MD05G1048700.v1.1

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000106
Physical Location & Seq
Forward (+)
8278241 .. 8280099
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1048700.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGTATCTCAATATTCATATCAATGAAATATACAATTCCACAATTTATCTTGGCATCAGAGCACCGATCTTGGTGACTCTATTACGCTTCCGCCACAATAAGCTTTCCTCAAACACCATAGCCACCACAATGGCAGAACCAACCAAACCTGAAATCAAATCAGCCGAGAATTCCATGGAGTTCTCAGACCCGTATACCTTACACCACTCGGATCATCCGGGACTGATCCTAGTTTCCAAAACACTTGACGGAAACAATTACGGACAATGGAGCCGTGCTATGCGCATGGGTCTTAGCGCAAAGAACAAGATCGGATTTATCGATGGAACCATTAAGGCTCCAGCATCCTCAGACGCGAAACATGCAGCCTGGAAGAGATCTAACGACATGGTCACACTGTGGATTGTAAACTCAGTCCACTCAGACATAGCAGGCAGCATCATGTACACTGAAACCGCAGTTGCAGTTTGGAACGATCTGAGGGACAGATTCTCACAAAGCAGCGACTCAAGAATCTATCAAATTCGACAAGAAATTGTCGAGAACCGCCAAGGGCAGCTCACTGTCTCTGCCTATTACACCAAGATGAAAGCATTATGGGACGAGTTAGCATCCTACCATGACCCATTCACCTGCACTTGTGAAGGTTTGAAAGGGCTTGCTGAGCGAGAAGAGAAGGAAAGAGTTATGCAATTCCTAATGGGATTGAACGACTCTTACTCAGTCGTACGAGGCTCGATTTTGATGATGAGTCCACTTCCGGATACACGCCGAGTTCATGGCCTAATTCTCCAACACGAACGACAAATGGATGTGGCAAGTCGTCGTGAAATGGGGACGAGTTCTCATGCAATGCAAGTTCAGCGCCCTCCAGCGCCGTCATCATCTAATGACAGGTTTCCTAGCCCTTCTGCAGGTTCATTCTCACGCAAATCACTTAAGTGCACTTACTGTGATGGAGATGGGCACTTGGTGGACAGATGCTATTACATCATTGGGTTTCCAGTGGGCCACAAGTGGCATGGCAAAAATGTGAAGCCTAAGAACAGGAAATCAGCAGCCCATAATGCCGAGATCACCAAGCCTGCTGCGACCACCAACCCAACCACTTCCAACGGCCCAACTTTCACTACCGAGGAATATAATCAGATAATTGCCATGCTCCGCAACGGTAATGGTCAATCACTCGCAGATGCGAAAGGACATGGATACGAAGAGGATGATTGGCCTGGGCAAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_8 RVT_2

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

8.63

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 68 - 115 1.4e-21 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 94 - 272 5.4e-10 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
Acc16I TGCGCA 1 cut(s) 284
Acc36I ACCTGC 2 cut(s) 641, 905
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 4 cut(s) 91, 456, 547, 1165
AclWI GGATC 2 cut(s) 219, 220
AcsI RAATTY 2 cut(s) 169, 522
AdeI CACNNNGTG 2 cut(s) 399, 973
AfaI GTAC 2 cut(s) 446, 729
AfiI CCNNNNNNNGG 1 cut(s) 914
AflII CTTAAG 1 cut(s) 938
AgsI TTSAA 2 cut(s) 652, 709
AjnI CCWGG 2 cut(s) 368, 1228
AleI CACNNNNGTG 1 cut(s) 940
AluBI AGCT 2 cut(s) 103, 559
AluI AGCT 2 cut(s) 103, 559
Alw21I GWGCWC 2 cut(s) 64, 947
Alw26I GTCTC 1 cut(s) 571
Alw44I GTGCAC 1 cut(s) 943
AlwI GGATC 2 cut(s) 219, 220
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 4 cut(s) 781, 1009, 1117, 1226
ApaLI GTGCAC 1 cut(s) 943
ApeKI GCWGC 6 cut(s) 365, 435, 501, 556, 1058, 1088
ApoI RAATTY 2 cut(s) 169, 522
AspLEI GCGC 4 cut(s) 285, 299, 867, 877
AspS9I GGNCC 2 cut(s) 1009, 1118
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 85, 622, 1069
BaeGI GKGCMC 2 cut(s) 947, 969
Bbv12I GWGCWC 2 cut(s) 64, 947
BbvI GCAGC 6 cut(s) 377, 447, 513, 568, 1070, 1075
BccI CCATC 3 cut(s) 317, 950, 956
BceAI ACGGC 3 cut(s) 258, 862, 1132
BciT130I CCWGG 2 cut(s) 370, 1230
BciVI GTATCC 2 cut(s) 757, 1202
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 230, 903
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 2 cut(s) 868, 878
BfrI CTTAAG 1 cut(s) 938
BfuAI ACCTGC 2 cut(s) 641, 905
BfuI GTATCC 2 cut(s) 757, 1202
BglII AGATCT 1 cut(s) 377
BisI GCNGC 6 cut(s) 366, 436, 502, 557, 1059, 1089
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 6 cut(s) 367, 437, 503, 558, 1060, 1090
Bme1390I CCNGG 3 cut(s) 219, 370, 1230
BmgT120I GGNCC 2 cut(s) 1009, 1118
BmiI GGNNCC 3 cut(s) 272, 328, 339
BmrFI CCNGG 3 cut(s) 219, 370, 1230
BmsI GCATC 6 cut(s) 63, 353, 447, 620, 971, 1183
BpmI CTGGAG 2 cut(s) 324, 855
Bpu1102I GCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 4 cut(s) 174, 550, 1134, 1229
BsaWI WCCGGW 1 cut(s) 760
Bsc4I CCNNNNNNNGG 1 cut(s) 914
Bse1I ACTGG 1 cut(s) 1004
Bse3DI GCAATG 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 2 cut(s) 370, 1230
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 4 cut(s) 174, 550, 1134, 1229
BseGI GGATG 5 cut(s) 214, 344, 611, 817, 1225
BseLI CCNNNNNNNGG 1 cut(s) 914
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 7 cut(s) 198, 363, 426, 435, 470, 654, 735
BseNI ACTGG 1 cut(s) 1004
BseSI GKGCMC 2 cut(s) 947, 969
BseXI GCAGC 6 cut(s) 377, 447, 513, 568, 1070, 1075
BsgI GTGCAG 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 4 cut(s) 783, 1011, 1119, 1228
BshVI ATCGAT 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 64, 947
BsiSI CCGG 2 cut(s) 218, 761
BsiWI CGTACG 1 cut(s) 727
BslFI GGGAC 4 cut(s) 234, 497, 614, 850
BslI CCNNNNNNNGG 1 cut(s) 914
BsmAI GTCTC 1 cut(s) 571
BsmFI GGGAC 4 cut(s) 234, 497, 614, 850
BsnI GGCC 4 cut(s) 783, 1011, 1119, 1228
Bsp1286I GDGCHC 3 cut(s) 64, 947, 969
Bsp13I TCCGGA 1 cut(s) 760
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
Bsp1720I GCTNAGC 1 cut(s) 663
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 4 cut(s) 91, 456, 547, 1165
BspANI GGCC 4 cut(s) 783, 1011, 1119, 1228
BspCNI CTCAG 7 cut(s) 197, 362, 425, 434, 471, 655, 734
BspDI ATCGAT 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 760
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 3 cut(s) 272, 328, 339
BspMAI CTGCAG 1 cut(s) 916
BspMI ACCTGC 2 cut(s) 641, 905
BspPI GGATC 2 cut(s) 219, 220
BspTI CTTAAG 1 cut(s) 938
BsrDI GCAATG 1 cut(s) 858
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 1 cut(s) 1004
BssECI CCNNGG 4 cut(s) 174, 550, 1134, 1229
BssMI GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
BssNAI GTATAC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 174, 550
Bst1107I GTATAC 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 370, 1230
Bst4CI ACNGT 4 cut(s) 399, 565, 953, 1172
Bst6I CTCTTC 3 cut(s) 368, 666, 1209
BstAFI CTTAAG 1 cut(s) 938
BstAUI TGTACA 1 cut(s) 444
BstC8I GCNNGC 4 cut(s) 433, 660, 1086, 1236
BstDEI CTNAG 9 cut(s) 184, 293, 349, 412, 421, 479, 663, 721, 1041
BstDSI CCRYGG 1 cut(s) 174
BstENI CCTNNNNNAGG 1 cut(s) 912
BstF5I GGATG 5 cut(s) 214, 344, 611, 817, 1225
BstFNI CGCG 1 cut(s) 356
BstH2I RGCGCY 2 cut(s) 868, 878
BstHHI GCGC 4 cut(s) 285, 299, 867, 877
BstKTI GATC 7 cut(s) 69, 214, 228, 312, 380, 478, 1077
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
BstMWI GCNNNNNNNGC 4 cut(s) 362, 664, 862, 1067
BstNI CCWGG 2 cut(s) 370, 1230
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 217, 368, 1228
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 2 cut(s) 947, 969
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 6 cut(s) 377, 447, 513, 568, 1070, 1075
BstX2I RGATCY 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 377
BstZ17I GTATAC 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 321
BsuI GTATCC 2 cut(s) 757, 1202
BsuRI GGCC 4 cut(s) 783, 1011, 1119, 1228
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 5 cut(s) 214, 344, 611, 817, 1225
BtsIMutI CAGTG 4 cut(s) 395, 447, 561, 1011
BveI ACCTGC 2 cut(s) 641, 905
Cac8I GCNNGC 4 cut(s) 433, 660, 1086, 1236
CfoI GCGC 4 cut(s) 285, 299, 867, 877
Cfr13I GGNCC 2 cut(s) 1009, 1118
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 445, 728
CviQI GTAC 2 cut(s) 445, 728
DdeI CTNAG 9 cut(s) 184, 293, 349, 412, 421, 479, 663, 721, 1041
DpnI GATC 7 cut(s) 68, 213, 227, 311, 379, 477, 1076
DpnII GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
DraIII CACNNNGTG 2 cut(s) 399, 973
Eam1104I CTCTTC 3 cut(s) 368, 666, 1209
EarI CTCTTC 3 cut(s) 368, 666, 1209
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 174, 550
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 368, 1228
EcoT14I CCWWGG 2 cut(s) 174, 550
ErhI CCWWGG 2 cut(s) 174, 550
FaqI GGGAC 4 cut(s) 234, 497, 614, 850
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 6 cut(s) 366, 436, 502, 557, 1059, 1089
FokI GGATG 5 cut(s) 201, 331, 598, 824, 1232
Fsp4HI GCNGC 6 cut(s) 366, 436, 502, 557, 1059, 1089
FspAI RTGCGCAY 1 cut(s) 284
FspBI CTAG 2 cut(s) 230, 903
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 4 cut(s) 284, 298, 866, 876
GluI GCNGC 6 cut(s) 366, 436, 502, 557, 1059, 1089
GsuI CTGGAG 2 cut(s) 324, 855
HaeII RGCGCY 2 cut(s) 868, 878
HaeIII GGCC 4 cut(s) 783, 1011, 1119, 1228
HapII CCGG 2 cut(s) 218, 761
HgaI GACGC 1 cut(s) 362
HhaI GCGC 4 cut(s) 285, 299, 867, 877
Hin6I GCGC 4 cut(s) 283, 297, 865, 875
HinP1I GCGC 4 cut(s) 283, 297, 865, 875
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 6 cut(s) 76, 489, 506, 513, 713, 751
HpaII CCGG 2 cut(s) 218, 761
HphI GGTGA 3 cut(s) 85, 622, 1069
Hpy166II GTNNAC 7 cut(s) 195, 409, 418, 447, 755, 945, 976
Hpy188I TCNGA 8 cut(s) 59, 187, 211, 314, 352, 424, 480, 1149
Hpy188III TCNNGA 4 cut(s) 510, 541, 761, 827
Hpy8I GTNNAC 7 cut(s) 195, 409, 418, 447, 755, 945, 976
Hpy99I CGWCG 1 cut(s) 828
HpyAV CCTTC 3 cut(s) 638, 670, 918
HpyCH4III ACNGT 4 cut(s) 399, 565, 953, 1172
HpyCH4V TGCA 8 cut(s) 365, 464, 636, 691, 851, 856, 914, 945
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 664, 862, 1067
HpyF3I CTNAG 9 cut(s) 184, 293, 349, 412, 421, 479, 663, 721, 1041
HspAI GCGC 4 cut(s) 283, 297, 865, 875
Kpn2I TCCGGA 1 cut(s) 760
Kzo9I GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
LmnI GCTCC 3 cut(s) 270, 343, 1167
Lsp1109I GCAGC 6 cut(s) 377, 447, 513, 568, 1070, 1075
LweI GCATC 6 cut(s) 63, 353, 447, 620, 971, 1183
MaeI CTAG 2 cut(s) 230, 903
MaeIII GTNAC 2 cut(s) 73, 391
MalI GATC 7 cut(s) 68, 213, 227, 311, 379, 477, 1076
MboI GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
MboII GAAGA 3 cut(s) 385, 683, 1226
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 3 cut(s) 64, 947, 969
MluCI AATT 9 cut(s) 34, 42, 169, 256, 522, 534, 692, 786, 1152
MlyI GAGTC 4 cut(s) 70, 500, 707, 760
MmeI TCCRAC 2 cut(s) 817, 1137
MnlI CCTC 7 cut(s) 118, 358, 474, 725, 879, 1129, 1210
MroI TCCGGA 1 cut(s) 760
MseI TTAA 2 cut(s) 333, 939
MslI CAYNNNNRTG 4 cut(s) 21, 128, 584, 940
MspCI CTTAAG 1 cut(s) 938
MspI CCGG 2 cut(s) 218, 761
MspR9I CCNGG 3 cut(s) 219, 370, 1230
MvaI CCWGG 2 cut(s) 370, 1230
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 4 cut(s) 362, 664, 862, 1067
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 174
NdeII GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
NlaIV GGNNCC 3 cut(s) 272, 328, 339
NmeAIII GCCGAG 3 cut(s) 190, 797, 1096
NmuCI GTSAC 2 cut(s) 73, 391
NsbI TGCGCA 1 cut(s) 284
NspI RCATGY 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 2 cut(s) 489, 513
Pfl23II CGTACG 1 cut(s) 727
PflFI GACNNNGTC 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 6 cut(s) 367, 437, 503, 558, 1060, 1090
PleI GAGTC 4 cut(s) 70, 500, 707, 759
PpsI GAGTC 4 cut(s) 70, 500, 707, 759
Psp6I CCWGG 2 cut(s) 368, 1228
PspGI CCWGG 2 cut(s) 368, 1228
PspLI CGTACG 1 cut(s) 727
PspN4I GGNNCC 3 cut(s) 272, 328, 339
PspPI GGNCC 2 cut(s) 1009, 1118
PsrI GAACNNNNNNTAC 2 cut(s) 701, 733
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 389
RsaI GTAC 2 cut(s) 446, 729
RsaNI GTAC 2 cut(s) 445, 728
RseI CAYNNNNRTG 4 cut(s) 21, 128, 584, 940
SaqAI TTAA 2 cut(s) 333, 939
SatI GCNGC 6 cut(s) 366, 436, 502, 557, 1059, 1089
Sau3AI GATC 7 cut(s) 66, 211, 225, 309, 377, 475, 1074
Sau96I GGNCC 2 cut(s) 1009, 1118
SchI GAGTC 4 cut(s) 70, 500, 707, 760
ScrFI CCNGG 3 cut(s) 219, 370, 1230
SduI GDGCHC 3 cut(s) 64, 947, 969
SetI ASST 8 cut(s) 105, 151, 200, 561, 635, 649, 899, 919
SfaNI GCATC 6 cut(s) 63, 353, 447, 620, 971, 1183
SfcI CTRYAG 1 cut(s) 912
SmiMI CAYNNNNRTG 4 cut(s) 21, 128, 584, 940
SmlI CTYRAG 2 cut(s) 508, 938
SmoI CTYRAG 2 cut(s) 508, 938
Sse9I AATT 9 cut(s) 34, 42, 169, 256, 522, 534, 692, 786, 1152
SsiI CCGC 4 cut(s) 91, 456, 547, 1165
SspI AATATT 1 cut(s) 13
SspMI CTAG 2 cut(s) 230, 903
StyD4I CCNGG 3 cut(s) 217, 368, 1228
StyI CCWWGG 2 cut(s) 174, 550
TaaI ACNGT 4 cut(s) 399, 565, 953, 1172
TaqI TCGA 4 cut(s) 321, 526, 540, 737
TasI AATT 9 cut(s) 34, 42, 169, 256, 522, 534, 692, 786, 1152
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 489, 513
Tru1I TTAA 2 cut(s) 333, 939
Tru9I TTAA 2 cut(s) 333, 939
TscAI CASTG 4 cut(s) 402, 454, 568, 1011
TseFI GTSAC 2 cut(s) 73, 391
TseI GCWGC 6 cut(s) 365, 435, 501, 556, 1058, 1088
Tsp45I GTSAC 2 cut(s) 73, 391
TspDTI ATGAA 5 cut(s) 5, 39, 602, 767, 909
TspGWI ACGGA 2 cut(s) 264, 276
TspRI CASTG 4 cut(s) 402, 454, 568, 1011
Tth111I GACNNNGTC 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 938
VneI GTGCAC 1 cut(s) 943
XagI CCTNNNNNAGG 1 cut(s) 912
XapI RAATTY 2 cut(s) 169, 522
XceI RCATGY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 2 cut(s) 230, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.