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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 57 |
| AciI | CCGC | 1 cut(s) | 625 |
| AclWI | GGATC | 1 cut(s) | 550 |
| AcsI | RAATTY | 2 cut(s) | 172, 732 |
| AcuI | CTGAAG | 3 cut(s) | 109, 180, 581 |
| AcyI | GRCGYC | 1 cut(s) | 20 |
| AfaI | GTAC | 2 cut(s) | 314, 384 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 75, 116, 518 |
| AgsI | TTSAA | 4 cut(s) | 85, 556, 730, 802 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 146 |
| AhlI | ACTAGT | 1 cut(s) | 344 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 243, 275 |
| AleI | CACNNNNGTG | 1 cut(s) | 48 |
| AluBI | AGCT | 3 cut(s) | 123, 164, 779 |
| AluI | AGCT | 3 cut(s) | 123, 164, 779 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 395 |
| Alw26I | GTCTC | 3 cut(s) | 216, 289, 353 |
| AlwI | GGATC | 1 cut(s) | 550 |
| ApeKI | GCWGC | 2 cut(s) | 7, 120 |
| ApoI | RAATTY | 2 cut(s) | 172, 732 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 768, 800 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 407 |
| AspLEI | GCGC | 2 cut(s) | 58, 534 |
| AspS9I | GGNCC | 1 cut(s) | 480 |
| AsuHPI | GGTGA | 2 cut(s) | 99, 656 |
| AvaII | GGWCC | 1 cut(s) | 480 |
| BbsI | GAAGAC | 1 cut(s) | 317 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 395 |
| BbvI | GCAGC | 1 cut(s) | 132 |
| BccI | CCATC | 1 cut(s) | 520 |
| BceAI | ACGGC | 2 cut(s) | 193, 545 |
| BcoDI | GTCTC | 3 cut(s) | 216, 289, 353 |
| BcuI | ACTAGT | 1 cut(s) | 344 |
| BfaI | CTAG | 2 cut(s) | 345, 711 |
| BfmI | CTRYAG | 2 cut(s) | 8, 780 |
| BisI | GCNGC | 2 cut(s) | 8, 121 |
| BlsI | GCNGC | 2 cut(s) | 9, 122 |
| Bme18I | GGWCC | 1 cut(s) | 480 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 146 |
| BmgT120I | GGNCC | 1 cut(s) | 480 |
| BmsI | GCATC | 2 cut(s) | 98, 795 |
| BpiI | GAAGAC | 1 cut(s) | 317 |
| BpmI | CTGGAG | 1 cut(s) | 13 |
| BpuEI | CTTGAG | 1 cut(s) | 335 |
| BsaAI | YACGTR | 3 cut(s) | 256, 316, 386 |
| BsaHI | GRCGYC | 1 cut(s) | 20 |
| BsaI | GGTCTC | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 3 cut(s) | 46, 246, 527 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 75, 116, 518 |
| BseDI | CCNNGG | 3 cut(s) | 46, 246, 527 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 75, 116, 518 |
| BseMII | CTCAG | 2 cut(s) | 112, 345 |
| BseXI | GCAGC | 1 cut(s) | 132 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 395 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 75, 116, 518 |
| BsmAI | GTCTC | 3 cut(s) | 216, 289, 353 |
| BsmBI | CGTCTC | 1 cut(s) | 216 |
| BsmI | GAATGC | 1 cut(s) | 273 |
| Bso31I | GGTCTC | 1 cut(s) | 289 |
| Bsp1286I | GDGCHC | 2 cut(s) | 29, 395 |
| Bsp143I | GATC | 3 cut(s) | 272, 421, 542 |
| BspACI | CCGC | 1 cut(s) | 625 |
| BspCNI | CTCAG | 2 cut(s) | 111, 344 |
| BspHI | TCATGA | 1 cut(s) | 291 |
| BspMAI | CTGCAG | 1 cut(s) | 12 |
| BspPI | GGATC | 1 cut(s) | 550 |
| BspTNI | GGTCTC | 1 cut(s) | 289 |
| BssECI | CCNNGG | 3 cut(s) | 46, 246, 527 |
| BssMI | GATC | 3 cut(s) | 272, 421, 542 |
| BssNI | GRCGYC | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 1 cut(s) | 246 |
| Bst6I | CTCTTC | 1 cut(s) | 424 |
| BstACI | GRCGYC | 1 cut(s) | 20 |
| BstBAI | YACGTR | 3 cut(s) | 256, 316, 386 |
| BstC8I | GCNNGC | 1 cut(s) | 716 |
| BstDEI | CTNAG | 2 cut(s) | 98, 331 |
| BstDSI | CCRYGG | 1 cut(s) | 527 |
| BstHHI | GCGC | 2 cut(s) | 58, 534 |
| BstKTI | GATC | 3 cut(s) | 275, 424, 545 |
| BstMAI | GTCTC | 3 cut(s) | 216, 289, 353 |
| BstMBI | GATC | 3 cut(s) | 272, 421, 542 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 754 |
| BstNSI | RCATGY | 3 cut(s) | 607, 718, 761 |
| BstSFI | CTRYAG | 2 cut(s) | 8, 780 |
| BstSNI | TACGTA | 1 cut(s) | 386 |
| BstV1I | GCAGC | 1 cut(s) | 132 |
| BstV2I | GAAGAC | 1 cut(s) | 317 |
| BstX2I | RGATCY | 1 cut(s) | 542 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 50 |
| BstYI | RGATCY | 1 cut(s) | 542 |
| BtgI | CCRYGG | 1 cut(s) | 527 |
| BtsIMutI | CAGTG | 2 cut(s) | 133, 411 |
| Cac8I | GCNNGC | 1 cut(s) | 716 |
| CciI | TCATGA | 1 cut(s) | 291 |
| CfoI | GCGC | 2 cut(s) | 58, 534 |
| Cfr13I | GGNCC | 1 cut(s) | 480 |
| CseI | GACGC | 1 cut(s) | 9 |
| Csp6I | GTAC | 2 cut(s) | 313, 383 |
| CviJI | RGCY | 5 cut(s) | 123, 138, 164, 208, 779 |
| CviKI_1 | RGCY | 5 cut(s) | 123, 138, 164, 208, 779 |
| CviQI | GTAC | 2 cut(s) | 313, 383 |
| DdeI | CTNAG | 2 cut(s) | 98, 331 |
| DpnI | GATC | 3 cut(s) | 274, 423, 544 |
| DpnII | GATC | 3 cut(s) | 272, 421, 542 |
| DraI | TTTAAA | 2 cut(s) | 73, 178 |
| DriI | GACNNNNNGTC | 1 cut(s) | 146 |
| Eam1104I | CTCTTC | 1 cut(s) | 424 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 146 |
| EarI | CTCTTC | 1 cut(s) | 424 |
| EciI | GGCGGA | 1 cut(s) | 640 |
| Eco105I | TACGTA | 1 cut(s) | 386 |
| Eco130I | CCWWGG | 1 cut(s) | 246 |
| Eco31I | GGTCTC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 1 cut(s) | 480 |
| Eco57I | CTGAAG | 3 cut(s) | 109, 180, 581 |
| EcoO109I | RGGNCCY | 1 cut(s) | 480 |
| EcoT14I | CCWWGG | 1 cut(s) | 246 |
| EcoT22I | ATGCAT | 2 cut(s) | 720, 810 |
| ErhI | CCWWGG | 1 cut(s) | 246 |
| Esp3I | CGTCTC | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 2 cut(s) | 8, 121 |
| Fsp4HI | GCNGC | 2 cut(s) | 8, 121 |
| FspBI | CTAG | 2 cut(s) | 345, 711 |
| FspI | TGCGCA | 1 cut(s) | 57 |
| GlaI | GCGC | 2 cut(s) | 57, 533 |
| GluI | GCNGC | 2 cut(s) | 8, 121 |
| GsuI | CTGGAG | 1 cut(s) | 13 |
| HgaI | GACGC | 1 cut(s) | 9 |
| HhaI | GCGC | 2 cut(s) | 58, 534 |
| Hin1I | GRCGYC | 1 cut(s) | 20 |
| Hin6I | GCGC | 2 cut(s) | 56, 532 |
| HinP1I | GCGC | 2 cut(s) | 56, 532 |
| HinfI | GANTC | 3 cut(s) | 288, 628, 688 |
| HphI | GGTGA | 2 cut(s) | 99, 656 |
| Hpy166II | GTNNAC | 3 cut(s) | 411, 527, 647 |
| Hpy188III | TCNNGA | 5 cut(s) | 158, 292, 375, 516, 802 |
| Hpy8I | GTNNAC | 3 cut(s) | 411, 527, 647 |
| Hpy99I | CGWCG | 2 cut(s) | 25, 152 |
| HpyAV | CCTTC | 4 cut(s) | 10, 562, 615, 808 |
| HpyCH4IV | ACGT | 3 cut(s) | 255, 315, 385 |
| HpyCH4V | TGCA | 5 cut(s) | 10, 607, 718, 790, 808 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 754 |
| HpyF3I | CTNAG | 2 cut(s) | 98, 331 |
| HpySE526I | ACGT | 3 cut(s) | 255, 315, 385 |
| Hsp92I | GRCGYC | 1 cut(s) | 20 |
| HspAI | GCGC | 2 cut(s) | 56, 532 |
| Kzo9I | GATC | 3 cut(s) | 272, 421, 542 |
| LmnI | GCTCC | 1 cut(s) | 32 |
| LpnPI | CCDG | 4 cut(s) | 43, 171, 318, 501 |
| Lsp1109I | GCAGC | 1 cut(s) | 132 |
| LweI | GCATC | 2 cut(s) | 98, 795 |
| MaeI | CTAG | 2 cut(s) | 345, 711 |
| MaeII | ACGT | 3 cut(s) | 255, 315, 385 |
| MaeIII | GTNAC | 4 cut(s) | 340, 367, 447, 505 |
| MalI | GATC | 3 cut(s) | 274, 423, 544 |
| MboI | GATC | 3 cut(s) | 272, 421, 542 |
| MboII | GAAGA | 4 cut(s) | 276, 317, 441, 574 |
| MflI | RGATCY | 1 cut(s) | 542 |
| MhlI | GDGCHC | 2 cut(s) | 29, 395 |
| MluCI | AATT | 6 cut(s) | 103, 172, 608, 615, 725, 732 |
| MmeI | TCCRAC | 1 cut(s) | 148 |
| MnlI | CCTC | 3 cut(s) | 41, 512, 667 |
| Mph1103I | ATGCAT | 2 cut(s) | 720, 810 |
| MroXI | GAANNNNTTC | 1 cut(s) | 407 |
| MseI | TTAA | 5 cut(s) | 72, 177, 233, 485, 611 |
| MslI | CAYNNNNRTG | 4 cut(s) | 48, 219, 361, 443 |
| Mva1269I | GAATGC | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 754 |
| NdeII | GATC | 3 cut(s) | 272, 421, 542 |
| NmuCI | GTSAC | 4 cut(s) | 340, 367, 447, 505 |
| NsbI | TGCGCA | 1 cut(s) | 57 |
| NsiI | ATGCAT | 2 cut(s) | 720, 810 |
| NspI | RCATGY | 3 cut(s) | 607, 718, 761 |
| OliI | CACNNNNGTG | 1 cut(s) | 48 |
| PaeI | GCATGC | 1 cut(s) | 718 |
| PagI | TCATGA | 1 cut(s) | 291 |
| PctI | GAATGC | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 407 |
| PfeI | GAWTC | 3 cut(s) | 288, 628, 688 |
| PkrI | GCNGC | 2 cut(s) | 9, 122 |
| Ppu21I | YACGTR | 3 cut(s) | 256, 316, 386 |
| PpuMI | RGGWCCY | 1 cut(s) | 480 |
| Psp5II | RGGWCCY | 1 cut(s) | 480 |
| PspPI | GGNCC | 1 cut(s) | 480 |
| PspPPI | RGGWCCY | 1 cut(s) | 480 |
| PstI | CTGCAG | 1 cut(s) | 12 |
| PsuI | RGATCY | 1 cut(s) | 542 |
| RsaI | GTAC | 2 cut(s) | 314, 384 |
| RsaNI | GTAC | 2 cut(s) | 313, 383 |
| RseI | CAYNNNNRTG | 4 cut(s) | 48, 219, 361, 443 |
| SaqAI | TTAA | 5 cut(s) | 72, 177, 233, 485, 611 |
| SatI | GCNGC | 2 cut(s) | 8, 121 |
| Sau3AI | GATC | 3 cut(s) | 272, 421, 542 |
| Sau96I | GGNCC | 1 cut(s) | 480 |
| SduI | GDGCHC | 2 cut(s) | 29, 395 |
| SfaNI | GCATC | 2 cut(s) | 98, 795 |
| SfcI | CTRYAG | 2 cut(s) | 8, 780 |
| SinI | GGWCC | 1 cut(s) | 480 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 48, 219, 361, 443 |
| SmlI | CTYRAG | 1 cut(s) | 350 |
| SmoI | CTYRAG | 1 cut(s) | 350 |
| SnaBI | TACGTA | 1 cut(s) | 386 |
| SpeI | ACTAGT | 1 cut(s) | 344 |
| SphI | GCATGC | 1 cut(s) | 718 |
| Sse9I | AATT | 6 cut(s) | 103, 172, 608, 615, 725, 732 |
| SsiI | CCGC | 1 cut(s) | 625 |
| SspMI | CTAG | 2 cut(s) | 345, 711 |
| StyI | CCWWGG | 1 cut(s) | 246 |
| TaiI | ACGT | 3 cut(s) | 258, 318, 388 |
| TasI | AATT | 6 cut(s) | 103, 172, 608, 615, 725, 732 |
| TfiI | GAWTC | 3 cut(s) | 288, 628, 688 |
| Tru1I | TTAA | 5 cut(s) | 72, 177, 233, 485, 611 |
| Tru9I | TTAA | 5 cut(s) | 72, 177, 233, 485, 611 |
| TscAI | CASTG | 2 cut(s) | 133, 418 |
| TseFI | GTSAC | 4 cut(s) | 340, 367, 447, 505 |
| TseI | GCWGC | 2 cut(s) | 7, 120 |
| Tsp45I | GTSAC | 4 cut(s) | 340, 367, 447, 505 |
| TspDTI | ATGAA | 5 cut(s) | 280, 296, 433, 572, 680 |
| TspGWI | ACGGA | 2 cut(s) | 136, 766 |
| TspRI | CASTG | 2 cut(s) | 133, 418 |
| VpaK11BI | GGWCC | 1 cut(s) | 480 |
| XapI | RAATTY | 2 cut(s) | 172, 732 |
| XceI | RCATGY | 3 cut(s) | 607, 718, 761 |
| XmnI | GAANNNNTTC | 1 cut(s) | 407 |
| XspI | CTAG | 2 cut(s) | 345, 711 |
| Zsp2I | ATGCAT | 2 cut(s) | 720, 810 |