RLG00000000429

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000106
Physical Location & Seq
Forward (+)
939237 .. 940449
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000429

Sequence Viewer

Length: 780 bp
ATGGTGATAGAACATGATGAATTTCCGGTGCGGTTATGGCATAGAAGATTGGGTCACATGAGTGAAAAAGGTATGGGGATCTTGATGAAAAGGGAACTTATTCCCAAGATGTGCTTTGGTGACAAGGAATTTTGTGAGCATTGTGTATATGGGAAGCATCATAAGCGAAGCTTCAAGGCCGGGAGTCACACTAGTAAAGGCATACTTGACTACATTCACTCGGATTTATGGGGCCCGTCTCGCACTAAATCATGTGGAGGTGCATCATACTTCATATCTTTCATTGATGATTACTCAAGGAAAGTGTGGGTAAAATTCTTGAAGTCAAAGGATGAAGCTTTCATGGCATTCAAGCATTTCAAGACCGAGGTGGAGAAAGAAAGCGGAAGGTGCATCAAGGTGATTAGAACCGATAATGGCTTGGAATTTGTAAACAAAGTCTTTCTCAAATATTGCAAGGATGAAGGAATTGTCATGCATAATACCATTGTTCGGAGCCCTCAACAAAATGGGGTGGCGGAGCGCATGAATAGAACTTTGGTGGAACGTACAAGGTGTATGTTGAGCAATGCGGGTGTTGGTAAAGAGCTTTGGGCGGAAGCCATCAACACGGCTTGTTATCTTGTGAATAGGTCACCTTCGGCGGCATTGGGAGAGAAAAGACCTCAAGAGGGTTGGTACCAGAAGAGGTTGTTATTGGGCTGGCCTAAAGGCAAGAACAGTTCCAGGTGGTCCAGTGGATTAAGCCCTTGTCAAGGACGGCACGCAGAAGGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

260

Amino Acids

29.77

Weight (kDa)

9.56

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 9 - 53 1.7e-15 GAG-pre-integrase domain
rve PF00665 72 - 167 1.3e-11 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 678
AccB1I GGYRCC 1 cut(s) 678
AciI CCGC 6 cut(s) 31, 384, 518, 572, 596, 644
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 4 cut(s) 20, 128, 314, 425
AfaI GTAC 2 cut(s) 550, 680
AfiI CCNNNNNNNGG 3 cut(s) 492, 671, 755
AgsI TTSAA 4 cut(s) 175, 322, 352, 361
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 725
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AleI CACNNNNGTG 1 cut(s) 60
AluBI AGCT 3 cut(s) 171, 338, 589
AluI AGCT 3 cut(s) 171, 338, 589
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 86
AoxI GGCC 3 cut(s) 177, 232, 704
ApaI GGGCCC 1 cut(s) 236
ApoI RAATTY 4 cut(s) 20, 128, 314, 425
Asp700I GAANNNNTTC 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 3 cut(s) 232, 233, 732
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 4 cut(s) 16, 131, 412, 627
AvaII GGWCC 1 cut(s) 732
BaeGI GKGCMC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 678
BanII GRGCYC 2 cut(s) 236, 500
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 627, 776
BciT130I CCWGG 1 cut(s) 727
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 243
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
Bme1390I CCNGG 2 cut(s) 181, 727
Bme18I GGWCC 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 232, 233, 732
BmiI GGNNCC 4 cut(s) 233, 234, 497, 680
BmrFI CCNGG 2 cut(s) 181, 727
BmsI GCATC 3 cut(s) 166, 272, 402
BpuEI CTTGAG 2 cut(s) 280, 651
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 3 cut(s) 492, 671, 755
Bse1I ACTGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 574
BseBI CCWGG 1 cut(s) 727
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 337, 466
BseLI CCNNNNNNNGG 3 cut(s) 492, 671, 755
BseMI GCAATG 1 cut(s) 574
BseNI ACTGG 1 cut(s) 735
BseSI GKGCMC 1 cut(s) 236
BshFI GGCC 3 cut(s) 179, 234, 706
BshNI GGYRCC 1 cut(s) 678
BsiSI CCGG 2 cut(s) 26, 180
BslI CCNNNNNNNGG 3 cut(s) 492, 671, 755
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 179, 234, 706
Bsp120I GGGCCC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 236, 500
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 6 cut(s) 31, 384, 518, 572, 596, 644
BspANI GGCC 3 cut(s) 179, 234, 706
BspLI GGNNCC 4 cut(s) 233, 234, 497, 680
BspPI GGATC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 678
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 1 cut(s) 735
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 1 cut(s) 722
Bst6I CTCTTC 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 704, 765
BstEII GGTNACC 1 cut(s) 633
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 337, 466
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 5 cut(s) 37, 163, 240, 344, 390
BstNI CCWGG 1 cut(s) 727
BstPI GGTNACC 1 cut(s) 633
BstSCI CCNGG 2 cut(s) 179, 725
BstSLI GKGCMC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 3 cut(s) 179, 234, 706
BtsCI GGATG 2 cut(s) 337, 466
BtsIMutI CAGTG 1 cut(s) 742
Cac8I GCNNGC 2 cut(s) 704, 765
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 3 cut(s) 232, 233, 732
Csp6I GTAC 2 cut(s) 549, 679
CviAII CATG 6 cut(s) 14, 58, 252, 343, 475, 526
CviQI GTAC 2 cut(s) 549, 679
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
EciI GGCGGA 2 cut(s) 533, 611
Eco24I GRGCYC 2 cut(s) 236, 500
Eco47I GGWCC 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 633
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 2 cut(s) 236, 500
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 6 cut(s) 17, 61, 255, 346, 478, 529
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 155, 187, 189, 221
FatI CATG 6 cut(s) 13, 57, 251, 342, 474, 525
FauI CCCGC 1 cut(s) 565
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 2 cut(s) 344, 473
FriOI GRGCYC 2 cut(s) 236, 500
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 524
GluI GCNGC 1 cut(s) 645
HaeIII GGCC 3 cut(s) 179, 234, 706
HapII CCGG 2 cut(s) 26, 180
HhaI GCGC 1 cut(s) 525
Hin1II CATG 6 cut(s) 17, 61, 255, 346, 478, 529
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HindIII AAGCTT 2 cut(s) 169, 336
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 26, 180
HphI GGTGA 4 cut(s) 16, 131, 412, 627
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 2 cut(s) 223, 495
Hpy188III TCNNGA 4 cut(s) 82, 319, 361, 668
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 4 cut(s) 381, 458, 648, 764
HpyCH4III ACNGT 1 cut(s) 722
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 4 cut(s) 263, 393, 456, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 163, 240, 344, 390
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 6 cut(s) 17, 61, 255, 346, 478, 529
HspAI GCGC 1 cut(s) 523
KpnI GGTACC 1 cut(s) 682
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 495, 520
LpnPI CCDG 7 cut(s) 39, 193, 688, 695, 712, 739, 748
LweI GCATC 3 cut(s) 166, 272, 402
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 4 cut(s) 53, 119, 185, 633
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 57, 697
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 236, 500
MluCI AATT 5 cut(s) 20, 128, 314, 425, 468
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 6 cut(s) 251, 361, 510, 664, 675, 681
Mph1103I ATGCAT 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 2 cut(s) 60, 398
MspI CCGG 2 cut(s) 26, 180
MspR9I CCNGG 2 cut(s) 181, 727
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 1 cut(s) 727
MwoI GCNNNNNNNGC 5 cut(s) 37, 163, 240, 344, 390
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 78
NlaIII CATG 6 cut(s) 17, 61, 255, 346, 478, 529
NlaIV GGNNCC 4 cut(s) 233, 234, 497, 680
NmuCI GTSAC 4 cut(s) 53, 119, 185, 633
NsiI ATGCAT 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 60
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 646
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 725
PspEI GGTNACC 1 cut(s) 633
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 4 cut(s) 233, 234, 497, 680
PspOMI GGGCCC 1 cut(s) 232
PspPI GGNCC 3 cut(s) 232, 233, 732
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 2 cut(s) 550, 680
RsaNI GTAC 2 cut(s) 549, 679
RseI CAYNNNNRTG 2 cut(s) 60, 398
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 3 cut(s) 232, 233, 732
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 181, 727
SduI GDGCHC 2 cut(s) 236, 500
SfaNI GCATC 3 cut(s) 166, 272, 402
SinI GGWCC 1 cut(s) 732
SmiMI CAYNNNNRTG 2 cut(s) 60, 398
SmlI CTYRAG 2 cut(s) 295, 666
SmoI CTYRAG 2 cut(s) 295, 666
SpeI ACTAGT 1 cut(s) 191
Sse9I AATT 5 cut(s) 20, 128, 314, 425, 468
SsiI CCGC 6 cut(s) 31, 384, 518, 572, 596, 644
SspI AATATT 1 cut(s) 452
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 179, 725
TaaI ACNGT 1 cut(s) 722
TaiI ACGT 1 cut(s) 550
TaqII GACCGA 1 cut(s) 380
TasI AATT 5 cut(s) 20, 128, 314, 425, 468
TauI GCSGC 1 cut(s) 647
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 4 cut(s) 53, 119, 185, 633
Tsp45I GTSAC 4 cut(s) 53, 119, 185, 633
TspDTI ATGAA 8 cut(s) 33, 101, 262, 271, 331, 348, 477, 542
TspRI CASTG 1 cut(s) 742
VpaK11BI GGWCC 1 cut(s) 732
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 4 cut(s) 20, 128, 314, 425
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.