Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000057

Orthogroup ID

OG0000120

Physical Location & Seq

Genomic Coordinates Forward (+)

72854 .. 78002

Gene Structure 5149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom57g00030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAGGACGCCACAACAGCTACAATAGTAGCTAAAAACCTCCTCACTCCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGAGTCCCTCGCACTTAGTGTTCAGTGTGCGAGCTCTGTGTCCAACATGGGCCTACGCCTGCTAGCCCGCTCCCGTCAGGTGGAATCGTTGATGGCAGAGGTGGAAAGACTTAAGCAAGAGATCGATCTGCTTAAGTACGAGAATAGAAGTTTGCATGTGCTTGCAAATAACTATTCGTCGGGGATGAAGAGGAAGCTTGATGAGCTGCAAGAATCTGAGGGTCGAATTCACAGTGACCGTCAAAGGCTTGCGTCTTATCTCCAGAGGCACCTTTTTCCTGGGTCATCCAGCGCTTGGCCAAGTATTGAGGCCTGGAATGCTCTAGCTCCGATGCCTCCCGCTCCGATGCCTCCCGCTTCTATGCCTCCCGCTTCTGCGCCTTCCGCTTCTGCGCCTCCAACCTCCACTACTTGCCCTCTTATCTTCCTCGGAATGGGAGCTCACGCAACACTTGTGAGTTCATTCTCACTTATTTTCAACTCTTTTTCTTTTTTTTTTCTTTCTTTTTCACGTTTGTTTTTTTTTTTTTGTTTCAGTGCCCTATTCTTTCTTTGGCACACAAACATACTACTTCATGAATTCCTACGAAAATCCCTTCCCCCACACTTGTTTTTCTGCAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

242

Amino Acids

26.91

Weight (kDa)

8.76

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species	Orthologous Gene IDs
malus_domestica	MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica	Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis	pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccBSI	CCGCTC	2 cut(s)	168, 440
AciI	CCGC	5 cut(s)	166, 438, 453, 468, 483
AcoI	YGGCCR	2 cut(s)	90, 395
AcsI	RAATTY	2 cut(s)	324, 677
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	236
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	178, 393, 532
AflII	CTTAAG	2 cut(s)	209, 230
AgsI	TTSAA	2 cut(s)	98, 577
AjnI	CCWGG	2 cut(s)	376, 410
AluBI	AGCT	7 cut(s)	20, 32, 132, 295, 304, 425, 539
AluI	AGCT	7 cut(s)	20, 32, 132, 295, 304, 425, 539
Alw21I	GWGCWC	2 cut(s)	134, 541
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	4 cut(s)	90, 148, 395, 408
ApeKI	GCWGC	2 cut(s)	64, 304
ApoI	RAATTY	2 cut(s)	324, 677
AspLEI	GCGC	3 cut(s)	392, 478, 493
AspS9I	GGNCC	2 cut(s)	78, 148
AsuNHI	GCTAGC	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	2 cut(s)	134, 541
Bbv12I	GWGCWC	2 cut(s)	134, 541
BbvI	GCAGC	2 cut(s)	51, 291
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	378, 412
BfaI	CTAG	2 cut(s)	161, 422
BfoI	RGCGCY	1 cut(s)	393
BfrI	CTTAAG	2 cut(s)	209, 230
BisI	GCNGC	2 cut(s)	65, 305
BlsI	GCNGC	2 cut(s)	66, 306
Bme1390I	CCNGG	2 cut(s)	378, 412
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	78, 148
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	2 cut(s)	378, 412
BmsI	GCATC	2 cut(s)	420, 435
BmtI	GCTAGC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	377, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 393, 532
BseBI	CCWGG	2 cut(s)	378, 412
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	377, 526
BseGI	GGATG	2 cut(s)	288, 383
BseLI	CCNNNNNNNGG	3 cut(s)	178, 393, 532
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	51, 291
BshFI	GGCC	4 cut(s)	92, 150, 397, 410
BshNI	GGYRCC	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	134, 541
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	178, 393, 532
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	4 cut(s)	92, 150, 397, 410
Bsp1286I	GDGCHC	3 cut(s)	134, 541, 640
Bsp143I	GATC	2 cut(s)	219, 223
BspACI	CCGC	5 cut(s)	166, 438, 453, 468, 483
BspANI	GGCC	4 cut(s)	92, 150, 397, 410
BspCNI	CTCAG	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	368
BspOI	GCTAGC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	366
BspTI	CTTAAG	2 cut(s)	209, 230
BsrBI	CCGCTC	2 cut(s)	168, 440
BssECI	CCNNGG	2 cut(s)	377, 526
BssMI	GATC	2 cut(s)	219, 223
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	378, 412
Bst4CI	ACNGT	3 cut(s)	78, 332, 338
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	2 cut(s)	209, 230
BstC8I	GCNNGC	6 cut(s)	130, 158, 162, 166, 261, 348
BstDEI	CTNAG	2 cut(s)	113, 315
BstF5I	GGATG	2 cut(s)	288, 383
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	3 cut(s)	392, 478, 493
BstKTI	GATC	2 cut(s)	222, 226
BstMBI	GATC	2 cut(s)	219, 223
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 301, 416, 482
BstNI	CCWGG	2 cut(s)	378, 412
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	376, 410
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	51, 291
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	92, 150, 397, 410
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	288, 383
BtsIMutI	CAGTG	3 cut(s)	128, 337, 640
Cac8I	GCNNGC	6 cut(s)	130, 158, 162, 166, 261, 348
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	3 cut(s)	392, 478, 493
Cfr13I	GGNCC	2 cut(s)	78, 148
ClaI	ATCGAT	1 cut(s)	222
CpoI	CGGWCCG	1 cut(s)	78
CseI	GACGC	2 cut(s)	17, 339
Csp6I	GTAC	1 cut(s)	235
CspI	CGGWCCG	1 cut(s)	78
CviAII	CATG	3 cut(s)	145, 254, 674
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	113, 315
DpnI	GATC	2 cut(s)	221, 225
DpnII	GATC	2 cut(s)	219, 223
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	2 cut(s)	90, 395
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	2 cut(s)	132, 539
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	134, 541
Eco47I	GGWCC	1 cut(s)	78
Eco47III	AGCGCT	1 cut(s)	391
Eco53kI	GAGCTC	2 cut(s)	132, 539
EcoICRI	GAGCTC	2 cut(s)	132, 539
EcoRI	GAATTC	2 cut(s)	324, 677
EcoRII	CCWGG	2 cut(s)	376, 410
EcoT38I	GRGCYC	2 cut(s)	134, 541
FaeI	CATG	3 cut(s)	148, 257, 677
FaiI	YATR	5 cut(s)	146, 255, 461, 665, 675
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	144, 253, 673
FauI	CCCGC	4 cut(s)	173, 445, 460, 475
Fnu4HI	GCNGC	2 cut(s)	65, 305
FokI	GGATG	2 cut(s)	295, 370
FriOI	GRGCYC	2 cut(s)	134, 541
Fsp4HI	GCNGC	2 cut(s)	65, 305
FspBI	CTAG	2 cut(s)	161, 422
GlaI	GCGC	3 cut(s)	391, 477, 492
GluI	GCNGC	2 cut(s)	65, 305
GsuI	CTGGAG	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	92, 150, 397, 410
HgaI	GACGC	2 cut(s)	17, 339
HhaI	GCGC	3 cut(s)	392, 478, 493
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	148, 257, 677
Hin6I	GCGC	3 cut(s)	390, 476, 491
HinP1I	GCGC	3 cut(s)	390, 476, 491
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	101, 182, 311
Hpy188I	TCNGA	5 cut(s)	82, 316, 429, 444, 530
Hpy188III	TCNNGA	4 cut(s)	72, 98, 361, 674
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	489, 704
HpyCH4III	ACNGT	3 cut(s)	78, 332, 338
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	4, 253, 263, 307, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 301, 416, 482
HpyF3I	CTNAG	2 cut(s)	113, 315
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	148, 257, 677
HspAI	GCGC	3 cut(s)	390, 476, 491
Kzo9I	GATC	2 cut(s)	219, 223
LmnI	GCTCC	4 cut(s)	173, 430, 445, 536
LpnPI	CCDG	9 cut(s)	57, 161, 170, 363, 374, 390, 397, 400, 424
Lsp1109I	GCAGC	2 cut(s)	51, 291
LweI	GCATC	2 cut(s)	420, 435
MaeI	CTAG	2 cut(s)	161, 422
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	2 cut(s)	221, 225
MbiI	CCGCTC	2 cut(s)	168, 440
MboI	GATC	2 cut(s)	219, 223
MboII	GAAGA	2 cut(s)	298, 514
MhlI	GDGCHC	3 cut(s)	134, 541, 640
MlsI	TGGCCA	1 cut(s)	397
MluCI	AATT	2 cut(s)	324, 677
MluNI	TGGCCA	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	165, 521
Mox20I	TGGCCA	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	397
MseI	TTAA	2 cut(s)	210, 231
Msp20I	TGGCCA	1 cut(s)	397
MspCI	CTTAAG	2 cut(s)	209, 230
MspR9I	CCNGG	2 cut(s)	378, 412
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	378, 412
MwoI	GCNNNNNNNGC	4 cut(s)	17, 301, 416, 482
NdeII	GATC	2 cut(s)	219, 223
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	148, 257, 677
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	410
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	182, 311
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	66, 306
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp124BI	GAGCTC	2 cut(s)	134, 541
Psp6I	CCWGG	2 cut(s)	376, 410
PspGI	CCWGG	2 cut(s)	376, 410
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	78, 148
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
Rsr2I	CGGWCCG	1 cut(s)	78
RsrII	CGGWCCG	1 cut(s)	78
SacI	GAGCTC	2 cut(s)	134, 541
SaqAI	TTAA	2 cut(s)	210, 231
SatI	GCNGC	2 cut(s)	65, 305
Sau3AI	GATC	2 cut(s)	219, 223
Sau96I	GGNCC	2 cut(s)	78, 148
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	378, 412
SduI	GDGCHC	3 cut(s)	134, 541, 640
SfaNI	GCATC	2 cut(s)	420, 435
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	209, 230
SmoI	CTYRAG	2 cut(s)	209, 230
Sse9I	AATT	2 cut(s)	324, 677
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	5 cut(s)	166, 438, 453, 468, 483
SspMI	CTAG	2 cut(s)	161, 422
SstI	GAGCTC	2 cut(s)	134, 541
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	376, 410
TaaI	ACNGT	3 cut(s)	78, 332, 338
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	2 cut(s)	222, 322
TasI	AATT	2 cut(s)	324, 677
TfiI	GAWTC	2 cut(s)	182, 311
Tru1I	TTAA	2 cut(s)	210, 231
Tru9I	TTAA	2 cut(s)	210, 231
TscAI	CASTG	3 cut(s)	128, 337, 640
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	64, 304
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	299, 549, 662, 690
TspRI	CASTG	3 cut(s)	128, 337, 640
Van91I	CCANNNNNTGG	1 cut(s)	393
Vha464I	CTTAAG	2 cut(s)	209, 230
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	2 cut(s)	324, 677
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	2 cut(s)	161, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.