pycom436g00350

Nudix hydrolase 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_436
OG0000120
Physical Location & Seq
Forward (+)
384822 .. 385613
792 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom436g00350.1

Sequence Viewer

Length: 744 bp
ATGGCAAACCCATCGAACCTTAGCTTAGAATTGAGTCTCAGCAGTGATACGGGCGCGCCGCGTCAAGGTAACGTATGGCGCCCTTCTTTCTTATCTTCTAACGGTCCTCTTACAGGTGAAGACTCTGTGATGCAGGACGCCACAACAGCTACAATAGTAGCTAGGAACCTCCTCACTCCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGGGTCCCTCGCACTTAGTGTTCAGTGTGCGAGTTCTGTGTCCAACATGGGCCAACGCCTGCTTGCCCGCTCCCGTCAGGTGAAATCATTGATGGCGGAGGTGGAAAGTCTTAAGCAAGAGATCAAACTGCTTAAGTACGAGAATAGAAGTTTGCATGTGCTTGCAAATAACTATTCATCGGGCATGAAGAGGAAGCTTGATGAGCTGCAAGAATCCAATGGTCGAATGCAAAGTGACCGTCAAAGGCTTGCGGCTTTCTTCCAGAGGCATATTTTTCCTGGCTCATCTAGCGTTCCACCAAGTATTGAGGCCTCTTCTTCGATGCCTCCCACTCCGATGCCTTCTGCTCCGATGCCTTCCGCTCCGATGCCTTCCGCTCCGATGCCTCGTAGTGGGTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACAAATCAAACGGCATGGAATTGGTCCTTGAATGGAAGGTGATAATTGAAGTGAACCGGCATTGGTTTGAATTCTAG

Protein Analysis

248

Amino Acids

27.5

Weight (kDa)

9.51

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AccBSI CCGCTC 3 cut(s) 297, 590, 605
AccII CGCG 2 cut(s) 56, 61
AciI CCGC 6 cut(s) 59, 295, 323, 479, 588, 603
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 737
AcyI GRCGYC 2 cut(s) 79, 138
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 4 cut(s) 65, 113, 228, 620
AflII CTTAAG 2 cut(s) 338, 359
AgsI TTSAA 4 cut(s) 227, 698, 716, 737
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 5 cut(s) 24, 149, 161, 424, 433
AluI AGCT 5 cut(s) 24, 149, 161, 424, 433
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 3 cut(s) 219, 277, 537
ApeKI GCWGC 2 cut(s) 193, 433
ApoI RAATTY 1 cut(s) 737
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AscI GGCGCGCC 1 cut(s) 54
AspLEI GCGC 3 cut(s) 56, 58, 81
AspS9I GGNCC 5 cut(s) 104, 207, 231, 277, 691
AsuHPI GGTGA 3 cut(s) 128, 319, 718
AvaII GGWCC 4 cut(s) 104, 207, 231, 691
BanI GGYRCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 180, 420
BccI CCATC 2 cut(s) 19, 313
BceAI ACGGC 2 cut(s) 206, 694
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 3 cut(s) 162, 516, 742
BfoI RGCGCY 1 cut(s) 82
BfrI CTTAAG 2 cut(s) 338, 359
BisI GCNGC 4 cut(s) 59, 194, 434, 480
BlsI GCNGC 4 cut(s) 60, 195, 435, 481
Bme1390I CCNGG 1 cut(s) 507
Bme18I GGWCC 4 cut(s) 104, 207, 231, 691
BmgT120I GGNCC 5 cut(s) 104, 207, 231, 277, 691
BmiI GGNNCC 4 cut(s) 80, 167, 232, 233
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 6 cut(s) 120, 540, 555, 570, 585, 600
BpiI GAAGAC 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 20
BsaHI GRCGYC 2 cut(s) 79, 138
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 113, 228, 620
Bse118I RCCGGY 1 cut(s) 723
BseBI CCWGG 1 cut(s) 507
BseLI CCNNNNNNNGG 4 cut(s) 65, 113, 228, 620
BseMII CTCAG 1 cut(s) 52
BsePI GCGCGC 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 180, 420
Bsh1236I CGCG 2 cut(s) 56, 61
BshFI GGCC 3 cut(s) 221, 279, 539
BshNI GGYRCC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 724
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 4 cut(s) 65, 113, 228, 620
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 459
BsnI GGCC 3 cut(s) 221, 279, 539
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 6 cut(s) 59, 295, 323, 479, 588, 603
BspANI GGCC 3 cut(s) 221, 279, 539
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 2 cut(s) 56, 61
BspLI GGNNCC 4 cut(s) 80, 167, 232, 233
BspT107I GGYRCC 1 cut(s) 78
BspTI CTTAAG 2 cut(s) 338, 359
BsrBI CCGCTC 3 cut(s) 297, 590, 605
BsrFI RCCGGY 1 cut(s) 723
BssAI RCCGGY 1 cut(s) 723
BssHII GCGCGC 1 cut(s) 54
BssMI GATC 1 cut(s) 348
BssNI GRCGYC 2 cut(s) 79, 138
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 104, 207, 467
Bst6I CTCTTC 2 cut(s) 410, 547
BstACI GRCGYC 2 cut(s) 79, 138
BstAFI CTTAAG 2 cut(s) 338, 359
BstC8I GCNNGC 6 cut(s) 56, 287, 291, 295, 390, 477
BstDEI CTNAG 4 cut(s) 20, 25, 38, 242
BstENI CCTNNNNNAGG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 56, 61
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 56, 58, 81
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 3 cut(s) 146, 430, 516
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 505
BstUI CGCG 2 cut(s) 56, 61
BstV1I GCAGC 2 cut(s) 180, 420
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 221, 279, 539
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 257
Cac8I GCNNGC 6 cut(s) 56, 287, 291, 295, 390, 477
CfoI GCGC 3 cut(s) 56, 58, 81
Cfr10I RCCGGY 1 cut(s) 723
Cfr13I GGNCC 5 cut(s) 104, 207, 231, 277, 691
CpoI CGGWCCG 1 cut(s) 207
CseI GACGC 2 cut(s) 50, 146
Csp6I GTAC 1 cut(s) 364
CspI CGGWCCG 1 cut(s) 207
CviAII CATG 4 cut(s) 274, 383, 412, 682
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 4 cut(s) 20, 25, 38, 242
DinI GGCGCC 1 cut(s) 80
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
DraI TTTAAA 1 cut(s) 663
DraIII CACNNNGTG 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 410, 547
EarI CTCTTC 2 cut(s) 410, 547
EciI GGCGGA 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 539
Eco47I GGWCC 4 cut(s) 104, 207, 231, 691
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 505
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
FaeI CATG 4 cut(s) 277, 386, 415, 685
FaiI YATR 6 cut(s) 76, 275, 384, 413, 498, 683
FaqI GGGAC 1 cut(s) 217
FatI CATG 4 cut(s) 273, 382, 411, 681
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 4 cut(s) 59, 194, 434, 480
Fsp4HI GCNGC 4 cut(s) 59, 194, 434, 480
FspBI CTAG 3 cut(s) 162, 516, 742
GlaI GCGC 3 cut(s) 55, 57, 80
GluI GCNGC 4 cut(s) 59, 194, 434, 480
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 3 cut(s) 221, 279, 539
HapII CCGG 1 cut(s) 724
HgaI GACGC 2 cut(s) 50, 146
HhaI GCGC 3 cut(s) 56, 58, 81
Hin1I GRCGYC 2 cut(s) 79, 138
Hin1II CATG 4 cut(s) 277, 386, 415, 685
Hin6I GCGC 3 cut(s) 54, 56, 79
HinP1I GCGC 3 cut(s) 54, 56, 79
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 3 cut(s) 34, 122, 440
HpaII CCGG 1 cut(s) 724
HphI GGTGA 3 cut(s) 128, 319, 718
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 5 cut(s) 211, 564, 579, 594, 609
Hpy188III TCNNGA 2 cut(s) 201, 490
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 5 cut(s) 93, 579, 594, 609, 697
HpyCH4III ACNGT 3 cut(s) 104, 207, 467
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 133, 382, 392, 436, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 430, 516
HpyF3I CTNAG 4 cut(s) 20, 25, 38, 242
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 79, 138
Hsp92II CATG 4 cut(s) 277, 386, 415, 685
HspAI GCGC 3 cut(s) 54, 56, 79
KasI GGCGCC 1 cut(s) 78
KflI GGGWCCC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 4 cut(s) 302, 580, 595, 610
LpnPI CCDG 9 cut(s) 99, 119, 186, 290, 299, 492, 503, 519, 737
Lsp1109I GCAGC 2 cut(s) 180, 420
LweI GCATC 6 cut(s) 120, 540, 555, 570, 585, 600
MaeI CTAG 3 cut(s) 162, 516, 742
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 68, 461
MalI GATC 1 cut(s) 350
MbiI CCGCTC 3 cut(s) 297, 590, 605
MboI GATC 1 cut(s) 348
MboII GAAGA 6 cut(s) 87, 131, 427, 478, 534, 537
MluCI AATT 4 cut(s) 29, 686, 711, 737
Mly113I GGCGCC 1 cut(s) 79
MlyI GAGTC 2 cut(s) 43, 116
MmeI TCCRAC 1 cut(s) 294
MseI TTAA 3 cut(s) 339, 360, 662
MslI CAYNNNNRTG 1 cut(s) 563
MspCI CTTAAG 2 cut(s) 338, 359
MspI CCGG 1 cut(s) 724
MspR9I CCNGG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 459
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 2 cut(s) 56, 61
MwoI GCNNNNNNNGC 3 cut(s) 146, 430, 516
NarI GGCGCC 1 cut(s) 79
NdeII GATC 1 cut(s) 348
NlaIII CATG 4 cut(s) 277, 386, 415, 685
NlaIV GGNNCC 4 cut(s) 80, 167, 232, 233
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 1 cut(s) 386
PalAI GGCGCGCC 1 cut(s) 54
PauI GCGCGC 1 cut(s) 54
PceI AGGCCT 1 cut(s) 539
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 4 cut(s) 60, 195, 435, 481
PleI GAGTC 2 cut(s) 42, 116
PluTI GGCGCC 1 cut(s) 82
PpsI GAGTC 2 cut(s) 42, 116
PpuMI RGGWCCY 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 4 cut(s) 80, 167, 232, 233
PspPI GGNCC 5 cut(s) 104, 207, 231, 277, 691
PspPPI RGGWCCY 1 cut(s) 231
PteI GCGCGC 1 cut(s) 54
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 563
Rsr2I CGGWCCG 1 cut(s) 207
RsrII CGGWCCG 1 cut(s) 207
SaqAI TTAA 3 cut(s) 339, 360, 662
SatI GCNGC 4 cut(s) 59, 194, 434, 480
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 5 cut(s) 104, 207, 231, 277, 691
SchI GAGTC 2 cut(s) 43, 116
ScrFI CCNGG 1 cut(s) 507
SfaNI GCATC 6 cut(s) 120, 540, 555, 570, 585, 600
SfoI GGCGCC 1 cut(s) 80
SgsI GGCGCGCC 1 cut(s) 54
SinI GGWCC 4 cut(s) 104, 207, 231, 691
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 338, 359
SmoI CTYRAG 2 cut(s) 338, 359
Sse9I AATT 4 cut(s) 29, 686, 711, 737
SseBI AGGCCT 1 cut(s) 539
SsiI CCGC 6 cut(s) 59, 295, 323, 479, 588, 603
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 3 cut(s) 162, 516, 742
StuI AGGCCT 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 505
TaaI ACNGT 3 cut(s) 104, 207, 467
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 14, 451, 548
TasI AATT 4 cut(s) 29, 686, 711, 737
TauI GCSGC 2 cut(s) 61, 482
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 339, 360, 662
Tru9I TTAA 3 cut(s) 339, 360, 662
TscAI CASTG 2 cut(s) 49, 257
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 193, 433
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 393, 428
TspRI CASTG 2 cut(s) 49, 257
Vha464I CTTAAG 2 cut(s) 338, 359
VpaK11BI GGWCC 4 cut(s) 104, 207, 231, 691
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 737
XceI RCATGY 1 cut(s) 386
XspI CTAG 3 cut(s) 162, 516, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.