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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 512, 1025 |
| AciI | CCGC | 3 cut(s) | 92, 206, 593 |
| AclWI | GGATC | 6 cut(s) | 506, 563, 735, 744, 1019, 1107 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 632, 893, 1202 |
| AcuI | CTGAAG | 1 cut(s) | 270 |
| AfaI | GTAC | 4 cut(s) | 122, 327, 362, 753 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 256, 339 |
| AflIII | ACRYGT | 5 cut(s) | 366, 510, 844, 1023, 1131 |
| AgsI | TTSAA | 6 cut(s) | 189, 605, 1045, 1061, 1175, 1187 |
| AhlI | ACTAGT | 1 cut(s) | 83 |
| AjnI | CCWGG | 2 cut(s) | 493, 1006 |
| AluBI | AGCT | 2 cut(s) | 767, 816 |
| AluI | AGCT | 2 cut(s) | 767, 816 |
| Alw26I | GTCTC | 1 cut(s) | 911 |
| AlwI | GGATC | 6 cut(s) | 506, 563, 735, 744, 1019, 1107 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 689 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApoI | RAATTY | 3 cut(s) | 632, 893, 1202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 854 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 850 |
| AsuII | TTCGAA | 1 cut(s) | 172 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 344, 377 |
| BanII | GRGCYC | 1 cut(s) | 70 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 309, 341 |
| BccI | CCATC | 4 cut(s) | 337, 452, 523, 580 |
| BceAI | ACGGC | 1 cut(s) | 1069 |
| BciT130I | CCWGG | 2 cut(s) | 495, 1008 |
| BclI | TGATCA | 1 cut(s) | 757 |
| BcoDI | GTCTC | 1 cut(s) | 911 |
| BcuI | ACTAGT | 1 cut(s) | 83 |
| BfaI | CTAG | 1 cut(s) | 84 |
| BisI | GCNGC | 1 cut(s) | 594 |
| BlsI | GCNGC | 1 cut(s) | 595 |
| Bme1390I | CCNGG | 2 cut(s) | 495, 1008 |
| BmiI | GGNNCC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 2 cut(s) | 495, 1008 |
| BmrI | ACTGGG | 1 cut(s) | 1119 |
| BmsI | GCATC | 1 cut(s) | 1076 |
| BmuI | ACTGGG | 1 cut(s) | 1119 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1021, 1053 |
| BpmI | CTGGAG | 2 cut(s) | 549, 924 |
| Bpu10I | CCTNAGC | 1 cut(s) | 723 |
| Bpu14I | TTCGAA | 1 cut(s) | 172 |
| BsaAI | YACGTR | 1 cut(s) | 325 |
| BsaI | GGTCTC | 1 cut(s) | 911 |
| BsaJI | CCNNGG | 3 cut(s) | 6, 494, 1007 |
| BsaWI | WCCGGW | 1 cut(s) | 133 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 256, 339 |
| Bse1I | ACTGG | 3 cut(s) | 279, 1087, 1114 |
| Bse3DI | GCAATG | 1 cut(s) | 936 |
| BseBI | CCWGG | 2 cut(s) | 495, 1008 |
| BseDI | CCNNGG | 3 cut(s) | 6, 494, 1007 |
| BseGI | GGATG | 3 cut(s) | 348, 463, 1091 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 256, 339 |
| BseMI | GCAATG | 1 cut(s) | 936 |
| BseMII | CTCAG | 3 cut(s) | 348, 759, 1052 |
| BseNI | ACTGG | 3 cut(s) | 279, 1087, 1114 |
| Bsh1236I | CGCG | 2 cut(s) | 512, 1025 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiSI | CCGG | 2 cut(s) | 134, 389 |
| BslFI | GGGAC | 1 cut(s) | 122 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 256, 339 |
| BsmAI | GTCTC | 1 cut(s) | 911 |
| BsmFI | GGGAC | 1 cut(s) | 122 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 911 |
| Bsp119I | TTCGAA | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 70 |
| BspACI | CCGC | 3 cut(s) | 92, 206, 593 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 3 cut(s) | 349, 760, 1051 |
| BspFNI | CGCG | 2 cut(s) | 512, 1025 |
| BspHI | TCATGA | 3 cut(s) | 75, 447, 793 |
| BspLI | GGNNCC | 1 cut(s) | 69 |
| BspPI | GGATC | 6 cut(s) | 506, 563, 735, 744, 1019, 1107 |
| BspT104I | TTCGAA | 1 cut(s) | 172 |
| BspTNI | GGTCTC | 1 cut(s) | 911 |
| BsrDI | GCAATG | 1 cut(s) | 936 |
| BsrI | ACTGG | 3 cut(s) | 279, 1087, 1114 |
| BssECI | CCNNGG | 3 cut(s) | 6, 494, 1007 |
| Bst2UI | CCWGG | 2 cut(s) | 495, 1008 |
| Bst4CI | ACNGT | 1 cut(s) | 925 |
| Bst6I | CTCTTC | 1 cut(s) | 1040 |
| BstBAI | YACGTR | 1 cut(s) | 325 |
| BstBI | TTCGAA | 1 cut(s) | 172 |
| BstC8I | GCNNGC | 1 cut(s) | 1157 |
| BstDEI | CTNAG | 5 cut(s) | 357, 453, 723, 768, 1038 |
| BstDSI | CCRYGG | 1 cut(s) | 6 |
| BstF5I | GGATG | 3 cut(s) | 348, 463, 1091 |
| BstFNI | CGCG | 2 cut(s) | 512, 1025 |
| BstMAI | GTCTC | 1 cut(s) | 911 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 719 |
| BstNI | CCWGG | 2 cut(s) | 495, 1008 |
| BstNSI | RCATGY | 3 cut(s) | 370, 848, 1135 |
| BstSCI | CCNGG | 2 cut(s) | 493, 1006 |
| BstSNI | TACGTA | 1 cut(s) | 325 |
| BstUI | CGCG | 2 cut(s) | 512, 1025 |
| BstX2I | RGATCY | 3 cut(s) | 568, 727, 736 |
| BstYI | RGATCY | 3 cut(s) | 568, 727, 736 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 6 |
| BtsCI | GGATG | 3 cut(s) | 348, 463, 1091 |
| BtsIMutI | CAGTG | 3 cut(s) | 272, 930, 1171 |
| Cac8I | GCNNGC | 1 cut(s) | 1157 |
| CaiI | CAGNNNCTG | 1 cut(s) | 689 |
| CciI | TCATGA | 3 cut(s) | 75, 447, 793 |
| Csp6I | GTAC | 4 cut(s) | 121, 326, 361, 752 |
| CviAII | CATG | 9 cut(s) | 76, 367, 418, 448, 649, 761, 794, 845, 1132 |
| CviQI | GTAC | 4 cut(s) | 121, 326, 361, 752 |
| DdeI | CTNAG | 5 cut(s) | 357, 453, 723, 768, 1038 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 1040 |
| EarI | CTCTTC | 1 cut(s) | 1040 |
| Eco105I | TACGTA | 1 cut(s) | 325 |
| Eco24I | GRGCYC | 1 cut(s) | 70 |
| Eco31I | GGTCTC | 1 cut(s) | 911 |
| Eco57I | CTGAAG | 1 cut(s) | 270 |
| EcoRII | CCWGG | 2 cut(s) | 493, 1006 |
| EcoT38I | GRGCYC | 1 cut(s) | 70 |
| FaeI | CATG | 9 cut(s) | 79, 370, 421, 451, 652, 764, 797, 848, 1135 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1133, 1165 |
| FaqI | GGGAC | 1 cut(s) | 122 |
| FatI | CATG | 9 cut(s) | 75, 366, 417, 447, 648, 760, 793, 844, 1131 |
| FauNDI | CATATG | 1 cut(s) | 834 |
| FbaI | TGATCA | 1 cut(s) | 757 |
| Fnu4HI | GCNGC | 1 cut(s) | 594 |
| FokI | GGATG | 3 cut(s) | 355, 470, 1098 |
| FriOI | GRGCYC | 1 cut(s) | 70 |
| Fsp4HI | GCNGC | 1 cut(s) | 594 |
| FspBI | CTAG | 1 cut(s) | 84 |
| GluI | GCNGC | 1 cut(s) | 594 |
| GsuI | CTGGAG | 2 cut(s) | 549, 924 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 2 cut(s) | 134, 389 |
| Hin1II | CATG | 9 cut(s) | 79, 370, 421, 451, 652, 764, 797, 848, 1135 |
| HpaII | CCGG | 2 cut(s) | 134, 389 |
| HphI | GGTGA | 2 cut(s) | 22, 850 |
| Hpy188I | TCNGA | 6 cut(s) | 21, 43, 266, 528, 698, 1104 |
| Hpy188III | TCNNGA | 8 cut(s) | 76, 152, 448, 475, 566, 794, 903, 988 |
| Hpy99I | CGWCG | 1 cut(s) | 601 |
| HpyAV | CCTTC | 3 cut(s) | 214, 932, 1169 |
| HpyCH4III | ACNGT | 1 cut(s) | 925 |
| HpyCH4IV | ACGT | 4 cut(s) | 33, 324, 489, 1002 |
| HpyCH4V | TGCA | 3 cut(s) | 238, 670, 1191 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 719 |
| HpyF3I | CTNAG | 5 cut(s) | 357, 453, 723, 768, 1038 |
| HpySE526I | ACGT | 4 cut(s) | 33, 324, 489, 1002 |
| Hsp92II | CATG | 9 cut(s) | 79, 370, 421, 451, 652, 764, 797, 848, 1135 |
| Ksp22I | TGATCA | 1 cut(s) | 757 |
| LmnI | GCTCC | 2 cut(s) | 73, 821 |
| LweI | GCATC | 1 cut(s) | 1076 |
| MaeI | CTAG | 1 cut(s) | 84 |
| MaeII | ACGT | 4 cut(s) | 33, 324, 489, 1002 |
| MaeIII | GTNAC | 1 cut(s) | 952 |
| MboII | GAAGA | 7 cut(s) | 8, 329, 377, 589, 623, 1057, 1089 |
| MflI | RGATCY | 3 cut(s) | 568, 727, 736 |
| MhlI | GDGCHC | 1 cut(s) | 70 |
| MluCI | AATT | 8 cut(s) | 350, 429, 441, 632, 893, 942, 1180, 1202 |
| MluI | ACGCGT | 2 cut(s) | 510, 1023 |
| MlyI | GAGTC | 3 cut(s) | 16, 697, 832 |
| MmeI | TCCRAC | 1 cut(s) | 44 |
| MnlI | CCTC | 5 cut(s) | 573, 964, 1009, 1041, 1139 |
| MroXI | GAANNNNTTC | 1 cut(s) | 854 |
| MseI | TTAA | 3 cut(s) | 51, 891, 1216 |
| MspI | CCGG | 2 cut(s) | 134, 389 |
| MspR9I | CCNGG | 2 cut(s) | 495, 1008 |
| MvaI | CCWGG | 2 cut(s) | 495, 1008 |
| MvnI | CGCG | 2 cut(s) | 512, 1025 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 719 |
| NdeI | CATATG | 1 cut(s) | 834 |
| NlaIII | CATG | 9 cut(s) | 79, 370, 421, 451, 652, 764, 797, 848, 1135 |
| NlaIV | GGNNCC | 1 cut(s) | 69 |
| NmeAIII | GCCGAG | 1 cut(s) | 689 |
| NmuCI | GTSAC | 1 cut(s) | 952 |
| NspI | RCATGY | 3 cut(s) | 370, 848, 1135 |
| NspV | TTCGAA | 1 cut(s) | 172 |
| PagI | TCATGA | 3 cut(s) | 75, 447, 793 |
| PciI | ACATGT | 3 cut(s) | 366, 844, 1131 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 1 cut(s) | 854 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PkrI | GCNGC | 1 cut(s) | 595 |
| PleI | GAGTC | 3 cut(s) | 16, 697, 832 |
| PpsI | GAGTC | 3 cut(s) | 16, 697, 832 |
| Ppu21I | YACGTR | 1 cut(s) | 325 |
| PscI | ACATGT | 3 cut(s) | 366, 844, 1131 |
| Psp6I | CCWGG | 2 cut(s) | 493, 1006 |
| PspGI | CCWGG | 2 cut(s) | 493, 1006 |
| PspN4I | GGNNCC | 1 cut(s) | 69 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 353, 385 |
| PstNI | CAGNNNCTG | 1 cut(s) | 689 |
| PsuI | RGATCY | 3 cut(s) | 568, 727, 736 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| RsaI | GTAC | 4 cut(s) | 122, 327, 362, 753 |
| RsaNI | GTAC | 4 cut(s) | 121, 326, 361, 752 |
| SaqAI | TTAA | 3 cut(s) | 51, 891, 1216 |
| SatI | GCNGC | 1 cut(s) | 594 |
| SchI | GAGTC | 3 cut(s) | 16, 697, 832 |
| ScrFI | CCNGG | 2 cut(s) | 495, 1008 |
| SduI | GDGCHC | 1 cut(s) | 70 |
| SfaNI | GCATC | 1 cut(s) | 1076 |
| SfuI | TTCGAA | 1 cut(s) | 172 |
| SnaBI | TACGTA | 1 cut(s) | 325 |
| SpeI | ACTAGT | 1 cut(s) | 83 |
| Sse9I | AATT | 8 cut(s) | 350, 429, 441, 632, 893, 942, 1180, 1202 |
| SsiI | CCGC | 3 cut(s) | 92, 206, 593 |
| SspI | AATATT | 1 cut(s) | 666 |
| SspMI | CTAG | 1 cut(s) | 84 |
| StyD4I | CCNGG | 2 cut(s) | 493, 1006 |
| TaaI | ACNGT | 1 cut(s) | 925 |
| TaiI | ACGT | 4 cut(s) | 36, 327, 492, 1005 |
| TaqI | TCGA | 5 cut(s) | 172, 575, 660, 827, 1014 |
| TasI | AATT | 8 cut(s) | 350, 429, 441, 632, 893, 942, 1180, 1202 |
| TauI | GCSGC | 1 cut(s) | 596 |
| Tru1I | TTAA | 3 cut(s) | 51, 891, 1216 |
| Tru9I | TTAA | 3 cut(s) | 51, 891, 1216 |
| TscAI | CASTG | 3 cut(s) | 279, 930, 1171 |
| TseFI | GTSAC | 1 cut(s) | 952 |
| Tsp45I | GTSAC | 1 cut(s) | 952 |
| TspDTI | ATGAA | 6 cut(s) | 60, 92, 551, 782, 886, 949 |
| TspGWI | ACGGA | 1 cut(s) | 138 |
| TspRI | CASTG | 3 cut(s) | 279, 930, 1171 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| XapI | RAATTY | 3 cut(s) | 632, 893, 1202 |
| XceI | RCATGY | 3 cut(s) | 370, 848, 1135 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 340, 928 |
| XmnI | GAANNNNTTC | 1 cut(s) | 854 |
| XspI | CTAG | 1 cut(s) | 84 |