Prupe.7G095400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000120
Physical Location & Seq
Reverse (-)
12781381 .. 12781611
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G095400.1

Sequence Viewer

Length: 231 bp
ATGCGCATACTAGGAACGAGGGATGACAACCGGTTAGTGAGCGACGTCGTGGCACTGAGCGTGCAAAGTGGGGCATCTATCGCAAGTGTGGGGCATCGCCTCATTGGGAAATCTCATGAGGTGCAAGTACTGAGAGCTCAGCTGATGGCAGAACAGAATTTGATTGATGAATATCAGTGTGACATCAAAAGATTGAAAAAGAATAGGGCAAAGACAGCAGAGAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

9.65

Isoelectric Point (pI)

22.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
Acc16I TGCGCA 1 cut(s) 5
AcsI RAATTY 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 129
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 2 cut(s) 137, 142
AluI AGCT 2 cut(s) 137, 142
Alw21I GWGCWC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 30
AspLEI GCGC 1 cut(s) 6
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 139
BccI CCATC 1 cut(s) 139
BfaI CTAG 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 129
BmsI GCATC 2 cut(s) 83, 103
Bpu1102I GCTNAGC 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 171
BseGI GGATG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 171
BseMII CTCAG 3 cut(s) 47, 122, 152
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 138
BspCNI CTCAG 3 cut(s) 48, 123, 151
BspHI TCATGA 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 56, 131, 138
BstF5I GGATG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 80, 215
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 53, 182
Cac8I GCNNGC 1 cut(s) 62
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 30
Csp6I GTAC 1 cut(s) 128
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 1 cut(s) 116
CviJI RGCY 2 cut(s) 137, 142
CviKI_1 RGCY 2 cut(s) 137, 142
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 3 cut(s) 56, 131, 138
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 8, 117
FatI CATG 1 cut(s) 115
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 139
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 11
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
HapII CCGG 1 cut(s) 31
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 2 cut(s) 47, 50
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 64, 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 215
HpyF3I CTNAG 3 cut(s) 56, 131, 138
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 44
LweI GCATC 2 cut(s) 83, 103
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 157
MnlI CCTC 3 cut(s) 12, 110, 112
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 80, 215
NlaIII CATG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 179
NsbI TGCGCA 1 cut(s) 5
PagI TCATGA 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SacI GAGCTC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 129
SduI GDGCHC 1 cut(s) 139
SetI ASST 4 cut(s) 48, 123, 139, 144
SfaNI GCATC 2 cut(s) 83, 103
SgeI CNNG 8 cut(s) 23, 30, 43, 61, 73, 96, 128, 137
Sse9I AATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 139
TaiI ACGT 1 cut(s) 48
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 127
TscAI CASTG 2 cut(s) 60, 182
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 2 cut(s) 60, 182
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 11
ZraI GACGTC 1 cut(s) 46
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.