pycom2177g00180

Nudix hydrolase 3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002177
Physical Location & Seq
Forward (+)
232722 .. 250917
18196 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2177g00180.2

Sequence Viewer

Length: 762 bp
ATGCTCTTCACTTGCATTTGGTTTCTTTCTTCTTTGTTTTTGGCATCCAGGCCCTATACTTTTGCTTTTGACCTTGATGATATGAGATACCTTTGCTTTGAAGAAGCGGTGAATGAATCAGCACATGCTTCAATCCGCCGTTTCCTCCTGGGTCATCTGTACTCCCGGCATCTGGTATCATCTTTGGGGAAGAAGAAAGAATTGAGTATTTCGAAAGGCTTTGCTGGGAGTGCGCCCTCAGAGGTGAGGGAGAGTTGGGCATTTTCTTCAGGTTTTCCTTGCCATAAAAGACGAAGGTCGACATATATAGAGATAATATCAAGTGGTGGTACTCTTTTTTTACCCTTGTCGACAAACGACGCCACAACAGCTACAATAGTAGCTAGGAACCTCCTCACTCCAAAAGATAGTAGGCTGCTGTCAGGACGGTCCGATGAGTTGGCCGTTCAAGAGTCCCTCGCACTTAGTGTTCAGTGTGCGAGTTCTAGGCACCTTTTTCCTGGCTCATCCAGCGCTTGGCCAAGTATTGAGGCCTGGAATGCTCTAGCTCCGATGCCTCCCGCTCCGATGCCTTCCGCTCCGATAGTGTGGCTTCCGCTCCGATGCCTTCCGCTTCTATGCCTCCCGCTTCTATGCCTTCCGCTTCTGCGCCTCGTAGTGGGGCTTCACGCAAACAACCTTTGTGAAGCTCCACCTTTCTCCATGTTTAGTATCGTTCTTTTTTTTTTTATTTTTTATTTTTTTATTTTTTTATTTTATTAA

Protein Analysis

254

Amino Acids

28.27

Weight (kDa)

8.66

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 516
AccBSI CCGCTC 3 cut(s) 563, 578, 598
AccI GTMKAC 2 cut(s) 299, 350
AciI CCGC 8 cut(s) 107, 136, 561, 576, 596, 611, 626, 641
AcoI YGGCCR 2 cut(s) 441, 518
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 2 cut(s) 161, 331
AfeI AGCGCT 1 cut(s) 514
AfiI CCNNNNNNNGG 3 cut(s) 172, 516, 658
AgsI TTSAA 3 cut(s) 101, 132, 449
AjnI CCWGG 4 cut(s) 47, 147, 499, 533
AluBI AGCT 4 cut(s) 371, 383, 548, 689
AluI AGCT 4 cut(s) 371, 383, 548, 689
Aor51HI AGCGCT 1 cut(s) 514
AoxI GGCC 4 cut(s) 50, 441, 518, 531
ApeKI GCWGC 1 cut(s) 415
AspLEI GCGC 3 cut(s) 235, 515, 651
AspS9I GGNCC 2 cut(s) 51, 429
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 121, 256
AsuII TTCGAA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 520
BanI GGYRCC 1 cut(s) 489
BarI GAAGNNNNNNTAC 2 cut(s) 648, 680
BbvI GCAGC 1 cut(s) 402
BceAI ACGGC 2 cut(s) 123, 428
BciT130I CCWGG 4 cut(s) 49, 149, 501, 535
BcnI CCSGG 1 cut(s) 166
BfaI CTAG 3 cut(s) 384, 486, 545
BfoI RGCGCY 1 cut(s) 516
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 5 cut(s) 49, 149, 166, 501, 535
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 2 cut(s) 51, 429
BmiI GGNNCC 2 cut(s) 389, 491
BmrFI CCNGG 5 cut(s) 49, 149, 166, 501, 535
BmsI GCATC 5 cut(s) 53, 178, 543, 558, 593
BoxI GACNNNNGTC 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 516, 658
BseBI CCWGG 4 cut(s) 49, 149, 501, 535
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 44, 506
BseLI CCNNNNNNNGG 3 cut(s) 172, 516, 658
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 224
BshFI GGCC 4 cut(s) 52, 443, 520, 533
BshNI GGYRCC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 172, 516, 658
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 4 cut(s) 52, 443, 520, 533
Bsp119I TTCGAA 1 cut(s) 212
BspACI CCGC 8 cut(s) 107, 136, 561, 576, 596, 611, 626, 641
BspANI GGCC 4 cut(s) 52, 443, 520, 533
BspCNI CTCAG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 389, 491
BspQI GCTCTTC 1 cut(s) 11
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 489
BsrBI CCGCTC 3 cut(s) 563, 578, 598
BssECI CCNNGG 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 4 cut(s) 49, 149, 501, 535
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 238, 464
BstF5I GGATG 2 cut(s) 44, 506
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 3 cut(s) 235, 515, 651
BstMWI GCNNNNNNNGC 4 cut(s) 230, 368, 510, 539
BstNI CCWGG 4 cut(s) 49, 149, 501, 535
BstNSI RCATGY 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 295
BstSCI CCNGG 5 cut(s) 47, 147, 164, 499, 533
BstV1I GCAGC 1 cut(s) 402
BsuRI GGCC 4 cut(s) 52, 443, 520, 533
BtsCI GGATG 2 cut(s) 44, 506
BtsIMutI CAGTG 1 cut(s) 479
CfoI GCGC 3 cut(s) 235, 515, 651
Cfr13I GGNCC 2 cut(s) 51, 429
CpoI CGGWCCG 1 cut(s) 429
CseI GACGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 160, 330
CspI CGGWCCG 1 cut(s) 429
CviAII CATG 2 cut(s) 125, 703
CviQI GTAC 2 cut(s) 160, 330
DdeI CTNAG 2 cut(s) 238, 464
DraIII CACNNNGTG 1 cut(s) 467
EaeI YGGCCR 2 cut(s) 441, 518
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 1 cut(s) 125
Eco147I AGGCCT 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 429
Eco47III AGCGCT 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 4 cut(s) 47, 147, 499, 533
FaeI CATG 2 cut(s) 128, 706
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 124, 702
FauI CCCGC 2 cut(s) 568, 633
FblI GTMKAC 2 cut(s) 299, 350
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 31, 493
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 3 cut(s) 384, 486, 545
GlaI GCGC 3 cut(s) 234, 514, 650
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 4 cut(s) 52, 443, 520, 533
HapII CCGG 1 cut(s) 166
HgaI GACGC 1 cut(s) 368
HhaI GCGC 3 cut(s) 235, 515, 651
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 2 cut(s) 128, 706
Hin6I GCGC 3 cut(s) 233, 513, 649
HinP1I GCGC 3 cut(s) 233, 513, 649
HincII GTYRAC 2 cut(s) 300, 351
HindII GTYRAC 2 cut(s) 300, 351
HinfI GANTC 2 cut(s) 116, 452
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 121, 256
Hpy166II GTNNAC 2 cut(s) 300, 351
Hpy188I TCNGA 6 cut(s) 241, 433, 552, 567, 582, 602
Hpy188III TCNNGA 2 cut(s) 423, 449
Hpy8I GTNNAC 2 cut(s) 300, 351
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 4 cut(s) 288, 582, 617, 647
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 368, 510, 539
HpyF3I CTNAG 2 cut(s) 238, 464
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 2 cut(s) 128, 706
HspAI GCGC 3 cut(s) 233, 513, 649
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 5 cut(s) 553, 568, 583, 603, 694
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 5 cut(s) 53, 178, 543, 558, 593
MaeI CTAG 3 cut(s) 384, 486, 545
MbiI CCGCTC 3 cut(s) 563, 578, 598
MboII GAAGA 5 cut(s) 21, 113, 202, 205, 258
MlsI TGGCCA 1 cut(s) 520
MluCI AATT 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 520
MlyI GAGTC 1 cut(s) 461
Mox20I TGGCCA 1 cut(s) 520
MscI TGGCCA 1 cut(s) 520
MseI TTAA 1 cut(s) 760
Msp20I TGGCCA 1 cut(s) 520
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 5 cut(s) 49, 149, 166, 501, 535
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 4 cut(s) 49, 149, 501, 535
MwoI GCNNNNNNNGC 4 cut(s) 230, 368, 510, 539
NciI CCSGG 1 cut(s) 166
NlaIII CATG 2 cut(s) 128, 706
NlaIV GGNNCC 2 cut(s) 389, 491
NspI RCATGY 1 cut(s) 128
NspV TTCGAA 1 cut(s) 212
PceI AGGCCT 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 11
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 516
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PshAI GACNNNNGTC 1 cut(s) 295
Psp6I CCWGG 4 cut(s) 47, 147, 499, 533
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 4 cut(s) 47, 147, 499, 533
PspN4I GGNNCC 2 cut(s) 389, 491
PspPI GGNCC 2 cut(s) 51, 429
RsaI GTAC 2 cut(s) 161, 331
RsaNI GTAC 2 cut(s) 160, 330
Rsr2I CGGWCCG 1 cut(s) 429
RsrII CGGWCCG 1 cut(s) 429
SalI GTCGAC 2 cut(s) 298, 349
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 760
SatI GCNGC 1 cut(s) 416
Sau96I GGNCC 2 cut(s) 51, 429
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 5 cut(s) 49, 149, 166, 501, 535
SfaNI GCATC 5 cut(s) 53, 178, 543, 558, 593
SfuI TTCGAA 1 cut(s) 212
SinI GGWCC 1 cut(s) 429
Sse9I AATT 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 8 cut(s) 107, 136, 561, 576, 596, 611, 626, 641
SspMI CTAG 3 cut(s) 384, 486, 545
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 5 cut(s) 47, 147, 164, 499, 533
TaaI ACNGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 212, 299, 350
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 760
Tru9I TTAA 1 cut(s) 760
TscAI CASTG 1 cut(s) 479
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 429
XceI RCATGY 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 299, 350
XspI CTAG 3 cut(s) 384, 486, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.