pycom01g01770

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000120
Physical Location & Seq
Forward (+)
1613151 .. 1614668
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01770.1

Sequence Viewer

Length: 1251 bp
ATGCAAATACATTCCAATGATCAATGTCCTCAATTAATAGAAAATGGAGGATGGGAAAGTGCCAATGCAGTGGGGTACCAAGGCCAAAATCAGCCAAAATATGATCCATATGCCAACATTTACAATCCGGGCAAGAGAGATCACCCAAACATGAAGTGGAAGGAGCCTCAACAAACTCAAAAACAGGGAGGATTTCGACAGCCACCCCTCGGGATTTTTCAAAGGCCATTTGCACCAATGCAACCTCAACCACATTCGGTCCAACCAAATTTAGGTATGTCTTTGGATAATGATAAAGTTATTCAATTAGTCACCTCTTTGACGCAAGGAGTGCAAAATCAAGCTAAAGAGGTGGACGAATTGAAGAATTCAACCATTATCAATCCAAAGGGAGATTTTGAAATCGCTGAAGCTATTACCTTAAGAAGTAGTATAGAGGCTGGAGCTGACCTAGAAACATCTAAACACAGCCAGAACCCTTCTAAGGCTCATACGCCATCCAATTCAGGTAAAGTTGTTCCAAATTCAATTCTTTCTAACCCCATTCCACCAAATGTGCCTATTCTTTGTAGGTTCATGATTTCCAAGGAAGAAGAAAGTGAAAAAGACATCTTGGAAGCCCTTCCAAAGGTGCAAAGTAATATCCCGATTCTTGGTACAACAAATCAAGTTCCAGAATGTGTTAAATTATTCAAAGAACTTTGTACAACAAGAAGAATGATACAAGAGAAAGAAGTGGCTGGGGAATATCAAGAATTCATCAAAGAGGATGTACTTGAGACAACTAACCCCAAAGAAGTTGGATTTTATGACACAGGACAAGTCACAACCCTGACACCAAATCTGGCCGAGTGCAAAGTTCCTGGAACTTTCAAAGAAGTGGTGTTTGTGCTTGAGTTCTTGTCAGAGCACACAGGTAAGCCACCTCCTCGGATTTCAATTTCGTTTTCTACTAACAATGCCGGATCATTTCAAGTATCACCTTCCATTCAAAGATCAATTCCATTCAAAGATCAATTCCATGTCACGTTAAAGCAAGCGCTTCTTGGGAGGCAACCCATGCGTTCAAATAAAGAAGACCTAGGAATCTCCAACTCCAAAACCAGATTTGCGTTCCTTAACCCTACTCTTTATTGCTTTTACTTTGCCATAATTGTCATGACAATGTTTGGTTTAAGTGTTGGGGGGGGGGGGGGGGTAAATAGATGCTTTCATGACTTATTTTCGAATCTTATCACCTATCACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

417

Amino Acids

46.4

Weight (kDa)

6.52

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 75
AclWI GGATC 2 cut(s) 98, 973
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 4 cut(s) 268, 367, 523, 755
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 4 cut(s) 77, 658, 706, 774
AfeI AGCGCT 1 cut(s) 1041
AfiI CCNNNNNNNGG 5 cut(s) 209, 272, 484, 628, 653
AflII CTTAAG 1 cut(s) 421
AjnI CCWGG 1 cut(s) 862
AluBI AGCT 3 cut(s) 344, 413, 446
AluI AGCT 3 cut(s) 344, 413, 446
Alw21I GWGCWC 1 cut(s) 912
Alw26I GTCTC 1 cut(s) 773
AlwI GGATC 2 cut(s) 98, 973
Ama87I CYCGRG 1 cut(s) 209
Aor51HI AGCGCT 1 cut(s) 1041
AoxI GGCC 3 cut(s) 82, 224, 846
ApoI RAATTY 4 cut(s) 268, 367, 523, 755
AseI ATTAAT 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 75
AspA2I CCTAGG 1 cut(s) 1081
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 4 cut(s) 134, 304, 972, 1228
AsuII TTCGAA 1 cut(s) 1226
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 1081
BanI GGYRCC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 1083
Bbv12I GWGCWC 1 cut(s) 912
BccI CCATC 2 cut(s) 45, 505
BciT130I CCWGG 1 cut(s) 864
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 2 cut(s) 452, 1082
BfoI RGCGCY 1 cut(s) 1043
BfrI CTTAAG 1 cut(s) 421
BlnI CCTAGG 1 cut(s) 1081
Bme1390I CCNGG 2 cut(s) 129, 864
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 77, 165
BmrFI CCNGG 2 cut(s) 129, 864
BmsI GCATC 1 cut(s) 1196
BpiI GAAGAC 1 cut(s) 1083
BpmI CTGGAG 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 1226
BpuEI CTTGAG 2 cut(s) 797, 914
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 5 cut(s) 79, 208, 585, 929, 1081
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 272, 484, 628, 653
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 5 cut(s) 79, 208, 585, 929, 1081
BseGI GGATG 3 cut(s) 56, 497, 775
BseLI CCNNNNNNNGG 5 cut(s) 209, 272, 484, 628, 653
BseRI GAGGAG 1 cut(s) 918
BseYI CCCAGC 1 cut(s) 740
BshFI GGCC 3 cut(s) 84, 226, 848
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 128, 963
BslI CCNNNNNNNGG 5 cut(s) 209, 272, 484, 628, 653
BsmAI GTCTC 1 cut(s) 773
BsnI GGCC 3 cut(s) 84, 226, 848
BsoBI CYCGRG 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 1226
Bsp1286I GDGCHC 1 cut(s) 912
Bsp1407I TGTACA 1 cut(s) 704
Bsp143I GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
BspANI GGCC 3 cut(s) 84, 226, 848
BspHI TCATGA 3 cut(s) 576, 1158, 1213
BspLI GGNNCC 2 cut(s) 77, 165
BspPI GGATC 2 cut(s) 98, 973
BspT104I TTCGAA 1 cut(s) 1226
BspT107I GGYRCC 1 cut(s) 75
BspTI CTTAAG 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 704
BssECI CCNNGG 5 cut(s) 79, 208, 585, 929, 1081
BssMI GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
BssT1I CCWWGG 3 cut(s) 79, 585, 1081
Bst2UI CCWGG 1 cut(s) 864
BstAFI CTTAAG 1 cut(s) 421
BstAPI GCANNNNNTGC 2 cut(s) 331, 1060
BstAUI TGTACA 1 cut(s) 704
BstBI TTCGAA 1 cut(s) 1226
BstC8I GCNNGC 1 cut(s) 1038
BstDEI CTNAG 1 cut(s) 483
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 3 cut(s) 56, 497, 775
BstH2I RGCGCY 1 cut(s) 1043
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 6 cut(s) 22, 106, 142, 968, 998, 1015
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 331, 1060
BstNI CCWGG 1 cut(s) 864
BstSCI CCNGG 2 cut(s) 127, 862
BstV2I GAAGAC 1 cut(s) 1083
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 84, 226, 848
BtsCI GGATG 3 cut(s) 56, 497, 775
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 1038
CciI TCATGA 3 cut(s) 576, 1158, 1213
CfoI GCGC 1 cut(s) 1042
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 1 cut(s) 331
Csp6I GTAC 4 cut(s) 76, 657, 705, 773
CviAII CATG 6 cut(s) 151, 577, 1022, 1060, 1159, 1214
CviQI GTAC 4 cut(s) 76, 657, 705, 773
DdeI CTNAG 1 cut(s) 483
DpnI GATC 6 cut(s) 21, 105, 141, 967, 997, 1014
DpnII GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
EaeI YGGCCR 1 cut(s) 846
Eco130I CCWWGG 3 cut(s) 79, 585, 1081
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 1041
Eco57I CTGAAG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoRI GAATTC 2 cut(s) 367, 755
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 3 cut(s) 79, 585, 1081
ErhI CCWWGG 3 cut(s) 79, 585, 1081
FaeI CATG 6 cut(s) 154, 580, 1025, 1063, 1162, 1217
FalI AAGNNNNNCTT 2 cut(s) 1029, 1061
FatI CATG 6 cut(s) 150, 576, 1021, 1059, 1158, 1213
FauNDI CATATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 19
FokI GGATG 3 cut(s) 63, 484, 782
FspBI CTAG 2 cut(s) 452, 1082
GlaI GCGC 1 cut(s) 1041
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 1043
HaeIII GGCC 3 cut(s) 84, 226, 848
HapII CCGG 2 cut(s) 128, 963
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 1042
Hin1II CATG 6 cut(s) 154, 580, 1025, 1063, 1162, 1217
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HinfI GANTC 3 cut(s) 649, 1086, 1228
HpaII CCGG 2 cut(s) 128, 963
HphI GGTGA 4 cut(s) 134, 304, 972, 1228
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 907, 933
Hpy188III TCNNGA 7 cut(s) 211, 577, 646, 674, 752, 1159, 1214
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 4 cut(s) 154, 489, 632, 993
HpyCH4IV ACGT 1 cut(s) 1028
HpyCH4V TGCA 7 cut(s) 4, 68, 233, 241, 334, 634, 855
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 1060
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 1 cut(s) 1028
Hsp92II CATG 6 cut(s) 154, 580, 1025, 1063, 1162, 1217
HspAI GCGC 1 cut(s) 1040
KpnI GGTACC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
LmnI GCTCC 2 cut(s) 163, 443
LweI GCATC 1 cut(s) 1196
MaeI CTAG 2 cut(s) 452, 1082
MaeII ACGT 1 cut(s) 1028
MaeIII GTNAC 3 cut(s) 310, 823, 1024
MalI GATC 6 cut(s) 21, 105, 141, 967, 997, 1014
MboI GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
MboII GAAGA 5 cut(s) 376, 602, 605, 726, 1088
MhlI GDGCHC 1 cut(s) 912
MmeI TCCRAC 3 cut(s) 286, 781, 1116
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 6 cut(s) 35, 422, 684, 1031, 1119, 1175
MslI CAYNNNNRTG 2 cut(s) 15, 1163
MspCI CTTAAG 1 cut(s) 421
MspI CCGG 2 cut(s) 128, 963
MspR9I CCNGG 2 cut(s) 129, 864
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 331, 1060
NciI CCSGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 109
NdeII GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
NlaIII CATG 6 cut(s) 154, 580, 1025, 1063, 1162, 1217
NlaIV GGNNCC 2 cut(s) 77, 165
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 310, 823, 1024
NspV TTCGAA 1 cut(s) 1226
PagI TCATGA 3 cut(s) 576, 1158, 1213
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 3 cut(s) 649, 1086, 1228
PfoI TCCNGGA 1 cut(s) 862
PshBI ATTAAT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 2 cut(s) 77, 165
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 4 cut(s) 77, 658, 706, 774
RsaNI GTAC 4 cut(s) 76, 657, 705, 773
RseI CAYNNNNRTG 2 cut(s) 15, 1163
SaqAI TTAA 6 cut(s) 35, 422, 684, 1031, 1119, 1175
Sau3AI GATC 6 cut(s) 19, 103, 139, 965, 995, 1012
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 129, 864
SduI GDGCHC 1 cut(s) 912
SfaNI GCATC 1 cut(s) 1196
SfuI TTCGAA 1 cut(s) 1226
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 15, 1163
SmlI CTYRAG 3 cut(s) 421, 776, 893
SmoI CTYRAG 3 cut(s) 421, 776, 893
SspMI CTAG 2 cut(s) 452, 1082
StyD4I CCNGG 2 cut(s) 127, 862
StyI CCWWGG 3 cut(s) 79, 585, 1081
TaiI ACGT 1 cut(s) 1031
TaqI TCGA 2 cut(s) 196, 1226
TaqII GACCGA 1 cut(s) 247
TatI WGTACW 2 cut(s) 704, 772
TfiI GAWTC 3 cut(s) 649, 1086, 1228
Tru1I TTAA 6 cut(s) 35, 422, 684, 1031, 1119, 1175
Tru9I TTAA 6 cut(s) 35, 422, 684, 1031, 1119, 1175
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 3 cut(s) 310, 823, 1024
Tsp45I GTSAC 3 cut(s) 310, 823, 1024
TspDTI ATGAA 4 cut(s) 167, 565, 748, 1202
TspRI CASTG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 4 cut(s) 268, 367, 523, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XmaJI CCTAGG 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 452, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.