pycom03g01010

proton-transporting ATP synthase activity, rotational mechanism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000106
Physical Location & Seq
Reverse (-)
796857 .. 798048
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01010.2

Sequence Viewer

Length: 234 bp
ATGGTTGGAGTCCTTCCGTCAAGCCGTCCTACCTTGTCCTACCTACACAATAGCCGTCCTACAGCCCCCACTTTGCATGACTTGCAGCTTGCCATGCCTGACCTCTCTGCCGAGCAGCACTCCCGTGTTCTAGCTGCTCTACGTGACACCACCACCCCTCCTCAGGCCAATGCCATTCTCACTACTGATTTTGCCCAAGGACTTGGTTTCGAAGGCGATGATTGGTGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005754 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0019866 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044769 GO:0045259 GO:0045261 GO:0045267 GO:0046034 GO:0046390 GO:0046483 GO:0046689 GO:0046933 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko00904 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00195 map00904 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N FliG_C FliG_M FliG_N FliH Photo_RC

Protein Analysis

78

Amino Acids

8.27

Weight (kDa)

4.92

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 2 cut(s) 88, 134
AluI AGCT 2 cut(s) 88, 134
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 85, 115, 134
AsuII TTCGAA 1 cut(s) 210
AxyI CCTNAGG 1 cut(s) 162
BbvI GCAGC 3 cut(s) 97, 121, 127
BceAI ACGGC 2 cut(s) 9, 39
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 86, 116, 135
BlsI GCNGC 3 cut(s) 87, 117, 136
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bpu14I TTCGAA 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 3 cut(s) 97, 121, 127
BshFI GGCC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 163
BsnI GGCC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 210
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 82, 94
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 97, 121, 127
BstXI CCANNNNNNTGG 1 cut(s) 203
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 90
CviAII CATG 2 cut(s) 77, 94
CviJI RGCY 6 cut(s) 24, 54, 65, 88, 134, 167
CviKI_1 RGCY 6 cut(s) 24, 54, 65, 88, 134, 167
DdeI CTNAG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 196
Eco81I CCTNAGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 80, 97
FaiI YATR 2 cut(s) 78, 95
FatI CATG 2 cut(s) 76, 93
Fnu4HI GCNGC 3 cut(s) 86, 116, 135
Fsp4HI GCNGC 3 cut(s) 86, 116, 135
FspBI CTAG 1 cut(s) 131
GluI GCNGC 3 cut(s) 86, 116, 135
HaeIII GGCC 1 cut(s) 167
Hin1II CATG 2 cut(s) 80, 97
HinfI GANTC 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 23, 206
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 76, 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 94
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 80, 97
LpnPI CCDG 2 cut(s) 111, 149
Lsp1109I GCAGC 3 cut(s) 97, 121, 127
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 113, 168, 171
MslI CAYNNNNRTG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 82, 94
NlaIII CATG 2 cut(s) 80, 97
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 143
NspV TTCGAA 1 cut(s) 210
OliI CACNNNNGTG 1 cut(s) 123
PkrI GCNGC 3 cut(s) 87, 117, 136
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 3 cut(s) 86, 116, 135
SchI GAGTC 1 cut(s) 18
SetI ASST 6 cut(s) 35, 45, 90, 105, 136, 145
SfcI CTRYAG 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 123
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 210
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 85, 115, 134
Tsp45I GTSAC 1 cut(s) 143
TspGWI ACGGA 1 cut(s) 6
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.