FvH4_4g08192
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000106
Physical Location & Seq
Reverse (-)
7998895 .. 8001281
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08192.t1

Sequence Viewer

Length: 825 bp
ATGTCTGTTGCTGCATACTACACAAAGCTCAAAGGATTATGGGATGAACTTGCGTCCTACACTCCTTCGGTGACCTGCACCTGTGGAAATCAGAATGATCGCACCAAACTAATGCAATTTCTCATGGGCTTAAACGAGTCCTATTCCGGTACACGCGGTCAGATTTTGTTGATGAATCCATTACCATCTGTTCGTCAGGCATATGCTTCTGTTGTGCAAGAGGAAAAGCAACGTGAATTGGCATCCAATGTTGTTGTTCCCCCCGACACAGCAGCCATGGTTGTCCGTGTTAGAAATAACAACACGTTCAGAGTGAGGCAAAACAATCAGATTTTTCAAGGCAGCAATTCTCGAAATCAAGAACCGTTCGAGTGCACTTATTGTGGTGGCAAATTTCACAGAGAGGCAACATGTTGGAAAAAGAATGGTTATCCACCAGGCCACCCCAAACACAAGTCTTCTAAACAGCGACAAGATTACCCGCAGCAAACTTCCTCATCCTTACAGCAAAATTCCCCATCCCCGCAACAACATCCCTCACAGTCAACTTCCCCGCAGCAAAATTCCTCATCCTCGCAGCTAGCCCCAGACATCATTGCTCCTTCGTCACCTAATTCTGCTCATCCCAGCGGCGTTCCACCTAGCGGTGCCGAACCACTGGCCACCGGTTCAACCACTCTCGAACAACCACTTCTAGAAACCAATCTTCCTGCTTCTCCTAATCCAACCGCCCTTGAACTTCCTAATCAACCCGAATCGGCTCTTCCTCTTGATCCTGAACCTGTTCTTCGCCGATCCCAGCGTCACAAGGCACCCAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

275

Amino Acids

30.06

Weight (kDa)

8.97

Isoelectric Point (pI)

72.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 2 cut(s) 647, 811
AccII CGCG 1 cut(s) 156
AciI CCGC 7 cut(s) 156, 482, 524, 554, 630, 645, 729
AclWI GGATC 2 cut(s) 767, 789
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 3 cut(s) 392, 511, 562
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 644
AflIII ACRYGT 2 cut(s) 303, 410
AgeI ACCGGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 338, 672, 737
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 2 cut(s) 28, 580
AluI AGCT 2 cut(s) 28, 580
Alw21I GWGCWC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 373
AlwI GGATC 2 cut(s) 767, 789
AoxI GGCC 2 cut(s) 439, 660
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 6 cut(s) 11, 272, 342, 484, 556, 577
ApoI RAATTY 3 cut(s) 392, 511, 562
AsiGI ACCGGT 1 cut(s) 665
Asp700I GAANNNNTTC 1 cut(s) 783
AsuHPI GGTGA 2 cut(s) 82, 600
AsuNHI GCTAGC 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 2 cut(s) 647, 811
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 5 cut(s) 284, 354, 496, 568, 589
BccI CCATC 2 cut(s) 193, 526
BciT130I CCWGG 1 cut(s) 438
BfaI CTAG 3 cut(s) 581, 642, 695
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 7 cut(s) 12, 273, 343, 485, 557, 578, 631
BlsI GCNGC 7 cut(s) 13, 274, 344, 486, 558, 579, 632
Bme1390I CCNGG 1 cut(s) 438
BmiI GGNNCC 2 cut(s) 649, 813
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 251
BmtI GCTAGC 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 2 cut(s) 146, 665
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 7 cut(s) 49, 242, 497, 518, 532, 569, 622
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMI GCAATG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 663
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 5 cut(s) 284, 354, 496, 568, 589
BseYI CCCAGC 2 cut(s) 626, 798
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 441, 662
BshNI GGYRCC 2 cut(s) 647, 811
BshTI ACCGGT 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 2 cut(s) 147, 666
BslI CCNNNNNNNGG 1 cut(s) 644
BsnI GGCC 2 cut(s) 441, 662
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 97, 772, 794
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 7 cut(s) 156, 482, 524, 554, 630, 645, 729
BspANI GGCC 2 cut(s) 441, 662
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 649, 813
BspMI ACCTGC 1 cut(s) 83
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 2 cut(s) 767, 789
BspQI GCTCTTC 1 cut(s) 768
BspT107I GGYRCC 2 cut(s) 647, 811
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 665
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 3 cut(s) 97, 772, 794
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 366, 543
Bst6I CTCTTC 1 cut(s) 768
BstC8I GCNNGC 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 276
BstEII GGTNACC 1 cut(s) 70
BstF5I GGATG 7 cut(s) 49, 242, 497, 518, 532, 569, 622
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 3 cut(s) 100, 775, 797
BstMBI GATC 3 cut(s) 97, 772, 794
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 414
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 5 cut(s) 284, 354, 496, 568, 589
BstV2I GAAGAC 1 cut(s) 450
BsuRI GGCC 2 cut(s) 441, 662
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 7 cut(s) 49, 242, 497, 518, 532, 569, 622
BtsIMutI CAGTG 1 cut(s) 656
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 665
CseI GACGC 2 cut(s) 42, 791
Csp6I GTAC 1 cut(s) 150
CspAI ACCGGT 1 cut(s) 665
CviAII CATG 3 cut(s) 124, 277, 411
CviJI RGCY 8 cut(s) 28, 129, 275, 441, 580, 584, 662, 761
CviKI_1 RGCY 8 cut(s) 28, 129, 275, 441, 580, 584, 662, 761
CviQI GTAC 1 cut(s) 150
DpnI GATC 3 cut(s) 99, 774, 796
DpnII GATC 3 cut(s) 97, 772, 794
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 127, 280, 414
FaiI YATR 7 cut(s) 16, 40, 125, 202, 204, 278, 412
FatI CATG 3 cut(s) 123, 276, 410
FauI CCCGC 3 cut(s) 489, 531, 561
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 7 cut(s) 12, 273, 343, 485, 557, 578, 631
FokI GGATG 7 cut(s) 56, 229, 484, 505, 519, 556, 609
Fsp4HI GCNGC 7 cut(s) 12, 273, 343, 485, 557, 578, 631
FspBI CTAG 3 cut(s) 581, 642, 695
GluI GCNGC 7 cut(s) 12, 273, 343, 485, 557, 578, 631
GsaI CCCAGC 2 cut(s) 630, 802
HaeIII GGCC 2 cut(s) 441, 662
HapII CCGG 2 cut(s) 147, 666
HgaI GACGC 2 cut(s) 42, 791
Hin1II CATG 3 cut(s) 127, 280, 414
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HinfI GANTC 3 cut(s) 137, 175, 755
HpaII CCGG 2 cut(s) 147, 666
HphI GGTGA 2 cut(s) 82, 600
Hpy166II GTNNAC 3 cut(s) 152, 375, 546
Hpy188I TCNGA 4 cut(s) 93, 162, 311, 330
Hpy188III TCNNGA 6 cut(s) 351, 359, 680, 695, 770, 776
Hpy8I GTNNAC 3 cut(s) 152, 375, 546
HpyAV CCTTC 2 cut(s) 75, 612
HpyCH4III ACNGT 2 cut(s) 366, 543
HpyCH4IV ACGT 2 cut(s) 232, 305
HpyCH4V TGCA 5 cut(s) 14, 78, 115, 217, 375
HpySE526I ACGT 2 cut(s) 232, 305
Hsp92II CATG 3 cut(s) 127, 280, 414
Kzo9I GATC 3 cut(s) 97, 772, 794
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 5 cut(s) 284, 354, 496, 568, 589
LweI GCATC 1 cut(s) 251
MaeI CTAG 3 cut(s) 581, 642, 695
MaeII ACGT 2 cut(s) 232, 305
MaeIII GTNAC 3 cut(s) 70, 606, 803
MalI GATC 3 cut(s) 99, 774, 796
MboI GATC 3 cut(s) 97, 772, 794
MboII GAAGA 4 cut(s) 450, 698, 755, 779
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 7 cut(s) 116, 236, 346, 392, 511, 562, 613
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 395, 749
MnlI CCTC 8 cut(s) 214, 309, 397, 505, 547, 577, 583, 777
Mox20I TGGCCA 1 cut(s) 662
MroXI GAANNNNTTC 1 cut(s) 783
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 2 cut(s) 147, 666
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 202
NdeII GATC 3 cut(s) 97, 772, 794
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 3 cut(s) 127, 280, 414
NlaIV GGNNCC 2 cut(s) 649, 813
NmuCI GTSAC 3 cut(s) 70, 606, 803
NspI RCATGY 1 cut(s) 414
PciI ACATGT 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 175, 755
PinAI ACCGGT 1 cut(s) 665
PkrI GCNGC 7 cut(s) 13, 274, 344, 486, 558, 579, 632
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PscI ACATGT 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 436
PspEI GGTNACC 1 cut(s) 70
PspFI CCCAGC 2 cut(s) 626, 798
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 649, 813
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 7 cut(s) 12, 273, 343, 485, 557, 578, 631
Sau3AI GATC 3 cut(s) 97, 772, 794
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 377
SetI ASST 9 cut(s) 30, 77, 83, 235, 308, 582, 613, 643, 784
SfaNI GCATC 1 cut(s) 251
Sse9I AATT 7 cut(s) 116, 236, 346, 392, 511, 562, 613
SsiI CCGC 7 cut(s) 156, 482, 524, 554, 630, 645, 729
SspMI CTAG 3 cut(s) 581, 642, 695
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 366, 543
TaiI ACGT 2 cut(s) 235, 308
TaqI TCGA 3 cut(s) 352, 369, 681
TasI AATT 7 cut(s) 116, 236, 346, 392, 511, 562, 613
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 2 cut(s) 175, 755
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 3 cut(s) 70, 606, 803
TseI GCWGC 6 cut(s) 11, 272, 342, 484, 556, 577
Tsp45I GTSAC 3 cut(s) 70, 606, 803
TspDTI ATGAA 2 cut(s) 60, 188
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 663
VneI GTGCAC 1 cut(s) 373
XapI RAATTY 3 cut(s) 392, 511, 562
XbaI TCTAGA 1 cut(s) 694
XceI RCATGY 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 3 cut(s) 581, 642, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.