pycom01g03120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000120
Physical Location & Seq
Forward (+)
2487558 .. 2488868
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g03120.2

Sequence Viewer

Length: 951 bp
ATGAATAAGATTCATGTTGGCATATTGTTTGATTGGCAGCTTGAGACAATATTTCTTTCAACACTTTATAATATTTCTAGACTCTTCAAAAGTCCCAACCTAATATCAACTCTTGCAACGGATTTAGTATGTTGCAACAACATCATAATGAAAGCACACACAAAGGCTTACTTTAAGCAATTTGAATCCTTTAGGGACTGTCTACACTTCATGACACATACTCCTTTGGAACCAATACAGAGCAATTTTCTTCTATGTATACTTGAGGGATTTACTTATAGAGATATGCTTCGAGCATTTCGTAAACATTCGTACAAGTCTCACAATGAGAAATCATGTATACATGAGTTTACTAAAATTTTAGTTCAGTATTACAAATGGGCATGTGTAACCTTTTGTGTTCAACATCATTTGGCGATTTGTACTATAGATCTATTTTCCACTGTTCTTAGGCCTGGTTTGGTACTGAGCTTCAGCTTTTTTTCACAGTTTTTGGTGAAAAAAAGCCAAAAACAAGAAGCTGCAAAACCCAGCTTTGAAAAACCGAATACTGTTTTTTTTTTTTTTTTAAAAGCACTTTTACATAAAAGTTTACCAAACACTCTACTGTTTTATTTCACAGCTGCTTATTCTCACAGCACAGTAGAAGCAACTTTTTTTTCAAAGTACAGCAATACCAAACCAGCCCTTAATTGTAATGGTGTTGCTGCTTATTCTCATGTGCATGCGCATGCATATTTTATAAACATTTCATTACTTAAGATATCCTTTTTTAATCTCCACTTCTGGAGAGTTGAATCATTGGAACCTATAATTTTATCATGCTTTAGACAAGAGACACAACACACAATAAAATTGCCATCATGCTTAGGCATGCAACAATTTAGCAGTGCTAAGTCCATGGATATTCTTATTGAGATTAATCCATATGACATCTTTATAACTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

36.83

Weight (kDa)

9.03

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 69, 743, 941
Acc16I TGCGCA 1 cut(s) 729
AccI GTMKAC 3 cut(s) 202, 259, 340
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 457
AfaI GTAC 4 cut(s) 314, 424, 465, 668
AflII CTTAAG 1 cut(s) 758
AgsI TTSAA 7 cut(s) 60, 88, 185, 404, 539, 663, 797
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 6 cut(s) 40, 471, 477, 521, 534, 623
AluI AGCT 6 cut(s) 40, 471, 477, 521, 534, 623
Alw26I GTCTC 3 cut(s) 38, 324, 830
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 4 cut(s) 37, 521, 623, 707
ApoI RAATTY 1 cut(s) 357
AseI ATTAAT 1 cut(s) 921
AspLEI GCGC 1 cut(s) 730
AsuHPI GGTGA 1 cut(s) 508
BbvI GCAGC 4 cut(s) 49, 508, 610, 694
BccI CCATC 1 cut(s) 868
BciT130I CCWGG 1 cut(s) 456
BcoDI GTCTC 3 cut(s) 38, 324, 830
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 1 cut(s) 758
BglII AGATCT 1 cut(s) 430
BisI GCNGC 4 cut(s) 38, 522, 624, 708
BlsI GCNGC 4 cut(s) 39, 523, 625, 709
Bme1390I CCNGG 1 cut(s) 456
BmiI GGNNCC 2 cut(s) 231, 807
BmrFI CCNGG 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 808
Bpu10I CCTNAGC 1 cut(s) 868
BpuEI CTTGAG 2 cut(s) 62, 284
BsaJI CCNNGG 1 cut(s) 900
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 900
BseMII CTCAG 1 cut(s) 458
BseXI GCAGC 4 cut(s) 49, 508, 610, 694
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 1 cut(s) 454
BslFI GGGAC 2 cut(s) 78, 209
BsmAI GTCTC 3 cut(s) 38, 324, 830
BsmFI GGGAC 2 cut(s) 78, 209
BsnI GGCC 1 cut(s) 454
Bsp143I GATC 1 cut(s) 430
Bsp19I CCATGG 1 cut(s) 900
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 459
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 231, 807
BspTI CTTAAG 1 cut(s) 758
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 1 cut(s) 430
BssNAI GTATAC 2 cut(s) 260, 341
BssT1I CCWWGG 1 cut(s) 900
Bst1107I GTATAC 2 cut(s) 260, 341
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 6 cut(s) 200, 445, 489, 553, 609, 643
Bst6I CTCTTC 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 726, 732, 875
BstDEI CTNAG 4 cut(s) 449, 467, 868, 894
BstDSI CCRYGG 1 cut(s) 900
BstHHI GCGC 1 cut(s) 730
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 3 cut(s) 38, 324, 830
BstMBI GATC 1 cut(s) 430
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 4 cut(s) 387, 728, 734, 877
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 4 cut(s) 49, 508, 610, 694
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BstZ17I GTATAC 2 cut(s) 260, 341
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 900
BtsI GCAGTG 1 cut(s) 895
BtsIMutI CAGTG 2 cut(s) 441, 895
Cac8I GCNNGC 3 cut(s) 726, 732, 875
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 730
Csp6I GTAC 4 cut(s) 313, 423, 464, 667
CviQI GTAC 4 cut(s) 313, 423, 464, 667
DdeI CTNAG 4 cut(s) 449, 467, 868, 894
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
DraI TTTAAA 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 900
Eco147I AGGCCT 1 cut(s) 454
Eco32I GATATC 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 900
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 900
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 752, 784
FaqI GGGAC 2 cut(s) 78, 209
FauNDI CATATG 1 cut(s) 928
FblI GTMKAC 3 cut(s) 202, 259, 340
Fnu4HI GCNGC 4 cut(s) 38, 522, 624, 708
Fsp4HI GCNGC 4 cut(s) 38, 522, 624, 708
FspAI RTGCGCAY 1 cut(s) 729
FspBI CTAG 1 cut(s) 78
FspI TGCGCA 1 cut(s) 729
GlaI GCGC 1 cut(s) 729
GluI GCNGC 4 cut(s) 38, 522, 624, 708
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 808
HaeIII GGCC 1 cut(s) 454
HhaI GCGC 1 cut(s) 730
Hin6I GCGC 1 cut(s) 728
HinP1I GCGC 1 cut(s) 728
HinfI GANTC 4 cut(s) 10, 81, 185, 797
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 6 cut(s) 203, 260, 305, 341, 351, 593
Hpy188III TCNNGA 3 cut(s) 78, 211, 787
Hpy8I GTNNAC 6 cut(s) 203, 260, 305, 341, 351, 593
HpyCH4III ACNGT 6 cut(s) 200, 445, 489, 553, 609, 643
HpyCH4V TGCA 6 cut(s) 116, 135, 524, 724, 734, 877
HpyF3I CTNAG 4 cut(s) 449, 467, 868, 894
HspAI GCGC 1 cut(s) 728
Kzo9I GATC 1 cut(s) 430
LpnPI CCDG 5 cut(s) 441, 468, 544, 696, 772
Lsp1109I GCAGC 4 cut(s) 49, 508, 610, 694
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 2 cut(s) 76, 242
MflI RGATCY 1 cut(s) 430
MluCI AATT 7 cut(s) 179, 244, 357, 691, 813, 854, 881
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 736
MseI TTAA 7 cut(s) 174, 569, 690, 759, 774, 921, 949
MslI CAYNNNNRTG 3 cut(s) 146, 723, 729
MspA1I CMGCKG 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 900
NdeI CATATG 1 cut(s) 928
NdeII GATC 1 cut(s) 430
NlaIV GGNNCC 2 cut(s) 231, 807
NsbI TGCGCA 1 cut(s) 729
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 4 cut(s) 387, 728, 734, 877
PaeI GCATGC 3 cut(s) 728, 734, 877
PagI TCATGA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PfeI GAWTC 3 cut(s) 10, 185, 797
PkrI GCNGC 4 cut(s) 39, 523, 625, 709
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 921
PsiI TTATAA 3 cut(s) 69, 743, 941
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 231, 807
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 4 cut(s) 314, 424, 465, 668
RsaNI GTAC 4 cut(s) 313, 423, 464, 667
RseI CAYNNNNRTG 3 cut(s) 146, 723, 729
SaqAI TTAA 7 cut(s) 174, 569, 690, 759, 774, 921, 949
SatI GCNGC 4 cut(s) 38, 522, 624, 708
Sau3AI GATC 1 cut(s) 430
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 456
SetI ASST 9 cut(s) 42, 102, 395, 473, 479, 523, 536, 625, 811
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 3 cut(s) 146, 723, 729
SmlI CTYRAG 3 cut(s) 41, 263, 758
SmoI CTYRAG 3 cut(s) 41, 263, 758
SphI GCATGC 3 cut(s) 728, 734, 877
Sse9I AATT 7 cut(s) 179, 244, 357, 691, 813, 854, 881
SseBI AGGCCT 1 cut(s) 454
SspI AATATT 2 cut(s) 51, 73
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 6 cut(s) 200, 445, 489, 553, 609, 643
TaqI TCGA 1 cut(s) 292
TasI AATT 7 cut(s) 179, 244, 357, 691, 813, 854, 881
TatI WGTACW 2 cut(s) 422, 666
TfiI GAWTC 3 cut(s) 10, 185, 797
Tru1I TTAA 7 cut(s) 174, 569, 690, 759, 774, 921, 949
Tru9I TTAA 7 cut(s) 174, 569, 690, 759, 774, 921, 949
TscAI CASTG 2 cut(s) 448, 895
TseI GCWGC 4 cut(s) 37, 521, 623, 707
TspDTI ATGAA 4 cut(s) 17, 164, 199, 741
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 2 cut(s) 448, 895
Vha464I CTTAAG 1 cut(s) 758
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 1 cut(s) 357
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 4 cut(s) 387, 728, 734, 877
XmiI GTMKAC 3 cut(s) 202, 259, 340
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.