gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 146 |
| AciI | CCGC | 2 cut(s) | 146, 812 |
| AclWI | GGATC | 2 cut(s) | 250, 1031 |
| AcsI | RAATTY | 2 cut(s) | 847, 1072 |
| AcuI | CTGAAG | 1 cut(s) | 47 |
| AfaI | GTAC | 2 cut(s) | 406, 595 |
| AflII | CTTAAG | 2 cut(s) | 356, 1085 |
| AgsI | TTSAA | 9 cut(s) | 124, 158, 338, 522, 531, 668, 846, 875, 1079 |
| AleI | CACNNNNGTG | 3 cut(s) | 561, 758, 897 |
| AluBI | AGCT | 4 cut(s) | 56, 375, 868, 1027 |
| AluI | AGCT | 4 cut(s) | 56, 375, 868, 1027 |
| Alw21I | GWGCWC | 1 cut(s) | 377 |
| Alw26I | GTCTC | 2 cut(s) | 85, 302 |
| AlwI | GGATC | 2 cut(s) | 250, 1031 |
| ApoI | RAATTY | 2 cut(s) | 847, 1072 |
| AsuHPI | GGTGA | 4 cut(s) | 233, 575, 878, 911 |
| BanII | GRGCYC | 1 cut(s) | 377 |
| BbsI | GAAGAC | 2 cut(s) | 35, 1063 |
| Bbv12I | GWGCWC | 1 cut(s) | 377 |
| BccI | CCATC | 4 cut(s) | 340, 406, 760, 940 |
| BcoDI | GTCTC | 2 cut(s) | 85, 302 |
| BfaI | CTAG | 3 cut(s) | 183, 312, 402 |
| BfrI | CTTAAG | 2 cut(s) | 356, 1085 |
| BglII | AGATCT | 2 cut(s) | 90, 915 |
| BlpI | GCTNAGC | 1 cut(s) | 854 |
| BmcAI | AGTACT | 1 cut(s) | 406 |
| BmsI | GCATC | 5 cut(s) | 37, 274, 759, 1060, 1105 |
| BpiI | GAAGAC | 2 cut(s) | 35, 1063 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 854 |
| BsaJI | CCNNGG | 1 cut(s) | 1040 |
| Bse1I | ACTGG | 2 cut(s) | 449, 484 |
| Bse3DI | GCAATG | 1 cut(s) | 687 |
| BseDI | CCNNGG | 1 cut(s) | 1040 |
| BseGI | GGATG | 1 cut(s) | 1039 |
| BseMI | GCAATG | 1 cut(s) | 687 |
| BseMII | CTCAG | 4 cut(s) | 26, 90, 96, 144 |
| BseNI | ACTGG | 2 cut(s) | 449, 484 |
| BsiHKAI | GWGCWC | 1 cut(s) | 377 |
| BslFI | GGGAC | 1 cut(s) | 364 |
| BsmAI | GTCTC | 2 cut(s) | 85, 302 |
| BsmFI | GGGAC | 1 cut(s) | 364 |
| Bsp1286I | GDGCHC | 1 cut(s) | 377 |
| Bsp1407I | TGTACA | 1 cut(s) | 593 |
| Bsp143I | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 854 |
| BspACI | CCGC | 2 cut(s) | 146, 812 |
| BspCNI | CTCAG | 4 cut(s) | 25, 89, 95, 143 |
| BspPI | GGATC | 2 cut(s) | 250, 1031 |
| BspTI | CTTAAG | 2 cut(s) | 356, 1085 |
| BsrBI | CCGCTC | 1 cut(s) | 146 |
| BsrDI | GCAATG | 1 cut(s) | 687 |
| BsrGI | TGTACA | 1 cut(s) | 593 |
| BsrI | ACTGG | 2 cut(s) | 449, 484 |
| BssECI | CCNNGG | 1 cut(s) | 1040 |
| BssMI | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| BssT1I | CCWWGG | 1 cut(s) | 1040 |
| Bst4CI | ACNGT | 1 cut(s) | 675 |
| Bst6I | CTCTTC | 2 cut(s) | 233, 959 |
| BstAFI | CTTAAG | 2 cut(s) | 356, 1085 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 809 |
| BstAUI | TGTACA | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 1 cut(s) | 694 |
| BstDEI | CTNAG | 7 cut(s) | 12, 59, 76, 82, 130, 854, 1061 |
| BstF5I | GGATG | 1 cut(s) | 1039 |
| BstKTI | GATC | 4 cut(s) | 93, 258, 918, 1039 |
| BstMAI | GTCTC | 2 cut(s) | 85, 302 |
| BstMBI | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 809 |
| BstNSI | RCATGY | 1 cut(s) | 696 |
| BstV2I | GAAGAC | 2 cut(s) | 35, 1063 |
| BstX2I | RGATCY | 3 cut(s) | 90, 255, 915 |
| BstYI | RGATCY | 3 cut(s) | 90, 255, 915 |
| BtsCI | GGATG | 1 cut(s) | 1039 |
| BtsIMutI | CAGTG | 1 cut(s) | 680 |
| Cac8I | GCNNGC | 1 cut(s) | 694 |
| Csp6I | GTAC | 2 cut(s) | 405, 594 |
| CviAII | CATG | 2 cut(s) | 617, 693 |
| CviJI | RGCY | 9 cut(s) | 25, 56, 129, 362, 375, 397, 868, 1027, 1045 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 56, 129, 362, 375, 397, 868, 1027, 1045 |
| CviQI | GTAC | 2 cut(s) | 405, 594 |
| DdeI | CTNAG | 7 cut(s) | 12, 59, 76, 82, 130, 854, 1061 |
| DpnI | GATC | 4 cut(s) | 92, 257, 917, 1038 |
| DpnII | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| DraI | TTTAAA | 2 cut(s) | 577, 1071 |
| Eam1104I | CTCTTC | 2 cut(s) | 233, 959 |
| EarI | CTCTTC | 2 cut(s) | 233, 959 |
| Ecl136II | GAGCTC | 1 cut(s) | 375 |
| Eco130I | CCWWGG | 1 cut(s) | 1040 |
| Eco24I | GRGCYC | 1 cut(s) | 377 |
| Eco53kI | GAGCTC | 1 cut(s) | 375 |
| Eco57I | CTGAAG | 1 cut(s) | 47 |
| EcoICRI | GAGCTC | 1 cut(s) | 375 |
| EcoT14I | CCWWGG | 1 cut(s) | 1040 |
| EcoT38I | GRGCYC | 1 cut(s) | 377 |
| ErhI | CCWWGG | 1 cut(s) | 1040 |
| FaeI | CATG | 2 cut(s) | 620, 696 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 967, 999 |
| FaqI | GGGAC | 1 cut(s) | 364 |
| FatI | CATG | 2 cut(s) | 616, 692 |
| FauNDI | CATATG | 1 cut(s) | 705 |
| FokI | GGATG | 1 cut(s) | 1046 |
| FriOI | GRGCYC | 1 cut(s) | 377 |
| FspBI | CTAG | 3 cut(s) | 183, 312, 402 |
| Hin1II | CATG | 2 cut(s) | 620, 696 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HinfI | GANTC | 5 cut(s) | 102, 224, 265, 842, 988 |
| HphI | GGTGA | 4 cut(s) | 233, 575, 878, 911 |
| Hpy166II | GTNNAC | 2 cut(s) | 594, 787 |
| Hpy188I | TCNGA | 6 cut(s) | 15, 85, 133, 384, 415, 481 |
| Hpy188III | TCNNGA | 5 cut(s) | 250, 338, 622, 839, 922 |
| Hpy8I | GTNNAC | 2 cut(s) | 594, 787 |
| HpyAV | CCTTC | 3 cut(s) | 464, 500, 619 |
| HpyCH4III | ACNGT | 1 cut(s) | 675 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 809 |
| HpyF3I | CTNAG | 7 cut(s) | 12, 59, 76, 82, 130, 854, 1061 |
| Hsp92II | CATG | 2 cut(s) | 620, 696 |
| Kzo9I | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| LpnPI | CCDG | 6 cut(s) | 263, 290, 430, 497, 592, 1033 |
| LweI | GCATC | 5 cut(s) | 37, 274, 759, 1060, 1105 |
| MaeI | CTAG | 3 cut(s) | 183, 312, 402 |
| MaeIII | GTNAC | 3 cut(s) | 602, 632, 899 |
| MalI | GATC | 4 cut(s) | 92, 257, 917, 1038 |
| MbiI | CCGCTC | 1 cut(s) | 146 |
| MboI | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| MflI | RGATCY | 3 cut(s) | 90, 255, 915 |
| MhlI | GDGCHC | 1 cut(s) | 377 |
| MluCI | AATT | 5 cut(s) | 17, 409, 598, 847, 1072 |
| MlyI | GAGTC | 3 cut(s) | 233, 274, 982 |
| MnlI | CCTC | 2 cut(s) | 920, 960 |
| MseI | TTAA | 5 cut(s) | 150, 357, 576, 1070, 1086 |
| MslI | CAYNNNNRTG | 4 cut(s) | 561, 758, 897, 1101 |
| MspCI | CTTAAG | 2 cut(s) | 356, 1085 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 809 |
| NdeI | CATATG | 1 cut(s) | 705 |
| NdeII | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| NlaIII | CATG | 2 cut(s) | 620, 696 |
| NmuCI | GTSAC | 2 cut(s) | 602, 899 |
| NspI | RCATGY | 1 cut(s) | 696 |
| OliI | CACNNNNGTG | 3 cut(s) | 561, 758, 897 |
| PaeI | GCATGC | 1 cut(s) | 696 |
| PfeI | GAWTC | 2 cut(s) | 102, 842 |
| PleI | GAGTC | 3 cut(s) | 232, 273, 982 |
| PpsI | GAGTC | 3 cut(s) | 232, 273, 982 |
| Psp124BI | GAGCTC | 1 cut(s) | 377 |
| PsuI | RGATCY | 3 cut(s) | 90, 255, 915 |
| RsaI | GTAC | 2 cut(s) | 406, 595 |
| RsaNI | GTAC | 2 cut(s) | 405, 594 |
| RseI | CAYNNNNRTG | 4 cut(s) | 561, 758, 897, 1101 |
| SacI | GAGCTC | 1 cut(s) | 377 |
| SaqAI | TTAA | 5 cut(s) | 150, 357, 576, 1070, 1086 |
| Sau3AI | GATC | 4 cut(s) | 90, 255, 915, 1036 |
| ScaI | AGTACT | 1 cut(s) | 406 |
| SchI | GAGTC | 3 cut(s) | 233, 274, 982 |
| SduI | GDGCHC | 1 cut(s) | 377 |
| SetI | ASST | 7 cut(s) | 58, 141, 377, 611, 870, 891, 1029 |
| SfaNI | GCATC | 5 cut(s) | 37, 274, 759, 1060, 1105 |
| SmiI | ATTTAAAT | 1 cut(s) | 1071 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 561, 758, 897, 1101 |
| SmlI | CTYRAG | 2 cut(s) | 356, 1085 |
| SmoI | CTYRAG | 2 cut(s) | 356, 1085 |
| SphI | GCATGC | 1 cut(s) | 696 |
| Sse9I | AATT | 5 cut(s) | 17, 409, 598, 847, 1072 |
| SsiI | CCGC | 2 cut(s) | 146, 812 |
| SspMI | CTAG | 3 cut(s) | 183, 312, 402 |
| SstI | GAGCTC | 1 cut(s) | 377 |
| StyI | CCWWGG | 1 cut(s) | 1040 |
| SwaI | ATTTAAAT | 1 cut(s) | 1071 |
| TaaI | ACNGT | 1 cut(s) | 675 |
| TaqI | TCGA | 2 cut(s) | 921, 1054 |
| TasI | AATT | 5 cut(s) | 17, 409, 598, 847, 1072 |
| TatI | WGTACW | 2 cut(s) | 404, 593 |
| TfiI | GAWTC | 2 cut(s) | 102, 842 |
| Tru1I | TTAA | 5 cut(s) | 150, 357, 576, 1070, 1086 |
| Tru9I | TTAA | 5 cut(s) | 150, 357, 576, 1070, 1086 |
| TscAI | CASTG | 1 cut(s) | 680 |
| TseFI | GTSAC | 2 cut(s) | 602, 899 |
| Tsp45I | GTSAC | 2 cut(s) | 602, 899 |
| TspDTI | ATGAA | 5 cut(s) | 126, 224, 449, 519, 977 |
| TspRI | CASTG | 1 cut(s) | 680 |
| Vha464I | CTTAAG | 2 cut(s) | 356, 1085 |
| XapI | RAATTY | 2 cut(s) | 847, 1072 |
| XceI | RCATGY | 1 cut(s) | 696 |
| XspI | CTAG | 3 cut(s) | 183, 312, 402 |
| ZrmI | AGTACT | 1 cut(s) | 406 |