Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Forward (+)

22150837 .. 22152081

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g25290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAATCAGCACGTGTTTGTTATGCTTGTCTCTACATGCTTCAATTTTCACTTGCCTTACTTGTTCCCCTTGCATAAGTGGTATTTTCCCTGGTTTTCCCTCATGCATGTTGGAATGCAAACCTTGCATTTGAAATGTCCTTCACTTCTTGGTGACTCATCCATGCGTGGCAACTTCAGTGTAAAAAACCTAGCTCCACCAGCAGTTGAAGATGAGTACTCGAGAGCAATTCTAGGTGAGCAATCAGGAAAGGTTCCAAGCAGTCGGTTCCTTACCGAAAGTTTGAGTGGAGGTTTCAACATATTGCTTTATATATCCTTGTTTTTGCAGGTAAGAACAAGGGCAAAGGAAATGACAGGGAGATTGCATGATATGAGATACTCTTGTTCTCGAAGAAAACTGAGTATTTCGAGATACTTTGTTGAAGATGCATTCTCGAATATGAGGACGATTTTCAAAAGCATGCAGTGGTGTTGTGCCTTTACTCTTGTCGGCAACTGTGGTGTAATTAGAACAATAAGATTTACGCGTTTTCAACTTTGTCAGAGATCTTTGACAAAGTTGCACGCGATATCTGAAAAAGCTGAGATTGCGTCTGAAAAATGCCAACAAACTTTATTCAGGAAAATCTGGCTTTTGAAATTCAAAGAGCGATACATCAATTGTGTTCAAGAGTATGCTCAGAAAGTTACTGCCTGTAGAAATTTTCCCCTTTCTTGCACTTCTGAGATTTTATTTGACCTCATTTTTCCTTCCTCATTTCTGAAAATAGCTTGCCCATCTAACATTTGTTTAGATTTGAGTCTTAGAAGTGATACAGACGAGCAGCGTCAAGATAATATATGGCGCCCATCCTTCTTATTTTCTAATGGTCCTCTTACAGTTGGGGACTATGTGATGAAGAATAACATAACCGCTACTGTGGTAGCTAGGAATCTTCTCACTCCAAGGGATAACATAATCCTTTCAAAACGGTCCGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

329

Amino Acids

37.94

Weight (kDa)

9.36

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	846
AccII	CGCG	2 cut(s)	529, 569
AciI	CCGC	1 cut(s)	915
AcsI	RAATTY	2 cut(s)	641, 703
AcuI	CTGAAG	1 cut(s)	160
AcvI	CACGTG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	1 cut(s)	218
AflIII	ACRYGT	2 cut(s)	12, 527
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	194, 584, 773, 929
AluI	AGCT	4 cut(s)	194, 584, 773, 929
Alw26I	GTCTC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	826
ApoI	RAATTY	2 cut(s)	641, 703
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	2 cut(s)	872, 975
AsuHPI	GGTGA	2 cut(s)	164, 248
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	872, 975
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BanI	GGYRCC	1 cut(s)	846
BbrPI	CACGTG	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	838
BccI	CCATC	2 cut(s)	787, 859
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	3 cut(s)	191, 233, 930
BfmI	CTRYAG	1 cut(s)	697
BfoI	RGCGCY	1 cut(s)	850
BfuAI	ACCTGC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	1 cut(s)	827
BlsI	GCNGC	1 cut(s)	828
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	872, 975
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	872, 975
BmiI	GGNNCC	3 cut(s)	255, 269, 848
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	418
BsaAI	YACGTR	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	2 cut(s)	89, 947
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	89, 947
BseGI	GGATG	2 cut(s)	158, 851
BseMII	CTCAG	4 cut(s)	392, 576, 695, 717
BseXI	GCAGC	1 cut(s)	838
Bsh1236I	CGCG	2 cut(s)	529, 569
BshNI	GGYRCC	1 cut(s)	846
BsiHKCI	CYCGRG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	902
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	902
BsmI	GAATGC	2 cut(s)	120, 431
BsoBI	CYCGRG	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	548
BspACI	CCGC	1 cut(s)	915
BspCNI	CTCAG	4 cut(s)	393, 577, 694, 718
BspFNI	CGCG	2 cut(s)	529, 569
BspLI	GGNNCC	3 cut(s)	255, 269, 848
BspMI	ACCTGC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	846
BssECI	CCNNGG	2 cut(s)	89, 947
BssMI	GATC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	847
BssT1I	CCWWGG	1 cut(s)	947
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	4 cut(s)	500, 883, 922, 975
BstACI	GRCGYC	1 cut(s)	847
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	3 cut(s)	464, 567, 775
BstDEI	CTNAG	5 cut(s)	401, 585, 681, 726, 806
BstF5I	GGATG	2 cut(s)	158, 851
BstFNI	CGCG	2 cut(s)	529, 569
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	1 cut(s)	551
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	548
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 200, 590
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	3 cut(s)	39, 110, 466
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	697
BstUI	CGCG	2 cut(s)	529, 569
BstV1I	GCAGC	1 cut(s)	838
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	158, 851
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	184, 473
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	464, 567, 775
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	2 cut(s)	872, 975
CpoI	CGGWCCG	1 cut(s)	975
CseI	GACGC	2 cut(s)	582, 818
Csp6I	GTAC	1 cut(s)	217
CspI	CGGWCCG	1 cut(s)	975
CviAII	CATG	6 cut(s)	36, 103, 107, 163, 368, 463
CviJI	RGCY	5 cut(s)	194, 584, 634, 773, 929
CviKI_1	RGCY	5 cut(s)	194, 584, 634, 773, 929
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	5 cut(s)	401, 585, 681, 726, 806
DinI	GGCGCC	1 cut(s)	848
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	947
Eco32I	GATATC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	872, 975
Eco57I	CTGAAG	1 cut(s)	160
Eco72I	CACGTG	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	947
EcoT22I	ATGCAT	2 cut(s)	108, 433
EgeI	GGCGCC	1 cut(s)	848
EheI	GGCGCC	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	947
FaeI	CATG	6 cut(s)	39, 106, 110, 166, 371, 466
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	6 cut(s)	35, 102, 106, 162, 367, 462
Fnu4HI	GCNGC	1 cut(s)	827
FokI	GGATG	2 cut(s)	145, 838
Fsp4HI	GCNGC	1 cut(s)	827
FspBI	CTAG	3 cut(s)	191, 233, 930
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	1 cut(s)	827
HaeII	RGCGCY	1 cut(s)	850
HgaI	GACGC	2 cut(s)	582, 818
HhaI	GCGC	1 cut(s)	849
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	6 cut(s)	39, 106, 110, 166, 371, 466
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HinfI	GANTC	4 cut(s)	4, 155, 802, 934
HphI	GGTGA	2 cut(s)	164, 248
Hpy188I	TCNGA	7 cut(s)	546, 577, 598, 684, 727, 765, 979
Hpy188III	TCNNGA	8 cut(s)	222, 246, 390, 411, 436, 622, 671, 833
HpyAV	CCTTC	3 cut(s)	150, 762, 865
HpyCH4III	ACNGT	4 cut(s)	500, 883, 922, 975
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 200, 590
HpyF3I	CTNAG	5 cut(s)	401, 585, 681, 726, 806
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	6 cut(s)	39, 106, 110, 166, 371, 466
HspAI	GCGC	1 cut(s)	847
KasI	GGCGCC	1 cut(s)	846
Kzo9I	GATC	1 cut(s)	548
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	9 cut(s)	76, 103, 213, 231, 314, 342, 607, 616, 709
Lsp1109I	GCAGC	1 cut(s)	838
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	191, 233, 930
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	152, 688
MalI	GATC	1 cut(s)	550
MboI	GATC	1 cut(s)	548
MboII	GAAGA	5 cut(s)	221, 405, 437, 913, 929
MfeI	CAATTG	1 cut(s)	661
MflI	RGATCY	1 cut(s)	548
MluCI	AATT	6 cut(s)	43, 228, 507, 641, 661, 703
MluI	ACGCGT	1 cut(s)	527
Mly113I	GGCGCC	1 cut(s)	847
MlyI	GAGTC	2 cut(s)	149, 811
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	110, 284, 438, 752, 766, 885
Mph1103I	ATGCAT	2 cut(s)	108, 433
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	661
Mva1269I	GAATGC	2 cut(s)	120, 431
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	2 cut(s)	529, 569
MwoI	GCNNNNNNNGC	3 cut(s)	124, 200, 590
NarI	GGCGCC	1 cut(s)	847
NdeII	GATC	1 cut(s)	548
NlaIII	CATG	6 cut(s)	39, 106, 110, 166, 371, 466
NlaIV	GGNNCC	3 cut(s)	255, 269, 848
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	2 cut(s)	108, 433
NspI	RCATGY	3 cut(s)	39, 110, 466
PaeI	GCATGC	1 cut(s)	466
PaeR7I	CTCGAG	1 cut(s)	220
PctI	GAATGC	2 cut(s)	120, 431
PfeI	GAWTC	2 cut(s)	4, 934
PkrI	GCNGC	1 cut(s)	828
PleI	GAGTC	2 cut(s)	149, 810
PluTI	GGCGCC	1 cut(s)	850
PmaCI	CACGTG	1 cut(s)	13
PmlI	CACGTG	1 cut(s)	13
PpsI	GAGTC	2 cut(s)	149, 810
Ppu21I	YACGTR	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	89
PspCI	CACGTG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	255, 269, 848
PspPI	GGNCC	2 cut(s)	872, 975
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
Rsr2I	CGGWCCG	1 cut(s)	975
RsrII	CGGWCCG	1 cut(s)	975
SatI	GCNGC	1 cut(s)	827
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	2 cut(s)	872, 975
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	2 cut(s)	149, 811
ScrFI	CCNGG	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	697
SfoI	GGCGCC	1 cut(s)	848
Sfr274I	CTCGAG	1 cut(s)	220
SinI	GGWCC	2 cut(s)	872, 975
SlaI	CTCGAG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SphI	GCATGC	1 cut(s)	466
Sse9I	AATT	6 cut(s)	43, 228, 507, 641, 661, 703
SsiI	CCGC	1 cut(s)	915
SspDI	GGCGCC	1 cut(s)	846
SspMI	CTAG	3 cut(s)	191, 233, 930
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	947
TaaI	ACNGT	4 cut(s)	500, 883, 922, 975
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	4 cut(s)	221, 391, 410, 437
TasI	AATT	6 cut(s)	43, 228, 507, 641, 661, 703
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	4, 934
TscAI	CASTG	2 cut(s)	184, 473
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	826
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	17, 914
TspRI	CASTG	2 cut(s)	184, 473
VpaK11BI	GGWCC	2 cut(s)	872, 975
XapI	RAATTY	2 cut(s)	641, 703
XceI	RCATGY	3 cut(s)	39, 110, 466
XhoI	CTCGAG	1 cut(s)	220
XspI	CTAG	3 cut(s)	191, 233, 930
ZrmI	AGTACT	1 cut(s)	218
Zsp2I	ATGCAT	2 cut(s)	108, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.