Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001681

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Reverse (-)

44153 .. 50957

Gene Structure 6805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1681g00030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAGGACGCCACAACAGCTACAATAGTAGCTAGGAACCTCCTCACACCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGAGTCCCTTGCACTTAGTGTTCAGTGTGCGAGTTCTGTGTCCAACATGGGCCAACGCCTGCTTGCCCGCTCCCGTCAGGTGGAATCATTGATGGCAGAGGTGGAAAGTCTCAAGGATAAAGTAATGGCTCGAATCAAACTGCTTAAGCATGAGAATAGAAGTTTGCACGTACTTGCCAACAACTATTCGACGGGCATGAAGAGGAAGCTTGATGAGCTGCAAGAATCTGAAGGTCGAATTCACAATGACCGTCAAAGGCTTGCGTCTTATCTCCAGAGGCACCTTTTTCCTGGGTCATCCAGCGCTTGGCCAAGTATTGAGGCCTGGAATGCTCTAGCTCCGATGCCTCCCGCTCCGATGGCTTCCGCTCCGATGCCTCCCGCTTCTATGCCTCCCGCTTCTGCGCCTTCCGCTTCTGCGCCTCGTAGTGGGGCTTCACGTAAACAACCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

185

Amino Acids

20.01

Weight (kDa)

9.99

Isoelectric Point (pI)

67.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	405
AccBSI	CCGCTC	3 cut(s)	168, 452, 467
AciI	CCGC	6 cut(s)	166, 450, 465, 480, 495, 510
AcoI	YGGCCR	2 cut(s)	90, 407
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	270
AfeI	AGCGCT	1 cut(s)	403
AfiI	CCNNNNNNNGG	3 cut(s)	178, 405, 527
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	388, 422
AluBI	AGCT	5 cut(s)	20, 32, 307, 316, 437
AluI	AGCT	5 cut(s)	20, 32, 307, 316, 437
Alw26I	GTCTC	1 cut(s)	212
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	4 cut(s)	90, 148, 407, 420
ApeKI	GCWGC	2 cut(s)	64, 316
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	3 cut(s)	404, 505, 520
AspS9I	GGNCC	2 cut(s)	78, 148
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BbvI	GCAGC	2 cut(s)	51, 303
BccI	CCATC	2 cut(s)	184, 451
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	390, 424
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	33, 434
BfoI	RGCGCY	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	65, 317
BlsI	GCNGC	2 cut(s)	66, 318
Bme1390I	CCNGG	2 cut(s)	390, 424
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	78, 148
BmiI	GGNNCC	2 cut(s)	38, 380
BmrFI	CCNGG	2 cut(s)	390, 424
BmsI	GCATC	2 cut(s)	432, 462
BpmI	CTGGAG	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	194
BsaAI	YACGTR	2 cut(s)	268, 539
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 405, 527
BseBI	CCWGG	2 cut(s)	390, 424
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	178, 405, 527
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	51, 303
BshFI	GGCC	4 cut(s)	92, 150, 409, 422
BshNI	GGYRCC	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	178, 405, 527
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	92, 150, 409, 422
BspACI	CCGC	6 cut(s)	166, 450, 465, 480, 495, 510
BspANI	GGCC	4 cut(s)	92, 150, 409, 422
BspLI	GGNNCC	2 cut(s)	38, 380
BspT107I	GGYRCC	1 cut(s)	378
BspTI	CTTAAG	1 cut(s)	242
BsrBI	CCGCTC	3 cut(s)	168, 452, 467
BssECI	CCNNGG	1 cut(s)	389
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	390, 424
Bst4CI	ACNGT	2 cut(s)	78, 350
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	242
BstBAI	YACGTR	2 cut(s)	268, 539
BstC8I	GCNNGC	4 cut(s)	158, 162, 166, 360
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	3 cut(s)	404, 505, 520
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 313, 428, 458, 509
BstNI	CCWGG	2 cut(s)	390, 424
BstSCI	CCNGG	2 cut(s)	388, 422
BstV1I	GCAGC	2 cut(s)	51, 303
BsuRI	GGCC	4 cut(s)	92, 150, 409, 422
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	158, 162, 166, 360
CfoI	GCGC	3 cut(s)	404, 505, 520
Cfr13I	GGNCC	2 cut(s)	78, 148
CpoI	CGGWCCG	1 cut(s)	78
CseI	GACGC	2 cut(s)	17, 351
Csp6I	GTAC	1 cut(s)	269
CspI	CGGWCCG	1 cut(s)	78
CviAII	CATG	3 cut(s)	145, 248, 295
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	113
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	2 cut(s)	90, 407
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco147I	AGGCCT	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	78
Eco47III	AGCGCT	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	388, 422
FaeI	CATG	3 cut(s)	148, 251, 298
FaiI	YATR	4 cut(s)	146, 249, 296, 488
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	144, 247, 294
FauI	CCCGC	4 cut(s)	173, 457, 487, 502
Fnu4HI	GCNGC	2 cut(s)	65, 317
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	65, 317
FspBI	CTAG	2 cut(s)	33, 434
GlaI	GCGC	3 cut(s)	403, 504, 519
GluI	GCNGC	2 cut(s)	65, 317
GsuI	CTGGAG	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	92, 150, 409, 422
HgaI	GACGC	2 cut(s)	17, 351
HhaI	GCGC	3 cut(s)	404, 505, 520
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	148, 251, 298
Hin6I	GCGC	3 cut(s)	402, 503, 518
HinP1I	GCGC	3 cut(s)	402, 503, 518
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	101, 182, 231, 323
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	5 cut(s)	82, 328, 441, 456, 471
Hpy188III	TCNNGA	3 cut(s)	72, 98, 373
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	323, 516
HpyCH4III	ACNGT	2 cut(s)	78, 350
HpyCH4IV	ACGT	2 cut(s)	267, 538
HpyCH4V	TGCA	4 cut(s)	4, 110, 265, 319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 313, 428, 458, 509
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	267, 538
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	148, 251, 298
HspAI	GCGC	3 cut(s)	402, 503, 518
LmnI	GCTCC	4 cut(s)	173, 442, 457, 472
LpnPI	CCDG	9 cut(s)	57, 161, 170, 375, 386, 402, 409, 412, 436
Lsp1109I	GCAGC	2 cut(s)	51, 303
LweI	GCATC	2 cut(s)	432, 462
MaeI	CTAG	2 cut(s)	33, 434
MaeII	ACGT	2 cut(s)	267, 538
MbiI	CCGCTC	3 cut(s)	168, 452, 467
MboII	GAAGA	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	409
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	390, 424
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	390, 424
MwoI	GCNNNNNNNGC	5 cut(s)	17, 313, 428, 458, 509
NlaIII	CATG	3 cut(s)	148, 251, 298
NlaIV	GGNNCC	2 cut(s)	38, 380
PceI	AGGCCT	1 cut(s)	422
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	182, 231, 323
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	66, 318
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	2 cut(s)	268, 539
Psp6I	CCWGG	2 cut(s)	388, 422
PspGI	CCWGG	2 cut(s)	388, 422
PspN4I	GGNNCC	2 cut(s)	38, 380
PspPI	GGNCC	2 cut(s)	78, 148
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
Rsr2I	CGGWCCG	1 cut(s)	78
RsrII	CGGWCCG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	65, 317
Sau96I	GGNCC	2 cut(s)	78, 148
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	390, 424
SfaNI	GCATC	2 cut(s)	432, 462
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	209, 242
SmoI	CTYRAG	2 cut(s)	209, 242
Sse9I	AATT	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	6 cut(s)	166, 450, 465, 480, 495, 510
SspMI	CTAG	2 cut(s)	33, 434
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	388, 422
TaaI	ACNGT	2 cut(s)	78, 350
TaiI	ACGT	2 cut(s)	270, 541
TaqI	TCGA	3 cut(s)	229, 287, 334
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	182, 231, 323
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	2 cut(s)	64, 316
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	405
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	336
XspI	CTAG	2 cut(s)	33, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.