pycom16g20200

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
17891230 .. 17891570
341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20200.2

Sequence Viewer

Length: 297 bp
ATGGCTTGCCCATCTAACATTTGCTTAGATTTGAGTCTCAAGATTGATACAGACGAGCAGCGTCAGGATAACATATGGCGCCCGTCCTTTTCATCTTCTAATGGTCCTCTTACGGTTGGGGACTCTGTGATGAAGAATAACATAACTGCTACAGTGGTAGCTAGGAATCTTCTCAATCCAAAGGATAACAGAATCCTTTCAAACCGGTCTGATGAGGCAGCCGTTCAAGACTCATTGGCTTTCAGTGTTCAATGTGCGGGCTTTGTATCCAATATGGGCCAGCGTTGCAGGTCTTAA

Protein Analysis

99

Amino Acids

10.71

Weight (kDa)

6.1

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000120)

Species Orthologous Gene IDs
malus_domestica MD00G1178700.v1.1 MD00G1192600.v1.1 MD01G1178800.v1.1 MD08G1118400.v1.1 MD11G1121800.v1.1 MD11G1175900.v1.1 MD14G1073500.v1.1 MD16G1171800.v1.1
prunus_persica Prupe.5G057200_v2.0.a1 Prupe.7G095400_v2.0.a1 Prupe.7G095500_v2.0.a1 Prupe.8G037200_v2.0.a1
pyrus_communis pycom01g00040 pycom01g00270 pycom01g00550 pycom01g00730 pycom01g00740 pycom01g00820 pycom01g00960 pycom01g01060 pycom01g01180 pycom01g01580 pycom01g01700 pycom01g01770 pycom01g01970 pycom01g02520 pycom01g03120 pycom01g03510 pycom01g07770 pycom01g07800 pycom01g11420 pycom02g06240 pycom02g13440 pycom02g16920 pycom02g17900 pycom02g18220 pycom02g21560 pycom03g10720 pycom03g11710 pycom03g11930 pycom04g05770 pycom04g07600 pycom04g07920 pycom04g07980 pycom04g08250 pycom04g09780 pycom04g12720 pycom04g13700 pycom05g00180 pycom05g01110 pycom05g05940 pycom05g06250 pycom05g06870 pycom05g08470 pycom05g08920 pycom05g09050 pycom05g09420 pycom05g14090 pycom06g05150 pycom06g05430 pycom06g06950 pycom06g09990 pycom06g15520 pycom07g08780 pycom07g11240 pycom07g11990 pycom07g14400 pycom07g27820 pycom08g07740 pycom08g10980 pycom08g12370 pycom09g03580 pycom09g09700 pycom09g13450 pycom09g14910 pycom10g01230 pycom10g02170 pycom10g06850 pycom10g08040 pycom10g08250 pycom10g10100 pycom10g15420 pycom1125g00010 pycom11g04190 pycom11g14150 pycom11g15090 pycom11g15720 pycom11g16230 pycom11g17180 pycom11g20110 pycom1236g00020 pycom12426g00290 pycom12426g00350 pycom12426g00660 pycom12426g00700 pycom12462g00070 pycom12463g00060 pycom12473g00010 pycom12503g00010 pycom12517g00150 pycom1256g00180 pycom1256g00220 pycom12575g00030 pycom12581g00010 pycom12596g00090 pycom12612g00020 pycom12621g00090 pycom12633g00040 pycom12637g00020 pycom12658g00010 pycom12658g00020 pycom12659g00070 pycom12668g00040 pycom12668g00050 pycom12674g00040 pycom12681g00050 pycom12681g00060 pycom12690g00020 pycom12695g00020 pycom12g08040 pycom12g08660 pycom12g09550 pycom12g09560 pycom13g03230 pycom13g18200 pycom13g19230 pycom13g20140 pycom13g20700 pycom13g22210 pycom13g23170 pycom13g25290 pycom13g25590 pycom13g25980 pycom13g26010 pycom13g26280 pycom13g26350 pycom13g27560 pycom13g27570 pycom13g27680 pycom13g27780 pycom13g28070 pycom13g28140 pycom13g28230 pycom13g28280 pycom13g29100 pycom1498g00010 pycom14g01730 pycom14g08250 pycom14g08660 pycom14g09260 pycom14g18640 pycom15g28640 pycom15g30060 pycom15g35030 pycom15g37780 pycom1604g00160 pycom1609g00100 pycom1681g00030 pycom1683g00020 pycom16g13500 pycom16g17920 pycom16g18140 pycom16g19340 pycom16g20200 pycom16g21370 pycom16g22140 pycom16g23170 pycom16g23450 pycom16g25040 pycom16g25790 pycom1729g00130 pycom1729g00180 pycom1739g00060 pycom1774g00010 pycom17g06230 pycom17g15230 pycom17g16620 pycom17g17340 pycom17g17660 pycom17g17810 pycom17g18150 pycom17g19280 pycom17g25050 pycom17g25100 pycom17g25680 pycom17g25690 pycom1880g00030 pycom1912g00020 pycom2002g00120 pycom2002g00160 pycom2177g00180 pycom2185g00070 pycom2189g00010 pycom2218g00030 pycom2320g00010 pycom2328g00040 pycom2339g00100 pycom2424g00030 pycom2466g00010 pycom2552g00010 pycom2599g00010 pycom2627g00040 pycom2749g00080 pycom2789g00010 pycom3027g00010 pycom394g00080 pycom436g00190 pycom436g00310 pycom436g00350 pycom436g00410 pycom436g00420 pycom436g00430 pycom443g00010 pycom505g00030 pycom520g00140 pycom520g00220 pycom520g00620 pycom520g00650 pycom555g00010 pycom57g00030 pycom608g00020 pycom723g00040 pycom775g00040 pycom808g00350 pycom808g00590 pycom808g00640 pycom889g00030 pycom908g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 78
AciI CCGC 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 3 cut(s) 201, 227, 251
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 58, 218
AsiGI ACCGGT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 104, 277
AvaII GGWCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 70, 230
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 206
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 279
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 2 cut(s) 59, 219
BlsI GCNGC 2 cut(s) 60, 220
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 104, 277
BmiI GGNNCC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 204
BseXI GCAGC 2 cut(s) 70, 230
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 78
BshTI ACCGGT 1 cut(s) 204
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 279
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssNI GRCGYC 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 115, 154
BstACI GRCGYC 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 7, 259, 281
BstDEI CTNAG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 70, 230
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 159, 250
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 3 cut(s) 7, 259, 281
CfoI GCGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 104, 277
CseI GACGC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 204
CviJI RGCY 6 cut(s) 5, 161, 221, 239, 261, 279
CviKI_1 RGCY 6 cut(s) 5, 161, 221, 239, 261, 279
DdeI CTNAG 1 cut(s) 25
DinI GGCGCC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
FaiI YATR 4 cut(s) 74, 76, 143, 275
FaqI GGGAC 1 cut(s) 134
FauI CCCGC 1 cut(s) 250
FauNDI CATATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 59, 219
Fsp4HI GCNGC 2 cut(s) 59, 219
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 80
GluI GCNGC 2 cut(s) 59, 219
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 1 cut(s) 279
HapII CCGG 1 cut(s) 205
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 5 cut(s) 34, 122, 166, 192, 230
HpaII CCGG 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 40, 65, 227
HpyCH4III ACNGT 2 cut(s) 115, 154
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 79
HspAI GCGC 1 cut(s) 79
KasI GGCGCC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 50, 218, 274, 293
Lsp1109I GCAGC 2 cut(s) 70, 230
MaeI CTAG 1 cut(s) 162
MboII GAAGA 3 cut(s) 87, 145, 161
Mly113I GGCGCC 1 cut(s) 79
MlyI GAGTC 3 cut(s) 43, 116, 224
MnlI CCTC 2 cut(s) 117, 208
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 1 cut(s) 295
MspI CCGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 285
NarI GGCGCC 1 cut(s) 79
NdeI CATATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 166, 192
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 2 cut(s) 60, 220
PleI GAGTC 3 cut(s) 42, 116, 224
PluTI GGCGCC 1 cut(s) 82
PpsI GAGTC 3 cut(s) 42, 116, 224
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 2 cut(s) 104, 277
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 59, 219
Sau96I GGNCC 2 cut(s) 104, 277
SchI GAGTC 3 cut(s) 43, 116, 224
SetI ASST 2 cut(s) 163, 293
SfcI CTRYAG 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 80
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 1 cut(s) 257
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 115, 154
TfiI GAWTC 2 cut(s) 166, 192
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 2 cut(s) 159, 250
TseI GCWGC 2 cut(s) 58, 218
TspDTI ATGAA 2 cut(s) 81, 146
TspRI CASTG 2 cut(s) 159, 250
VpaK11BI GGWCC 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.