59, 194, 434, 480
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	59, 194, 434, 480
FspBI	CTAG	3 cut(s)	162, 236, 515
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	4 cut(s)	59, 194, 434, 480
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	4 cut(s)	105, 221, 279, 538
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	5 cut(s)	130, 277, 386, 415, 674
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	34, 122, 230, 311, 440
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	2 cut(s)	51, 211
Hpy188III	TCNNGA	3 cut(s)	201, 227, 490
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	2 cut(s)	93, 127
HpyCH4III	ACNGT	2 cut(s)	207, 467
HpyCH4IV	ACGT	2 cut(s)	585, 600
HpyCH4V	TGCA	4 cut(s)	140, 382, 392, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 430
HpyF3I	CTNAG	3 cut(s)	25, 38, 242
HpySE526I	ACGT	2 cut(s)	585, 600
Hsp92II	CATG	5 cut(s)	130, 277, 386, 415, 674
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	46, 296, 348, 546
LmnI	GCTCC	1 cut(s)	573
LpnPI	CCDG	8 cut(s)	50, 99, 186, 393, 503, 519, 557, 584
Lsp1109I	GCAGC	2 cut(s)	180, 420
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	3 cut(s)	162, 236, 515
MaeII	ACGT	2 cut(s)	585, 600
MaeIII	GTNAC	2 cut(s)	461, 620
MalI	GATC	4 cut(s)	48, 298, 350, 548
MbiI	CCGCTC	1 cut(s)	568
MboI	GATC	4 cut(s)	46, 296, 348, 546
MboII	GAAGA	5 cut(s)	87, 131, 427, 478, 545
MhlI	GDGCHC	2 cut(s)	83, 263
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	453, 675
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	3 cut(s)	43, 116, 239
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	8 cut(s)	117, 179, 182, 319, 411, 486, 528, 549
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	3 cut(s)	339, 360, 660
Msp20I	TGGCCA	1 cut(s)	221
MspCI	CTTAAG	2 cut(s)	338, 359
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	146, 430
NdeII	GATC	4 cut(s)	46, 296, 348, 546
NlaIII	CATG	5 cut(s)	130, 277, 386, 415, 674
NlaIV	GGNNCC	3 cut(s)	80, 167, 497
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	311, 440
PflMI	CCANNNNNTGG	1 cut(s)	589
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	60, 195, 435, 481
PleI	GAGTC	3 cut(s)	42, 116, 238
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
PpsI	GAGTC	3 cut(s)	42, 116, 238
Ppu21I	YACGTR	2 cut(s)	586, 601
Psp6I	CCWGG	1 cut(s)	570
PspCI	CACGTG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	80, 167, 497
PspPI	GGNCC	2 cut(s)	104, 277
SaqAI	TTAA	3 cut(s)	339, 360, 660
SatI	GCNGC	4 cut(s)	59, 194, 434, 480
Sau3AI	GATC	4 cut(s)	46, 296, 348, 546
Sau96I	GGNCC	2 cut(s)	104, 277
SchI	GAGTC	3 cut(s)	43, 116, 239
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	2 cut(s)	83, 263
SfaNI	GCATC	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	338, 359
SmoI	CTYRAG	2 cut(s)	338, 359
Sse9I	AATT	2 cut(s)	453, 675
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	6 cut(s)	59, 257, 301, 323, 479, 566
SspMI	CTAG	3 cut(s)	162, 236, 515
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	207, 467
TaiI	ACGT	2 cut(s)	588, 603
TaqI	TCGA	5 cut(s)	295, 404, 451, 541, 556
TasI	AATT	2 cut(s)	453, 675
TauI	GCSGC	2 cut(s)	61, 482
TfiI	GAWTC	2 cut(s)	311, 440
Tru1I	TTAA	3 cut(s)	339, 360, 660
Tru9I	TTAA	3 cut(s)	339, 360, 660
TscAI	CASTG	3 cut(s)	49, 250, 257
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	193, 433
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	146, 428, 500
TspRI	CASTG	3 cut(s)	49, 250, 257
Van91I	CCANNNNNTGG	1 cut(s)	589
Vha464I	CTTAAG	2 cut(s)	338, 359
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	2 cut(s)	453, 675
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	3 cut(s)	162, 236, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.