pycom01g00820

Nudix hydrolase 3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
767879 .. 768772
894 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00820.2

Sequence Viewer

Length: 798 bp
ATGGCAAACCCATCGAACCTTAGCTTGGAATTGAGCCTTAGCAGTGATACGGGCGCGCCGCGTCAAGGTAACGTATGGCGCCCTTCTTTCTTATCTTCTAACGGTCCTCTCACAGGTGAAAACTCCGTGATGCAGGACGCCACAACAGCTACAATAGTAGCTAGGAACCTCCTTACTCCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGAGTCCCTCGCACTTAGTGTTCAGTGTGCGAGTTCTGTGTCCAACATGGGCCAACGCCTGCTTGCCCGCTCCCGTCAGGTGGAATCATTGATGGCAGAGGTGGAAAGTCTTAAGCAGGAGATCAAACTGCTTAAGCATGAGAATAGAAGTTTGCACGTGCTTGCCAACAACTATTCGACGGGCATGAAGAGGAAGCTTGATGAACTGCAAGAGTCTGAAGGTCGGATTCAAAGTGACCGTCAAAGGTTTTCGTCTTTCCTCCAGAGGCACCTTTTTCCTGGATCATCCAGCGTTTGGCCAAGTATTGAGGCCTCGAATGCTCTATCTTCGATGCCTCCAGCTCCGATGCCTTCCGCTCCTATGTCTTCTGCCCCGATGCCTTCCGTCTCGATGCTTTCCGCTTCAAGAGTTTTGCCACGTAGTGGGTCTTTAAGTAAACAACCTTTTGGGTTAACCCAATCACTCCAGGATATGTTCACGAATCGGATGAGAACTCCGAGTCATAAACTAGTACCTAGAACAAGAAACAAAACAACATTAAGAATCTGGAATAAAAACAAACGAAAATAA

Protein Analysis

266

Amino Acids

29.22

Weight (kDa)

10.72

Isoelectric Point (pI)

66.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 495
AccB7I CCANNNNNTGG 2 cut(s) 522, 650
AccBSI CCGCTC 2 cut(s) 297, 584
AccII CGCG 2 cut(s) 56, 61
AciI CCGC 4 cut(s) 59, 295, 582, 627
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 2 cut(s) 219, 524
AcuI CTGAAG 1 cut(s) 465
AcvI CACGTG 1 cut(s) 385
AcyI GRCGYC 2 cut(s) 79, 138
AdeI CACNNNGTG 2 cut(s) 245, 650
AfaI GTAC 1 cut(s) 741
AfiI CCNNNNNNNGG 6 cut(s) 25, 65, 113, 307, 522, 650
AflII CTTAAG 2 cut(s) 338, 359
AgsI TTSAA 3 cut(s) 227, 458, 633
AhlI ACTAGT 1 cut(s) 736
AjnI CCWGG 2 cut(s) 505, 693
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 5 cut(s) 24, 149, 161, 424, 569
AluI AGCT 5 cut(s) 24, 149, 161, 424, 569
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 1 cut(s) 517
AoxI GGCC 4 cut(s) 219, 277, 524, 537
ApeKI GCWGC 1 cut(s) 193
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AscI GGCGCGCC 1 cut(s) 54
AspLEI GCGC 3 cut(s) 56, 58, 81
AspS9I GGNCC 3 cut(s) 104, 207, 277
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 2 cut(s) 104, 207
BalI TGGCCA 1 cut(s) 526
BanI GGYRCC 2 cut(s) 78, 495
BbrPI CACGTG 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 19, 313
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 507, 695
BcoDI GTCTC 1 cut(s) 619
BcuI ACTAGT 1 cut(s) 736
BfaI CTAG 3 cut(s) 162, 737, 744
BfoI RGCGCY 1 cut(s) 82
BfrI CTTAAG 2 cut(s) 338, 359
BisI GCNGC 2 cut(s) 59, 194
BlsI GCNGC 2 cut(s) 60, 195
Bme1390I CCNGG 2 cut(s) 507, 695
Bme18I GGWCC 2 cut(s) 104, 207
BmgT120I GGNCC 3 cut(s) 104, 207, 277
BmiI GGNNCC 3 cut(s) 80, 167, 497
BmrFI CCNGG 2 cut(s) 507, 695
BmsI GCATC 5 cut(s) 120, 549, 564, 594, 609
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 3 cut(s) 473, 549, 677
Bpu10I CCTNAGC 2 cut(s) 20, 38
BsaAI YACGTR 2 cut(s) 385, 647
BsaHI GRCGYC 2 cut(s) 79, 138
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 65, 113, 307, 522, 650
BseBI CCWGG 2 cut(s) 507, 695
BseGI GGATG 2 cut(s) 512, 720
BseLI CCNNNNNNNGG 6 cut(s) 25, 65, 113, 307, 522, 650
BsePI GCGCGC 1 cut(s) 54
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 56, 61
BshFI GGCC 4 cut(s) 221, 279, 526, 539
BshNI GGYRCC 2 cut(s) 78, 495
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 6 cut(s) 25, 65, 113, 307, 522, 650
BsmAI GTCTC 1 cut(s) 619
BsmBI CGTCTC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 4 cut(s) 221, 279, 526, 539
Bsp143I GATC 2 cut(s) 348, 509
BspACI CCGC 4 cut(s) 59, 295, 582, 627
BspANI GGCC 4 cut(s) 221, 279, 526, 539
BspFNI CGCG 2 cut(s) 56, 61
BspLI GGNNCC 3 cut(s) 80, 167, 497
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 2 cut(s) 78, 495
BspTI CTTAAG 2 cut(s) 338, 359
BsrBI CCGCTC 2 cut(s) 297, 584
BssHII GCGCGC 1 cut(s) 54
BssMI GATC 2 cut(s) 348, 509
BssNI GRCGYC 2 cut(s) 79, 138
Bst2UI CCWGG 2 cut(s) 507, 695
Bst4CI ACNGT 3 cut(s) 104, 207, 467
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 2 cut(s) 79, 138
BstAFI CTTAAG 2 cut(s) 338, 359
BstBAI YACGTR 2 cut(s) 385, 647
BstC8I GCNNGC 5 cut(s) 56, 287, 291, 295, 390
BstDEI CTNAG 3 cut(s) 20, 38, 242
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 512, 720
BstFNI CGCG 2 cut(s) 56, 61
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 56, 58, 81
BstKTI GATC 2 cut(s) 351, 512
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 2 cut(s) 348, 509
BstMWI GCNNNNNNNGC 2 cut(s) 146, 545
BstNI CCWGG 2 cut(s) 507, 695
BstSCI CCNGG 2 cut(s) 505, 693
BstUI CGCG 2 cut(s) 56, 61
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 585
BsuRI GGCC 4 cut(s) 221, 279, 526, 539
BtsCI GGATG 2 cut(s) 512, 720
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 257
Cac8I GCNNGC 5 cut(s) 56, 287, 291, 295, 390
CfoI GCGC 3 cut(s) 56, 58, 81
Cfr13I GGNCC 3 cut(s) 104, 207, 277
CpoI CGGWCCG 1 cut(s) 207
CseI GACGC 2 cut(s) 50, 146
Csp6I GTAC 1 cut(s) 740
CspI CGGWCCG 1 cut(s) 207
CviAII CATG 3 cut(s) 274, 365, 412
CviQI GTAC 1 cut(s) 740
DdeI CTNAG 3 cut(s) 20, 38, 242
DinI GGCGCC 1 cut(s) 80
DpnI GATC 2 cut(s) 350, 511
DpnII GATC 2 cut(s) 348, 509
DraIII CACNNNGTG 2 cut(s) 245, 650
EaeI YGGCCR 2 cut(s) 219, 524
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco147I AGGCCT 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 104, 207
Eco57I CTGAAG 1 cut(s) 465
Eco72I CACGTG 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 505, 693
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 619
FaeI CATG 3 cut(s) 277, 368, 415
FaiI YATR 7 cut(s) 76, 275, 366, 413, 590, 701, 732
FaqI GGGAC 1 cut(s) 217
FatI CATG 3 cut(s) 273, 364, 411
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 59, 194
FokI GGATG 2 cut(s) 499, 727
Fsp4HI GCNGC 2 cut(s) 59, 194
FspBI CTAG 3 cut(s) 162, 737, 744
GlaI GCGC 3 cut(s) 55, 57, 80
GluI GCNGC 2 cut(s) 59, 194
GsuI CTGGAG 3 cut(s) 473, 549, 677
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 4 cut(s) 221, 279, 526, 539
HgaI GACGC 2 cut(s) 50, 146
HhaI GCGC 3 cut(s) 56, 58, 81
Hin1I GRCGYC 2 cut(s) 79, 138
Hin1II CATG 3 cut(s) 277, 368, 415
Hin6I GCGC 3 cut(s) 54, 56, 79
HinP1I GCGC 3 cut(s) 54, 56, 79
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 7 cut(s) 230, 311, 440, 454, 709, 727, 771
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 665, 681, 705
Hpy188I TCNGA 6 cut(s) 211, 445, 453, 573, 714, 726
Hpy188III TCNNGA 7 cut(s) 201, 227, 490, 616, 633, 706, 775
Hpy8I GTNNAC 3 cut(s) 665, 681, 705
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 93, 440, 588, 618
HpyCH4III ACNGT 3 cut(s) 104, 207, 467
HpyCH4IV ACGT 3 cut(s) 72, 384, 646
HpyCH4V TGCA 3 cut(s) 133, 382, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 545
HpyF3I CTNAG 3 cut(s) 20, 38, 242
HpySE526I ACGT 3 cut(s) 72, 384, 646
Hsp92I GRCGYC 2 cut(s) 79, 138
Hsp92II CATG 3 cut(s) 277, 368, 415
HspAI GCGC 3 cut(s) 54, 56, 79
KasI GGCGCC 1 cut(s) 78
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 348, 509
LmnI GCTCC 3 cut(s) 302, 574, 589
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 5 cut(s) 120, 549, 564, 594, 609
MaeI CTAG 3 cut(s) 162, 737, 744
MaeII ACGT 3 cut(s) 72, 384, 646
MaeIII GTNAC 2 cut(s) 68, 461
MalI GATC 2 cut(s) 350, 511
MbiI CCGCTC 2 cut(s) 297, 584
MboI GATC 2 cut(s) 348, 509
MboII GAAGA 4 cut(s) 87, 427, 546, 585
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 526
Mly113I GGCGCC 1 cut(s) 79
MlyI GAGTC 3 cut(s) 239, 449, 736
MmeI TCCRAC 2 cut(s) 294, 431
Mox20I TGGCCA 1 cut(s) 526
MscI TGGCCA 1 cut(s) 526
MseI TTAA 5 cut(s) 339, 360, 659, 680, 767
Msp20I TGGCCA 1 cut(s) 526
MspCI CTTAAG 2 cut(s) 338, 359
MspR9I CCNGG 2 cut(s) 507, 695
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 2 cut(s) 507, 695
MvnI CGCG 2 cut(s) 56, 61
MwoI GCNNNNNNNGC 2 cut(s) 146, 545
NarI GGCGCC 1 cut(s) 79
NdeII GATC 2 cut(s) 348, 509
NlaIII CATG 3 cut(s) 277, 368, 415
NlaIV GGNNCC 3 cut(s) 80, 167, 497
NmuCI GTSAC 1 cut(s) 461
PalAI GGCGCGCC 1 cut(s) 54
PauI GCGCGC 1 cut(s) 54
PceI AGGCCT 1 cut(s) 539
PctI GAATGC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 311, 454, 709, 771
PflMI CCANNNNNTGG 2 cut(s) 522, 650
PfoI TCCNGGA 2 cut(s) 505, 693
PkrI GCNGC 2 cut(s) 60, 195
PleI GAGTC 3 cut(s) 238, 448, 735
PluTI GGCGCC 1 cut(s) 82
PmaCI CACGTG 1 cut(s) 385
PmlI CACGTG 1 cut(s) 385
PpsI GAGTC 3 cut(s) 238, 448, 735
Ppu21I YACGTR 2 cut(s) 385, 647
Psp6I CCWGG 2 cut(s) 505, 693
PspCI CACGTG 1 cut(s) 385
PspGI CCWGG 2 cut(s) 505, 693
PspN4I GGNNCC 3 cut(s) 80, 167, 497
PspPI GGNCC 3 cut(s) 104, 207, 277
PteI GCGCGC 1 cut(s) 54
RsaI GTAC 1 cut(s) 741
RsaNI GTAC 1 cut(s) 740
Rsr2I CGGWCCG 1 cut(s) 207
RsrII CGGWCCG 1 cut(s) 207
SaqAI TTAA 5 cut(s) 339, 360, 659, 680, 767
SatI GCNGC 2 cut(s) 59, 194
Sau3AI GATC 2 cut(s) 348, 509
Sau96I GGNCC 3 cut(s) 104, 207, 277
SchI GAGTC 3 cut(s) 239, 449, 736
ScrFI CCNGG 2 cut(s) 507, 695
SfaNI GCATC 5 cut(s) 120, 549, 564, 594, 609
SfoI GGCGCC 1 cut(s) 80
SgsI GGCGCGCC 1 cut(s) 54
SinI GGWCC 2 cut(s) 104, 207
SmlI CTYRAG 2 cut(s) 338, 359
SmoI CTYRAG 2 cut(s) 338, 359
SpeI ACTAGT 1 cut(s) 736
Sse9I AATT 1 cut(s) 29
SseBI AGGCCT 1 cut(s) 539
SsiI CCGC 4 cut(s) 59, 295, 582, 627
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 3 cut(s) 162, 737, 744
StuI AGGCCT 1 cut(s) 539
StyD4I CCNGG 2 cut(s) 505, 693
TaaI ACNGT 3 cut(s) 104, 207, 467
TaiI ACGT 3 cut(s) 75, 387, 649
TaqI TCGA 5 cut(s) 14, 404, 542, 557, 617
TasI AATT 1 cut(s) 29
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 4 cut(s) 311, 454, 709, 771
Tru1I TTAA 5 cut(s) 339, 360, 659, 680, 767
Tru9I TTAA 5 cut(s) 339, 360, 659, 680, 767
TscAI CASTG 2 cut(s) 49, 257
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 428, 444
TspGWI ACGGA 2 cut(s) 115, 601
TspRI CASTG 2 cut(s) 49, 257
Van91I CCANNNNNTGG 2 cut(s) 522, 650
Vha464I CTTAAG 2 cut(s) 338, 359
VpaK11BI GGWCC 2 cut(s) 104, 207
XagI CCTNNNNNAGG 1 cut(s) 111
XspI CTAG 3 cut(s) 162, 737, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.