Rroxscaffold_5G00375310

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000106
Physical Location & Seq
Forward (+)
56136913 .. 56138238
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375310.1

Sequence Viewer

Length: 1029 bp
ATGACAATAGCCCTAAACGCCAAGAACAAGCTTGGCTTTGTCAATGGTGTCCTCAAACCTCCCTCAGCAGACAAGTATCCTAATGATTATGCGACTTGGTCTCGATGCAATGATATGATTCATTCTTGGATCATCAACTCCATTACTCCGGATATTTCTGACAGTGTCATCTACTACACCACTGCTCGTGAGGTTTGGGAGGATCTTCGTGAGCGCTTCTCTCAAAGTAATGCTCCTCGCATCTTCGAAATACAGCGAGAGATTGCTTATCACCGGCAGGAACAATTGTCTGTTTCGACCTATTACACCAAGCTGAAAAGTCTATGGGATGAGTTGGCTTCCTATACTGATGCGTCATCTTGTTCATGTGGAGCACAACAAGATCGACAAAAGTTGATGCAGTTTCTAATGGGTCTAAATGAATCTTACACTGCTACTCGAGGACAAATACTCTTAATGAATCCTCTCCCTTCAGTCCGCCAAGCCTATTCCTCTGTTTGTCAAGAAGAAAAACAAAGACTTCTTAGTGCCACCAATGCGATTACAGAGACCAACTCAAGTGCTGCCATGGCTGTACGAAGCAACAAGCCCAACAATTCAACTGCTTCAACCGAAATTGGAAGAACAGATCGTACCTACAACAATCCACAGGACATGCGACGTTTTGACCAGGACAAGCGTCGCTCAGGTTCTTTCAGAGGAAGGCCTCACTGCACCTATTGTGGAGAGATGGGTCATTTTATTGATAAATGTTATCAACTGAACGGATATCCTCCGGGTCACCCAAAAGCAAGATCGGGTTCTAACTCTAAATCGAACCGTTTCAAGAATGCCCATGCAGCCAATCAAGTTTCTGAGGGTTTCAGCAGAGATGAAGGAAAGTCGGTGGTGACAACTGAAATTTCTGAAGCTCAAATACAGCAGCTTTTGTCTCTTCTCAAGGACAAAGATGGAAATACAATTTCTCAAGCAAATGCAGCAGTAACCAAACCAGGATCCGGATACGAGGAAGATGATTGGTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

342

Amino Acids

38.5

Weight (kDa)

8.36

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 1 - 174 1.3e-12 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 148, 998
AciI CCGC 1 cut(s) 478
AclWI GGATC 4 cut(s) 137, 210, 990, 1003
AcsI RAATTY 1 cut(s) 900
AcuI CTGAAG 2 cut(s) 456, 927
AfaI GTAC 2 cut(s) 576, 634
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 998
AgsI TTSAA 3 cut(s) 600, 609, 826
AjnI CCWGG 2 cut(s) 669, 991
AluBI AGCT 4 cut(s) 31, 313, 911, 925
AluI AGCT 4 cut(s) 31, 313, 911, 925
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 3 cut(s) 105, 542, 936
AlwI GGATC 4 cut(s) 137, 210, 990, 1003
Ama87I CYCGRG 1 cut(s) 438
Aor13HI TCCGGA 2 cut(s) 148, 998
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 704
ApeKI GCWGC 4 cut(s) 563, 839, 922, 977
ApoI RAATTY 1 cut(s) 900
Asp700I GAANNNNTTC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 3 cut(s) 263, 773, 901
AsuII TTCGAA 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 438
BamHI GGATCC 1 cut(s) 995
BarI GAAGNNNNNNTAC 2 cut(s) 900, 932
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 376
BbvCI CCTCAGC 1 cut(s) 64
BbvI GCAGC 4 cut(s) 550, 851, 934, 989
BccI CCATC 2 cut(s) 724, 944
BciT130I CCWGG 2 cut(s) 671, 993
BciVI GTATCC 2 cut(s) 87, 995
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 3 cut(s) 105, 542, 936
BfoI RGCGCY 1 cut(s) 217
BfuI GTATCC 2 cut(s) 87, 995
BisI GCNGC 4 cut(s) 564, 840, 923, 978
BlsI GCNGC 4 cut(s) 565, 841, 924, 979
Bme1390I CCNGG 3 cut(s) 671, 777, 993
BmeT110I CYCGRG 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 997
BmrFI CCNGG 3 cut(s) 671, 777, 993
BmsI GCATC 4 cut(s) 95, 249, 340, 387
BoxI GACNNNNGTC 1 cut(s) 678
BplI GAGNNNNNCTC 4 cut(s) 203, 235, 539, 571
Bpu10I CCTNAGC 2 cut(s) 64, 685
Bpu14I TTCGAA 1 cut(s) 246
BpuEI CTTGAG 3 cut(s) 541, 923, 951
BpuMI CCSGG 1 cut(s) 777
BsaI GGTCTC 2 cut(s) 105, 542
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 2 cut(s) 148, 998
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse118I RCCGGY 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 115
BseAI TCCGGA 2 cut(s) 148, 998
BseBI CCWGG 2 cut(s) 671, 993
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 78, 699, 846
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 4 cut(s) 550, 851, 934, 989
BsgI GTGCAG 1 cut(s) 697
BshFI GGCC 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 4 cut(s) 149, 274, 776, 999
BslI CCNNNNNNNGG 1 cut(s) 998
BsmAI GTCTC 3 cut(s) 105, 542, 936
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 1 cut(s) 706
Bso31I GGTCTC 2 cut(s) 105, 542
BsoBI CYCGRG 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 376
Bsp13I TCCGGA 2 cut(s) 148, 998
Bsp143I GATC 6 cut(s) 129, 202, 382, 628, 794, 995
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 1 cut(s) 478
BspANI GGCC 1 cut(s) 706
BspCNI CTCAG 3 cut(s) 77, 698, 847
BspEI TCCGGA 2 cut(s) 148, 998
BspLI GGNNCC 1 cut(s) 997
BspPI GGATC 4 cut(s) 137, 210, 990, 1003
BspT104I TTCGAA 1 cut(s) 246
BspTNI GGTCTC 2 cut(s) 105, 542
BsrDI GCAATG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 6 cut(s) 129, 202, 382, 628, 794, 995
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 671, 993
Bst4CI ACNGT 2 cut(s) 164, 821
Bst6I CTCTTC 1 cut(s) 939
BstBI TTCGAA 1 cut(s) 246
BstDEI CTNAG 4 cut(s) 64, 524, 685, 855
BstDSI CCRYGG 1 cut(s) 567
BstEII GGTNACC 1 cut(s) 779
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 6 cut(s) 132, 205, 385, 631, 797, 998
BstMAI GTCTC 3 cut(s) 105, 542, 936
BstMBI GATC 6 cut(s) 129, 202, 382, 628, 794, 995
BstMWI GCNNNNNNNGC 5 cut(s) 17, 536, 569, 839, 977
BstNI CCWGG 2 cut(s) 671, 993
BstNSI RCATGY 1 cut(s) 658
BstPAI GACNNNNGTC 1 cut(s) 678
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 3 cut(s) 669, 775, 991
BstV1I GCAGC 4 cut(s) 550, 851, 934, 989
BstX2I RGATCY 2 cut(s) 202, 995
BstYI RGATCY 2 cut(s) 202, 995
BsuI GTATCC 2 cut(s) 87, 995
BsuRI GGCC 1 cut(s) 706
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 3 cut(s) 180, 429, 709
BtsIMutI CAGTG 4 cut(s) 169, 180, 429, 709
CfoI GCGC 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 273
CseI GACGC 2 cut(s) 342, 668
Csp6I GTAC 2 cut(s) 575, 633
CviAII CATG 4 cut(s) 366, 568, 655, 836
CviQI GTAC 2 cut(s) 575, 633
DdeI CTNAG 4 cut(s) 64, 524, 685, 855
DpnI GATC 6 cut(s) 131, 204, 384, 630, 796, 997
DpnII GATC 6 cut(s) 129, 202, 382, 628, 794, 995
Eam1104I CTCTTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 939
EciI GGCGGA 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 706
Eco31I GGTCTC 2 cut(s) 105, 542
Eco32I GATATC 1 cut(s) 770
Eco47III AGCGCT 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 456, 927
Eco88I CYCGRG 1 cut(s) 438
Eco91I GGTNACC 1 cut(s) 779
EcoO65I GGTNACC 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 669, 991
EcoRV GATATC 1 cut(s) 770
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 4 cut(s) 369, 571, 658, 839
FaiI YATR 8 cut(s) 90, 116, 325, 345, 367, 569, 656, 837
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 4 cut(s) 365, 567, 654, 835
Fnu4HI GCNGC 4 cut(s) 564, 840, 923, 978
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 564, 840, 923, 978
GlaI GCGC 1 cut(s) 215
GluI GCNGC 4 cut(s) 564, 840, 923, 978
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 1 cut(s) 706
HapII CCGG 4 cut(s) 149, 274, 776, 999
HgaI GACGC 2 cut(s) 342, 668
HhaI GCGC 1 cut(s) 216
Hin1II CATG 4 cut(s) 369, 571, 658, 839
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 118, 422, 460
HpaII CCGG 4 cut(s) 149, 274, 776, 999
HphI GGTGA 3 cut(s) 263, 773, 901
Hpy188I TCNGA 4 cut(s) 160, 698, 856, 907
Hpy188III TCNNGA 7 cut(s) 102, 149, 188, 209, 503, 826, 999
Hpy99I CGWCG 2 cut(s) 663, 684
HpyAV CCTTC 3 cut(s) 480, 696, 869
HpyCH4III ACNGT 2 cut(s) 164, 821
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 5 cut(s) 108, 400, 714, 839, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 536, 569, 839, 977
HpyF3I CTNAG 4 cut(s) 64, 524, 685, 855
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 4 cut(s) 369, 571, 658, 839
HspAI GCGC 1 cut(s) 214
Kpn2I TCCGGA 2 cut(s) 148, 998
Kzo9I GATC 6 cut(s) 129, 202, 382, 628, 794, 995
LmnI GCTCC 2 cut(s) 238, 371
Lsp1109I GCAGC 4 cut(s) 550, 851, 934, 989
LweI GCATC 4 cut(s) 95, 249, 340, 387
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 3 cut(s) 779, 889, 982
MalI GATC 6 cut(s) 131, 204, 384, 630, 796, 997
MboI GATC 6 cut(s) 129, 202, 382, 628, 794, 995
MboII GAAGA 6 cut(s) 197, 235, 518, 633, 926, 1022
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 2 cut(s) 202, 995
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 5 cut(s) 284, 595, 615, 900, 960
MroI TCCGGA 2 cut(s) 148, 998
MroXI GAANNNNTTC 1 cut(s) 821
MseI TTAA 1 cut(s) 455
MspI CCGG 4 cut(s) 149, 274, 776, 999
MspR9I CCNGG 3 cut(s) 671, 777, 993
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 2 cut(s) 671, 993
MwoI GCNNNNNNNGC 5 cut(s) 17, 536, 569, 839, 977
NciI CCSGG 1 cut(s) 777
NcoI CCATGG 1 cut(s) 567
NdeII GATC 6 cut(s) 129, 202, 382, 628, 794, 995
NlaIII CATG 4 cut(s) 369, 571, 658, 839
NlaIV GGNNCC 1 cut(s) 997
NmuCI GTSAC 2 cut(s) 779, 889
NspI RCATGY 1 cut(s) 658
NspV TTCGAA 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 438
PceI AGGCCT 1 cut(s) 706
PctI GAATGC 1 cut(s) 835
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 3 cut(s) 118, 422, 460
PflFI GACNNNGTC 2 cut(s) 97, 164
PkrI GCNGC 4 cut(s) 565, 841, 924, 979
PshAI GACNNNNGTC 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 669, 991
PspEI GGTNACC 1 cut(s) 779
PspGI CCWGG 2 cut(s) 669, 991
PspN4I GGNNCC 1 cut(s) 997
PspXI VCTCGAGB 1 cut(s) 438
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
PsuI RGATCY 2 cut(s) 202, 995
PsyI GACNNNGTC 2 cut(s) 97, 164
RsaI GTAC 2 cut(s) 576, 634
RsaNI GTAC 2 cut(s) 575, 633
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 4 cut(s) 564, 840, 923, 978
Sau3AI GATC 6 cut(s) 129, 202, 382, 628, 794, 995
ScrFI CCNGG 3 cut(s) 671, 777, 993
SduI GDGCHC 1 cut(s) 376
SfaNI GCATC 4 cut(s) 95, 249, 340, 387
Sfr274I CTCGAG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 438
SmlI CTYRAG 4 cut(s) 438, 556, 938, 966
SmoI CTYRAG 4 cut(s) 438, 556, 938, 966
Sse9I AATT 5 cut(s) 284, 595, 615, 900, 960
SseBI AGGCCT 1 cut(s) 706
SsiI CCGC 1 cut(s) 478
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 3 cut(s) 669, 775, 991
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 2 cut(s) 164, 821
TaiI ACGT 1 cut(s) 664
TaqI TCGA 6 cut(s) 103, 246, 296, 385, 439, 815
TasI AATT 5 cut(s) 284, 595, 615, 900, 960
TfiI GAWTC 3 cut(s) 118, 422, 460
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 4 cut(s) 169, 187, 436, 716
TseFI GTSAC 2 cut(s) 779, 889
TseI GCWGC 4 cut(s) 563, 839, 922, 977
Tsp45I GTSAC 2 cut(s) 779, 889
TspDTI ATGAA 5 cut(s) 110, 354, 435, 473, 888
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 4 cut(s) 169, 187, 436, 716
Tth111I GACNNNGTC 2 cut(s) 97, 164
XapI RAATTY 1 cut(s) 900
XceI RCATGY 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.