pentatricopeptide repeat-containing protein At5g04810
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 23 - 130 | 4e-38 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 155 |
| AccB1I | GGYRCC | 1 cut(s) | 155 |
| AccI | GTMKAC | 2 cut(s) | 631, 653 |
| AcsI | RAATTY | 1 cut(s) | 300 |
| AfaI | GTAC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 76 |
| AgeI | ACCGGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 4 cut(s) | 53, 133, 145, 686 |
| AjnI | CCWGG | 1 cut(s) | 97 |
| AluBI | AGCT | 3 cut(s) | 176, 449, 485 |
| AluI | AGCT | 3 cut(s) | 176, 449, 485 |
| AoxI | GGCC | 1 cut(s) | 431 |
| ApoI | RAATTY | 1 cut(s) | 300 |
| AsiGI | ACCGGT | 1 cut(s) | 238 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 574 |
| Asp718I | GGTACC | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 3 cut(s) | 228, 296, 350 |
| BanI | GGYRCC | 1 cut(s) | 155 |
| BbsI | GAAGAC | 1 cut(s) | 326 |
| BccI | CCATC | 1 cut(s) | 146 |
| BciT130I | CCWGG | 1 cut(s) | 99 |
| BfaI | CTAG | 3 cut(s) | 182, 486, 636 |
| Bme1390I | CCNGG | 1 cut(s) | 99 |
| BmiI | GGNNCC | 1 cut(s) | 157 |
| BmrFI | CCNGG | 1 cut(s) | 99 |
| BmsI | GCATC | 3 cut(s) | 4, 255, 290 |
| BpiI | GAAGAC | 1 cut(s) | 326 |
| Bpu10I | CCTNAGC | 1 cut(s) | 435 |
| Bsa29I | ATCGAT | 1 cut(s) | 39 |
| BsaWI | WCCGGW | 2 cut(s) | 238, 370 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 76 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| BseBI | CCWGG | 1 cut(s) | 99 |
| BseCI | ATCGAT | 1 cut(s) | 39 |
| BseGI | GGATG | 2 cut(s) | 270, 319 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 433 |
| BshNI | GGYRCC | 1 cut(s) | 155 |
| BshTI | ACCGGT | 1 cut(s) | 238 |
| BshVI | ATCGAT | 1 cut(s) | 39 |
| BsiSI | CCGG | 2 cut(s) | 239, 371 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 433 |
| BspANI | GGCC | 1 cut(s) | 433 |
| BspDI | ATCGAT | 1 cut(s) | 39 |
| BspLI | GGNNCC | 1 cut(s) | 157 |
| BspT107I | GGYRCC | 1 cut(s) | 155 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssNAI | GTATAC | 2 cut(s) | 632, 654 |
| Bst1107I | GTATAC | 2 cut(s) | 632, 654 |
| Bst2UI | CCWGG | 1 cut(s) | 99 |
| BstDEI | CTNAG | 2 cut(s) | 412, 435 |
| BstF5I | GGATG | 2 cut(s) | 270, 319 |
| BstNI | CCWGG | 1 cut(s) | 99 |
| BstNSI | RCATGY | 1 cut(s) | 475 |
| BstSCI | CCNGG | 1 cut(s) | 97 |
| BstV2I | GAAGAC | 1 cut(s) | 326 |
| BstZ17I | GTATAC | 2 cut(s) | 632, 654 |
| Bsu15I | ATCGAT | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 433 |
| BsuTUI | ATCGAT | 1 cut(s) | 39 |
| BtsCI | GGATG | 2 cut(s) | 270, 319 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| ClaI | ATCGAT | 1 cut(s) | 39 |
| Csp6I | GTAC | 1 cut(s) | 156 |
| CspAI | ACCGGT | 1 cut(s) | 238 |
| CviAII | CATG | 1 cut(s) | 472 |
| CviJI | RGCY | 8 cut(s) | 176, 400, 433, 439, 449, 485, 498, 679 |
| CviKI_1 | RGCY | 8 cut(s) | 176, 400, 433, 439, 449, 485, 498, 679 |
| CviQI | GTAC | 1 cut(s) | 156 |
| DdeI | CTNAG | 2 cut(s) | 412, 435 |
| DraI | TTTAAA | 2 cut(s) | 333, 675 |
| Eco32I | GATATC | 1 cut(s) | 197 |
| EcoRII | CCWGG | 1 cut(s) | 97 |
| EcoRV | GATATC | 1 cut(s) | 197 |
| FaeI | CATG | 1 cut(s) | 475 |
| FatI | CATG | 1 cut(s) | 471 |
| FblI | GTMKAC | 2 cut(s) | 631, 653 |
| FokI | GGATG | 2 cut(s) | 277, 326 |
| FspBI | CTAG | 3 cut(s) | 182, 486, 636 |
| HaeIII | GGCC | 1 cut(s) | 433 |
| HapII | CCGG | 2 cut(s) | 239, 371 |
| Hin1II | CATG | 1 cut(s) | 475 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HinfI | GANTC | 1 cut(s) | 53 |
| HpaII | CCGG | 2 cut(s) | 239, 371 |
| HphI | GGTGA | 3 cut(s) | 228, 296, 350 |
| Hpy166II | GTNNAC | 3 cut(s) | 88, 632, 654 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 296 |
| Hpy8I | GTNNAC | 3 cut(s) | 88, 632, 654 |
| HpyAV | CCTTC | 3 cut(s) | 22, 203, 368 |
| HpyCH4IV | ACGT | 1 cut(s) | 532 |
| HpyCH4V | TGCA | 9 cut(s) | 64, 188, 275, 281, 326, 405, 456, 471, 611 |
| HpyF3I | CTNAG | 2 cut(s) | 412, 435 |
| HpySE526I | ACGT | 1 cut(s) | 532 |
| Hsp92II | CATG | 1 cut(s) | 475 |
| KpnI | GGTACC | 1 cut(s) | 159 |
| LmnI | GCTCC | 1 cut(s) | 22 |
| LpnPI | CCDG | 7 cut(s) | 24, 84, 111, 162, 252, 281, 384 |
| LweI | GCATC | 3 cut(s) | 4, 255, 290 |
| MaeI | CTAG | 3 cut(s) | 182, 486, 636 |
| MaeII | ACGT | 1 cut(s) | 532 |
| MaeIII | GTNAC | 2 cut(s) | 241, 464 |
| MboII | GAAGA | 3 cut(s) | 331, 362, 399 |
| MfeI | CAATTG | 2 cut(s) | 111, 276 |
| MmeI | TCCRAC | 1 cut(s) | 195 |
| MnlI | CCTC | 4 cut(s) | 105, 450, 513, 627 |
| MroXI | GAANNNNTTC | 1 cut(s) | 574 |
| MseI | TTAA | 3 cut(s) | 332, 591, 674 |
| MspI | CCGG | 2 cut(s) | 239, 371 |
| MspR9I | CCNGG | 1 cut(s) | 99 |
| MunI | CAATTG | 2 cut(s) | 111, 276 |
| MvaI | CCWGG | 1 cut(s) | 99 |
| NlaIII | CATG | 1 cut(s) | 475 |
| NlaIV | GGNNCC | 1 cut(s) | 157 |
| NmuCI | GTSAC | 2 cut(s) | 241, 464 |
| NspI | RCATGY | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 574 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| PinAI | ACCGGT | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 97 |
| PspGI | CCWGG | 1 cut(s) | 97 |
| PspN4I | GGNNCC | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 157 |
| RsaNI | GTAC | 1 cut(s) | 156 |
| SaqAI | TTAA | 3 cut(s) | 332, 591, 674 |
| ScrFI | CCNGG | 1 cut(s) | 99 |
| SetI | ASST | 7 cut(s) | 97, 178, 451, 487, 535, 631, 637 |
| SfaNI | GCATC | 3 cut(s) | 4, 255, 290 |
| SspI | AATATT | 1 cut(s) | 607 |
| SspMI | CTAG | 3 cut(s) | 182, 486, 636 |
| StyD4I | CCNGG | 1 cut(s) | 97 |
| TaiI | ACGT | 1 cut(s) | 535 |
| TaqI | TCGA | 2 cut(s) | 39, 518 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 3 cut(s) | 332, 591, 674 |
| Tru9I | TTAA | 3 cut(s) | 332, 591, 674 |
| TseFI | GTSAC | 2 cut(s) | 241, 464 |
| Tsp45I | GTSAC | 2 cut(s) | 241, 464 |
| TspDTI | ATGAA | 1 cut(s) | 363 |
| XapI | RAATTY | 1 cut(s) | 300 |
| XceI | RCATGY | 1 cut(s) | 475 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 506 |
| XmiI | GTMKAC | 2 cut(s) | 631, 653 |
| XmnI | GAANNNNTTC | 1 cut(s) | 574 |
| XspI | CTAG | 3 cut(s) | 182, 486, 636 |