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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1179 |
| Acc36I | ACCTGC | 1 cut(s) | 1315 |
| AccB1I | GGYRCC | 3 cut(s) | 850, 1705, 2113 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2188 |
| AciI | CCGC | 3 cut(s) | 582, 1478, 1700 |
| AclWI | GGATC | 4 cut(s) | 367, 808, 1808, 2151 |
| AcyI | GRCGYC | 1 cut(s) | 851 |
| AfaI | GTAC | 1 cut(s) | 1327 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 97, 262, 860, 971, 1160, 1544, 1675, 1680, 2188 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AluBI | AGCT | 1 cut(s) | 1988 |
| AluI | AGCT | 1 cut(s) | 1988 |
| Alw21I | GWGCWC | 1 cut(s) | 2049 |
| Alw26I | GTCTC | 3 cut(s) | 1377, 1494, 1910 |
| AlwI | GGATC | 4 cut(s) | 367, 808, 1808, 2151 |
| ApeKI | GCWGC | 5 cut(s) | 101, 1087, 1120, 1261, 1294 |
| AseI | ATTAAT | 2 cut(s) | 210, 1199 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1848 |
| AspLEI | GCGC | 1 cut(s) | 853 |
| AspS9I | GGNCC | 2 cut(s) | 945, 1447 |
| AsuC2I | CCSGG | 1 cut(s) | 861 |
| AsuHPI | GGTGA | 4 cut(s) | 1354, 1838, 2150, 2357 |
| AsuII | TTCGAA | 1 cut(s) | 1842 |
| AvaII | GGWCC | 2 cut(s) | 945, 1447 |
| BanI | GGYRCC | 3 cut(s) | 850, 1705, 2113 |
| BanII | GRGCYC | 2 cut(s) | 1220, 2195 |
| Bbv12I | GWGCWC | 1 cut(s) | 2049 |
| BbvI | GCAGC | 5 cut(s) | 113, 1099, 1132, 1273, 1306 |
| BccI | CCATC | 4 cut(s) | 60, 256, 1618, 1732 |
| BceAI | ACGGC | 2 cut(s) | 838, 1692 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 1030 |
| BcnI | CCSGG | 1 cut(s) | 861 |
| BcoDI | GTCTC | 3 cut(s) | 1377, 1494, 1910 |
| BfaI | CTAG | 6 cut(s) | 138, 807, 1764, 1889, 1985, 1998 |
| BfoI | RGCGCY | 1 cut(s) | 854 |
| BfuAI | ACCTGC | 1 cut(s) | 1315 |
| BglII | AGATCT | 1 cut(s) | 674 |
| BisI | GCNGC | 6 cut(s) | 102, 1088, 1121, 1262, 1295, 1700 |
| BlsI | GCNGC | 6 cut(s) | 103, 1089, 1122, 1263, 1296, 1701 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 861 |
| Bme18I | GGWCC | 2 cut(s) | 945, 1447 |
| BmgT120I | GGNCC | 2 cut(s) | 945, 1447 |
| BmiI | GGNNCC | 6 cut(s) | 121, 852, 946, 1707, 2115, 2194 |
| BmrFI | CCNGG | 2 cut(s) | 127, 861 |
| BmsI | GCATC | 1 cut(s) | 1845 |
| BpmI | CTGGAG | 1 cut(s) | 148 |
| Bpu14I | TTCGAA | 1 cut(s) | 1842 |
| BpuEI | CTTGAG | 4 cut(s) | 50, 1594, 1934, 2051 |
| BpuMI | CCSGG | 1 cut(s) | 861 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1179 |
| BsaHI | GRCGYC | 1 cut(s) | 851 |
| BsaI | GGTCTC | 1 cut(s) | 1494 |
| BsaJI | CCNNGG | 5 cut(s) | 860, 1504, 1560, 1674, 1812 |
| BsaWI | WCCGGW | 2 cut(s) | 493, 2140 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 97, 262, 860, 971, 1160, 1544, 1675, 1680, 2188 |
| Bse1I | ACTGG | 1 cut(s) | 216 |
| Bse3DI | GCAATG | 3 cut(s) | 1407, 1428, 1527 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1179 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 5 cut(s) | 860, 1504, 1560, 1674, 1812 |
| BseGI | GGATG | 1 cut(s) | 52 |
| BseJI | GATNNNNATC | 1 cut(s) | 1179 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 97, 262, 860, 971, 1160, 1544, 1675, 1680, 2188 |
| BseMI | GCAATG | 3 cut(s) | 1407, 1428, 1527 |
| BseMII | CTCAG | 2 cut(s) | 1173, 1388 |
| BseNI | ACTGG | 1 cut(s) | 216 |
| BseRI | GAGGAG | 3 cut(s) | 1112, 1286, 2055 |
| BseXI | GCAGC | 5 cut(s) | 113, 1099, 1132, 1273, 1306 |
| BseYI | CCCAGC | 2 cut(s) | 801, 1877 |
| BsgI | GTGCAG | 1 cut(s) | 1232 |
| BshNI | GGYRCC | 3 cut(s) | 850, 1705, 2113 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2049 |
| BsiSI | CCGG | 3 cut(s) | 494, 860, 2141 |
| BslFI | GGGAC | 5 cut(s) | 423, 773, 947, 1769, 1968 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 97, 262, 860, 971, 1160, 1544, 1675, 1680, 2188 |
| BsmAI | GTCTC | 3 cut(s) | 1377, 1494, 1910 |
| BsmFI | GGGAC | 5 cut(s) | 423, 773, 947, 1769, 1968 |
| BsmI | GAATGC | 2 cut(s) | 245, 427 |
| Bso31I | GGTCTC | 1 cut(s) | 1494 |
| Bsp119I | TTCGAA | 1 cut(s) | 1842 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1220, 2049, 2195 |
| Bsp143I | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| BspACI | CCGC | 3 cut(s) | 582, 1478, 1700 |
| BspCNI | CTCAG | 2 cut(s) | 1172, 1387 |
| BspLI | GGNNCC | 6 cut(s) | 121, 852, 946, 1707, 2115, 2194 |
| BspMI | ACCTGC | 1 cut(s) | 1315 |
| BspPI | GGATC | 4 cut(s) | 367, 808, 1808, 2151 |
| BspT104I | TTCGAA | 1 cut(s) | 1842 |
| BspT107I | GGYRCC | 3 cut(s) | 850, 1705, 2113 |
| BspTNI | GGTCTC | 1 cut(s) | 1494 |
| BsrDI | GCAATG | 3 cut(s) | 1407, 1428, 1527 |
| BsrI | ACTGG | 1 cut(s) | 216 |
| BssECI | CCNNGG | 5 cut(s) | 860, 1504, 1560, 1674, 1812 |
| BssMI | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| BssNI | GRCGYC | 1 cut(s) | 851 |
| BssT1I | CCWWGG | 3 cut(s) | 1504, 1560, 1812 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 4 cut(s) | 257, 450, 933, 1604 |
| Bst6I | CTCTTC | 1 cut(s) | 1650 |
| BstACI | GRCGYC | 1 cut(s) | 851 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1712, 2223 |
| BstBI | TTCGAA | 1 cut(s) | 1842 |
| BstC8I | GCNNGC | 1 cut(s) | 1704 |
| BstDEI | CTNAG | 4 cut(s) | 671, 1159, 1374, 2514 |
| BstDSI | CCRYGG | 1 cut(s) | 1674 |
| BstF5I | GGATG | 1 cut(s) | 52 |
| BstH2I | RGCGCY | 1 cut(s) | 854 |
| BstHHI | GCGC | 1 cut(s) | 853 |
| BstKTI | GATC | 8 cut(s) | 375, 677, 816, 1033, 1803, 2146, 2176, 2441 |
| BstMAI | GTCTC | 3 cut(s) | 1377, 1494, 1910 |
| BstMBI | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1120, 1468, 1712, 2223 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstSCI | CCNGG | 2 cut(s) | 125, 859 |
| BstV1I | GCAGC | 5 cut(s) | 113, 1099, 1132, 1273, 1306 |
| BstX2I | RGATCY | 1 cut(s) | 674 |
| BstYI | RGATCY | 1 cut(s) | 674 |
| BtgI | CCRYGG | 1 cut(s) | 1674 |
| BtsCI | GGATG | 1 cut(s) | 52 |
| BveI | ACCTGC | 1 cut(s) | 1315 |
| Cac8I | GCNNGC | 1 cut(s) | 1704 |
| CfoI | GCGC | 1 cut(s) | 853 |
| Cfr13I | GGNCC | 2 cut(s) | 945, 1447 |
| Csp6I | GTAC | 1 cut(s) | 1326 |
| CviQI | GTAC | 1 cut(s) | 1326 |
| DdeI | CTNAG | 4 cut(s) | 671, 1159, 1374, 2514 |
| DinI | GGCGCC | 1 cut(s) | 852 |
| DpnI | GATC | 8 cut(s) | 374, 676, 815, 1032, 1802, 2145, 2175, 2440 |
| DpnII | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| DraI | TTTAAA | 2 cut(s) | 2131, 2457 |
| Eam1104I | CTCTTC | 1 cut(s) | 1650 |
| EarI | CTCTTC | 1 cut(s) | 1650 |
| Eco130I | CCWWGG | 3 cut(s) | 1504, 1560, 1812 |
| Eco24I | GRGCYC | 2 cut(s) | 1220, 2195 |
| Eco31I | GGTCTC | 1 cut(s) | 1494 |
| Eco47I | GGWCC | 2 cut(s) | 945, 1447 |
| EcoRI | GAATTC | 2 cut(s) | 1729, 1892 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoT14I | CCWWGG | 3 cut(s) | 1504, 1560, 1812 |
| EcoT22I | ATGCAT | 2 cut(s) | 245, 2228 |
| EcoT38I | GRGCYC | 2 cut(s) | 1220, 2195 |
| EgeI | GGCGCC | 1 cut(s) | 852 |
| EheI | GGCGCC | 1 cut(s) | 852 |
| ErhI | CCWWGG | 3 cut(s) | 1504, 1560, 1812 |
| FaqI | GGGAC | 5 cut(s) | 423, 773, 947, 1769, 1968 |
| FauNDI | CATATG | 2 cut(s) | 1093, 1267 |
| FbaI | TGATCA | 1 cut(s) | 1030 |
| Fnu4HI | GCNGC | 6 cut(s) | 102, 1088, 1121, 1262, 1295, 1700 |
| FokI | GGATG | 1 cut(s) | 39 |
| FriOI | GRGCYC | 2 cut(s) | 1220, 2195 |
| Fsp4HI | GCNGC | 6 cut(s) | 102, 1088, 1121, 1262, 1295, 1700 |
| FspBI | CTAG | 6 cut(s) | 138, 807, 1764, 1889, 1985, 1998 |
| GlaI | GCGC | 1 cut(s) | 852 |
| GluI | GCNGC | 6 cut(s) | 102, 1088, 1121, 1262, 1295, 1700 |
| GsaI | CCCAGC | 2 cut(s) | 805, 1881 |
| GsuI | CTGGAG | 1 cut(s) | 148 |
| HaeII | RGCGCY | 1 cut(s) | 854 |
| HapII | CCGG | 3 cut(s) | 494, 860, 2141 |
| HhaI | GCGC | 1 cut(s) | 853 |
| Hin1I | GRCGYC | 1 cut(s) | 851 |
| Hin6I | GCGC | 1 cut(s) | 851 |
| HinP1I | GCGC | 1 cut(s) | 851 |
| HpaII | CCGG | 3 cut(s) | 494, 860, 2141 |
| HphI | GGTGA | 4 cut(s) | 1354, 1838, 2150, 2357 |
| Hpy166II | GTNNAC | 3 cut(s) | 948, 1013, 1607 |
| Hpy188I | TCNGA | 4 cut(s) | 484, 1539, 2044, 2414 |
| Hpy188III | TCNNGA | 9 cut(s) | 67, 1412, 1433, 1499, 1573, 1862, 1889, 2030, 2123 |
| Hpy8I | GTNNAC | 3 cut(s) | 948, 1013, 1607 |
| HpyAV | CCTTC | 6 cut(s) | 103, 110, 935, 1817, 2009, 2171 |
| HpyCH4III | ACNGT | 4 cut(s) | 257, 450, 933, 1604 |
| HpyCH4IV | ACGT | 2 cut(s) | 366, 1328 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1120, 1468, 1712, 2223 |
| HpyF3I | CTNAG | 4 cut(s) | 671, 1159, 1374, 2514 |
| HpySE526I | ACGT | 2 cut(s) | 366, 1328 |
| Hsp92I | GRCGYC | 1 cut(s) | 851 |
| HspAI | GCGC | 1 cut(s) | 851 |
| KasI | GGCGCC | 1 cut(s) | 850 |
| Ksp22I | TGATCA | 1 cut(s) | 1030 |
| Kzo9I | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| LmnI | GCTCC | 5 cut(s) | 119, 129, 1720, 2044, 2198 |
| Lsp1109I | GCAGC | 5 cut(s) | 113, 1099, 1132, 1273, 1306 |
| LweI | GCATC | 1 cut(s) | 1845 |
| MaeI | CTAG | 6 cut(s) | 138, 807, 1764, 1889, 1985, 1998 |
| MaeII | ACGT | 2 cut(s) | 366, 1328 |
| MaeIII | GTNAC | 4 cut(s) | 302, 444, 927, 1356 |
| MalI | GATC | 8 cut(s) | 374, 676, 815, 1032, 1802, 2145, 2175, 2440 |
| MboI | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| MboII | GAAGA | 9 cut(s) | 125, 430, 544, 648, 1643, 1667, 1829, 1831, 1832 |
| MflI | RGATCY | 1 cut(s) | 674 |
| MhlI | GDGCHC | 3 cut(s) | 1220, 2049, 2195 |
| Mly113I | GGCGCC | 1 cut(s) | 851 |
| MlyI | GAGTC | 7 cut(s) | 644, 676, 703, 724, 773, 2327, 2492 |
| MmeI | TCCRAC | 2 cut(s) | 1425, 2022 |
| Mph1103I | ATGCAT | 2 cut(s) | 245, 2228 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1848 |
| MslI | CAYNNNNRTG | 1 cut(s) | 344 |
| MspI | CCGG | 3 cut(s) | 494, 860, 2141 |
| MspR9I | CCNGG | 2 cut(s) | 127, 861 |
| Mva1269I | GAATGC | 2 cut(s) | 245, 427 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1120, 1468, 1712, 2223 |
| NarI | GGCGCC | 1 cut(s) | 851 |
| NciI | CCSGG | 1 cut(s) | 861 |
| NdeI | CATATG | 2 cut(s) | 1093, 1267 |
| NdeII | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| NlaIV | GGNNCC | 6 cut(s) | 121, 852, 946, 1707, 2115, 2194 |
| NmuCI | GTSAC | 2 cut(s) | 444, 927 |
| NsiI | ATGCAT | 2 cut(s) | 245, 2228 |
| NspV | TTCGAA | 1 cut(s) | 1842 |
| PctI | GAATGC | 2 cut(s) | 245, 427 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1848 |
| PfeI | GAWTC | 4 cut(s) | 535, 1844, 1858, 2107 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2188 |
| PkrI | GCNGC | 6 cut(s) | 103, 1089, 1122, 1263, 1296, 1701 |
| PleI | GAGTC | 7 cut(s) | 643, 675, 702, 723, 772, 2326, 2491 |
| PluTI | GGCGCC | 1 cut(s) | 854 |
| PpsI | GAGTC | 7 cut(s) | 643, 675, 702, 723, 772, 2326, 2491 |
| PshBI | ATTAAT | 2 cut(s) | 210, 1199 |
| PsiI | TTATAA | 1 cut(s) | 1179 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspFI | CCCAGC | 2 cut(s) | 801, 1877 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 6 cut(s) | 121, 852, 946, 1707, 2115, 2194 |
| PspPI | GGNCC | 2 cut(s) | 945, 1447 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 802, 834 |
| PsuI | RGATCY | 1 cut(s) | 674 |
| RsaI | GTAC | 1 cut(s) | 1327 |
| RsaNI | GTAC | 1 cut(s) | 1326 |
| RseI | CAYNNNNRTG | 1 cut(s) | 344 |
| SatI | GCNGC | 6 cut(s) | 102, 1088, 1121, 1262, 1295, 1700 |
| Sau3AI | GATC | 8 cut(s) | 372, 674, 813, 1030, 1800, 2143, 2173, 2438 |
| Sau96I | GGNCC | 2 cut(s) | 945, 1447 |
| SchI | GAGTC | 7 cut(s) | 644, 676, 703, 724, 773, 2327, 2492 |
| ScrFI | CCNGG | 2 cut(s) | 127, 861 |
| SduI | GDGCHC | 3 cut(s) | 1220, 2049, 2195 |
| SfaNI | GCATC | 1 cut(s) | 1845 |
| SfoI | GGCGCC | 1 cut(s) | 852 |
| SfuI | TTCGAA | 1 cut(s) | 1842 |
| SinI | GGWCC | 2 cut(s) | 945, 1447 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 344 |
| SmlI | CTYRAG | 4 cut(s) | 65, 1573, 1913, 2030 |
| SmoI | CTYRAG | 4 cut(s) | 65, 1573, 1913, 2030 |
| SsiI | CCGC | 3 cut(s) | 582, 1478, 1700 |
| SspDI | GGCGCC | 1 cut(s) | 850 |
| SspI | AATATT | 1 cut(s) | 1256 |
| SspMI | CTAG | 6 cut(s) | 138, 807, 1764, 1889, 1985, 1998 |
| StyD4I | CCNGG | 2 cut(s) | 125, 859 |
| StyI | CCWWGG | 3 cut(s) | 1504, 1560, 1812 |
| TaaI | ACNGT | 4 cut(s) | 257, 450, 933, 1604 |
| TaiI | ACGT | 2 cut(s) | 369, 1331 |
| TaqI | TCGA | 4 cut(s) | 1498, 1727, 1842, 2441 |
| TauI | GCSGC | 1 cut(s) | 1702 |
| TfiI | GAWTC | 4 cut(s) | 535, 1844, 1858, 2107 |
| TseFI | GTSAC | 2 cut(s) | 444, 927 |
| TseI | GCWGC | 5 cut(s) | 101, 1087, 1120, 1261, 1294 |
| Tsp45I | GTSAC | 2 cut(s) | 444, 927 |
| TspDTI | ATGAA | 9 cut(s) | 216, 217, 461, 763, 1209, 1650, 1885, 2026, 2214 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2188 |
| VpaK11BI | GGWCC | 2 cut(s) | 945, 1447 |
| VspI | ATTAAT | 2 cut(s) | 210, 1199 |
| XbaI | TCTAGA | 1 cut(s) | 1888 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1681 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1848 |
| XspI | CTAG | 6 cut(s) | 138, 807, 1764, 1889, 1985, 1998 |
| Zsp2I | ATGCAT | 2 cut(s) | 245, 2228 |